View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1328_low_1 (Length: 715)

Name: NF1328_low_1
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1328_low_1
NF1328_low_1
[»] chr1 (8 HSPs)
chr1 (30-679)||(10011396-10012036)
chr1 (26-78)||(40981614-40981666)
chr1 (25-78)||(29836238-29836291)
chr1 (26-66)||(50860118-50860158)
chr1 (26-71)||(45118526-45118571)
chr1 (172-224)||(39076149-39076201)
chr1 (26-78)||(50290433-50290485)
chr1 (26-65)||(39076255-39076294)
[»] chr2 (6 HSPs)
chr2 (26-79)||(26449093-26449146)
chr2 (25-76)||(31409726-31409777)
chr2 (26-107)||(4768478-4768559)
chr2 (25-71)||(2985463-2985509)
chr2 (31-64)||(1556305-1556338)
chr2 (26-81)||(22145661-22145716)
[»] chr7 (5 HSPs)
chr7 (26-118)||(13761781-13761872)
chr7 (24-78)||(1971090-1971144)
chr7 (26-81)||(24759474-24759529)
chr7 (26-78)||(43903420-43903472)
chr7 (172-223)||(13761887-13761938)
[»] chr3 (8 HSPs)
chr3 (25-81)||(52126884-52126940)
chr3 (24-78)||(29129128-29129182)
chr3 (31-78)||(53689246-53689293)
chr3 (26-78)||(25612614-25612666)
chr3 (26-66)||(45458526-45458566)
chr3 (23-66)||(44712575-44712618)
chr3 (32-78)||(14459268-14459314)
chr3 (25-70)||(49826481-49826526)
[»] chr8 (6 HSPs)
chr8 (26-81)||(38681137-38681192)
chr8 (26-80)||(26955412-26955466)
chr8 (26-98)||(13863812-13863885)
chr8 (24-81)||(42313951-42314008)
chr8 (35-81)||(38682400-38682445)
chr8 (29-66)||(16358287-16358324)
[»] chr5 (6 HSPs)
chr5 (26-81)||(4077838-4077893)
chr5 (25-80)||(40946709-40946764)
chr5 (31-81)||(16352147-16352197)
chr5 (25-78)||(30463749-30463802)
chr5 (31-66)||(40162224-40162259)
chr5 (24-66)||(33553598-33553640)
[»] chr4 (18 HSPs)
chr4 (25-76)||(14210441-14210492)
chr4 (25-76)||(14211410-14211461)
chr4 (25-76)||(14212361-14212412)
chr4 (25-76)||(14213330-14213381)
chr4 (25-76)||(14214298-14214349)
chr4 (25-76)||(14215267-14215318)
chr4 (25-76)||(14218138-14218189)
chr4 (25-76)||(14219108-14219159)
chr4 (25-76)||(14220077-14220128)
chr4 (25-76)||(14221028-14221079)
chr4 (25-76)||(14221997-14222048)
chr4 (25-76)||(14222966-14223017)
chr4 (25-76)||(14209490-14209541)
chr4 (25-76)||(14216236-14216287)
chr4 (25-76)||(14217187-14217238)
chr4 (29-68)||(37619002-37619041)
chr4 (26-74)||(1678473-1678521)
chr4 (25-78)||(14586858-14586911)
[»] chr6 (5 HSPs)
chr6 (29-66)||(8840653-8840690)
chr6 (25-81)||(23073454-23073510)
chr6 (25-78)||(25357568-25357621)
chr6 (29-70)||(2319907-2319948)
chr6 (24-81)||(18645948-18646005)
[»] scaffold0005 (1 HSPs)
scaffold0005 (25-78)||(230463-230516)
[»] scaffold1095 (1 HSPs)
scaffold1095 (26-80)||(553-607)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 30 - 679
Target Start/End: Complemental strand, 10012036 - 10011396
Alignment:
Q  30 tttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatccaacaaaatggctccaaataatttaaatttcgaaatcagctcttccctc 129  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10012036 tttatatttaatcctagcaaacatgcttaccctaattccaaaaccctaatccaacaaaatggctccaaataatttaaatttcgaaatcagctcttccctc 10011937  T
Q  130 cttaattaattgaatgaagtgtcttggaatgacaaaactctaagccttcccactcagaatttatttcggtatattttccatgcacctaggtacactattt 229  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10011936 cttaattaattgaatgaagtatcttggaatgacaaaactctaagccttcccactcagaatttatttcggtatattttccatgcacctagatacactattt 10011837  T
Q  230 gcctgcactctatgcctatatatggatgttactaaccatgagtcagcaaacactcaatacattcaaaaaccgtttatattctccatggctcacatataaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||| |    
T  10011836 gcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacaatcaatacatccaaaaaccatttatattctccatggctcacatataga 10011737  T
Q  330 ccttcagacgtt--tttcttaccacaattaataatgtaccttggtgtactatatggaaaacatgcaactgatctatttcccacgtatgttcacacactaa 427  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  10011736 ccttcagacgttgctttcttaccacaattaataat-taccttggtgtactatatggaaaacatgcagctgatctatttcccacgcatgttcacacactaa 10011638  T
Q  428 accagcatctatcataacnnnnnnnattctagctcttcttcccatgctaactataggaatcacagtgctctcttcccttggttcaacaacacagcatcca 527  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  10011637 accagcatctatcataactttttttattctagctcttcttcccatgctaactttaggaatcacagtgctctcttcccttggttcaacagcacagtatcca 10011538  T
Q  528 tccaactcttcaacgccatctccatagctgcatgttctccgccagaatccttcatcaaccttcttcaacaacgaaatttacgacatgttttggatcgatt 627  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||          ||||||||||||||||||||||||||||||||||||    
T  10011537 tccaactcttcaatgccatctccatagctgcatgttctccgccagaatctttca----------tcaacaacgaaatttacgacatgttttggatcgatt 10011448  T
Q  628 caatgatcaccgaggatttctgattttttctgcaaaagatgaacacccctct 679  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10011447 caatgatcaccgaggatttcttattttttctgcaaaagatgaacacccctct 10011396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 40981666 - 40981614
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaa 40981614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 29836238 - 29836291
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  29836238 aatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaa 29836291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 50860118 - 50860158
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  50860118 atcctttatatctaatcctagcaaacgtgcttaccctaatt 50860158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 45118571 - 45118526
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaa 71  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||    
T  45118571 atcctttatatctaatggttgcaaacatgcttaccctaattccaaa 45118526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 39076201 - 39076149
Alignment:
Q  172 agccttcccactcagaatttatttcggtatattttccatgcacctaggtacac 224  Q
    ||||||| |||||||||||||| | ||| | ||||||||||||||||||||||    
T  39076201 agccttctcactcagaatttatgttggtttgttttccatgcacctaggtacac 39076149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 50290433 - 50290485
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||||||||||||||||| |||||||||||| ||||| | | |||||||||    
T  50290433 atcctttatatctaatcctaacaaacatgcttaacctaaattccaaaccctaa 50290485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 39076294 - 39076255
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaat 65  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  39076294 atcctttatatctaatcctagcaaacatgcaaaccctaat 39076255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 26449093 - 26449146
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaat 79  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26449093 atcctttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaat 26449146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 31409777 - 31409726
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  31409777 aatcctttatatataatcctagcaaacatgcttaccctaatttccaaaccct 31409726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 4768478 - 4768559
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc-aacaaaatggctccaaataatttaaa 107  Q
    ||||||||||||||||| ||||||||||||||| |||||||   ||||||||| || || |||||||||||||| ||||||||    
T  4768478 atcctttatatctaatcttagcaaacatgcttatcctaattgtcaaaccctaaacctaaaaaaatggctccaaa-aatttaaa 4768559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 2985463 - 2985509
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaa 71  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||    
T  2985463 aatcctttatatctaatggttgcaaacatgcttaccctaattccaaa 2985509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 1556305 - 1556338
Alignment:
Q  31 ttatatctaatcctagcaaacatgcttaccctaa 64  Q
    ||||||||||||||||||||||||||||||||||    
T  1556305 ttatatctaatcctagcaaacatgcttaccctaa 1556338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 22145716 - 22145661
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||||||||||||||||||||||   ||||||||||||||| |  |||||||||||    
T  22145716 atcctttatatctaatcctagcagtaatgcttaccctaatttcctaaccctaatcc 22145661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 13761781 - 13761872
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatccaacaaaatggctccaaataatttaaatttcgaaatca 118  Q
    ||||||||||||||||||||||||||||||  ||||||||| || || |||||||| | ||||||||| |||| ||||| ||||| |||||||    
T  13761781 atcctttatatctaatcctagcaaacatgcaaaccctaattgcataaacctaatcctaaaaaatggcttcaaa-aatttgaatttagaaatca 13761872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 1971090 - 1971144
Alignment:
Q  24 aaatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  1971090 aaatcatttatatctaatcctagcaaacatgcttaccctaatttccaaaccctaa 1971144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 24759474 - 24759529
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    ||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||    
T  24759474 atcctttatatctaatcctagcaaacatgtttaccctaatttcttaaccctaatcc 24759529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 43903420 - 43903472
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    ||||||||||||||||  |||||||||||| |||||||||| |||||||||||    
T  43903420 atcctttatatctaatgttagcaaacatgcctaccctaattgcaaaaccctaa 43903472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 13761887 - 13761938
Alignment:
Q  172 agccttcccactcagaatttatttcggtatattttccatgcacctaggtaca 223  Q
    |||||||||||||||||||||| | |||   |||||||||||||||||||||    
T  13761887 agccttcccactcagaatttatattggtcggttttccatgcacctaggtaca 13761938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 52126884 - 52126940
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||||||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  52126884 aatcctttatatctaatcctagcaaacatgcttaccctaatttcttaaccctaatcc 52126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 29129128 - 29129182
Alignment:
Q  24 aaatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  29129128 aaatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaa 29129182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 53689246 - 53689293
Alignment:
Q  31 ttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||| ||||||||||||||||||||||||||||| | |||||||||    
T  53689246 ttatatttaatcctagcaaacatgcttaccctaattgccaaaccctaa 53689293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 25612614 - 25612666
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    ||||||||||||||||  | |||||||||||||||||||||||  ||||||||    
T  25612614 atcctttatatctaatggttgcaaacatgcttaccctaattccctaaccctaa 25612666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 45458566 - 45458526
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  45458566 atcctttatatctgatcctagtaaacatgcttaccctaatt 45458526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 44712618 - 44712575
Alignment:
Q  23 caaatcctttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||    
T  44712618 caaatcctttatatataatcctagcaaacatgtttatcctaatt 44712575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 14459314 - 14459268
Alignment:
Q  32 tatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    ||||| ||||||||||||||||||||| ||||||| | |||||||||    
T  14459314 tatatataatcctagcaaacatgcttaacctaatttccaaaccctaa 14459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 49826526 - 49826481
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaa 70  Q
    ||||||||||||||||||||| |||||||| |||| ||| ||||||    
T  49826526 aatcctttatatctaatcctaacaaacatgtttactctagttccaa 49826481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 38681137 - 38681192
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||||||||||||||||||||||||||||||||||||| || | ||||||||||||    
T  38681137 atcctttatatctaatcctagcaaacatgcttaccctatttgctaaaccctaatcc 38681192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 26955412 - 26955466
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatc 80  Q
    |||||||||||||||| |||||||||||| ||||||||||| | |||||||||||    
T  26955412 atcctttatatctaattctagcaaacatgtttaccctaattgccaaaccctaatc 26955466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 13863885 - 13863812
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc-aacaaaatggctccaaa 98  Q
    ||||||||||||||||||||| |||||| |  |||||||||||| |||||||| || || ||| ||||||||||    
T  13863885 atcctttatatctaatcctaggaaacatacaaaccctaattccataaccctaaacctaaaaaattggctccaaa 13863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 42314008 - 42313951
Alignment:
Q  24 aaatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    ||||||||||||||||||||| ||||||||||  ||||||||| |  |||||||||||    
T  42314008 aaatcctttatatctaatcctggcaaacatgcaaaccctaattgcctaaccctaatcc 42313951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 38682400 - 38682445
Alignment:
Q  35 atctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||||||||||||||||||||||||||| ||| | ||||||||||||    
T  38682400 atctaatcctagcaaacatgcttaccct-attgctaaaccctaatcc 38682445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 16358287 - 16358324
Alignment:
Q  29 ctttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    |||||||||||||||||||||||||||  |||||||||    
T  16358287 ctttatatctaatcctagcaaacatgcaaaccctaatt 16358324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 4077838 - 4077893
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  4077838 atcctttatatctaatcctagcaaacatgcttatcctaattgccaaaccctaatcc 4077893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 40946709 - 40946764
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatc 80  Q
    |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||    
T  40946709 aatcctttatatctaatcctagcaaacatgtttaccctaattgccaaaccctaatc 40946764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 16352197 - 16352147
Alignment:
Q  31 ttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  16352197 ttatatctaatcctagcaaacatgcttaccctaattgccaaaccctaatcc 16352147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 30463749 - 30463802
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || |||||    
T  30463749 aatcctttatatctaatcctagcaaacatgcaaaccctaattccacaatcctaa 30463802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 40162224 - 40162259
Alignment:
Q  31 ttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    ||||||||||||||| ||||||||||||||||||||    
T  40162224 ttatatctaatcctaacaaacatgcttaccctaatt 40162259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 33553598 - 33553640
Alignment:
Q  24 aaatcctttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  33553598 aaatcttttatatctaatcctagcaaatatgcttatcctaatt 33553640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14210492 - 14210441
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14210492 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14210441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14211461 - 14211410
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14211461 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14212412 - 14212361
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14212412 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14212361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14213381 - 14213330
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14213381 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14213330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14214349 - 14214298
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14214349 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14214298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14215318 - 14215267
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14215318 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14215267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14218189 - 14218138
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14218189 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14218138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14219159 - 14219108
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14219159 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14219108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14220128 - 14220077
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14220128 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14220077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14221079 - 14221028
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14221079 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14221028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14222048 - 14221997
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14222048 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14221997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14223017 - 14222966
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  14223017 aatcctttatatctaatcctagcaaacatgcttaccctaatttccaaaccct 14222966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14209541 - 14209490
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  14209541 aatcctttatatctaatcgtagcaaacatgcttaccctaatttccaaaccct 14209490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14216287 - 14216236
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  14216287 aatcctttatatataatcctagcaaacatgcttaccctaatttccaaaccct 14216236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 14217238 - 14217187
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccct 76  Q
    |||||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  14217238 aatcctttatatctaatcgtagcaaacatgcttaccctaatttccaaaccct 14217187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 37619041 - 37619002
Alignment:
Q  29 ctttatatctaatcctagcaaacatgcttaccctaattcc 68  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37619041 ctttatatctaatcctagcaaacatgcttaccctaattcc 37619002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 1678521 - 1678473
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaacc 74  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  1678521 atcctttatatctaatcctagcaaacatgcaaaccctaattccacaacc 1678473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 14586911 - 14586858
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||||||||||||||||||||||||||||  | ||||||| || ||||||||    
T  14586911 aatcctttatatctaatcctagcaaacatgcaaatcctaattgcataaccctaa 14586858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 8840653 - 8840690
Alignment:
Q  29 ctttatatctaatcctagcaaacatgcttaccctaatt 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8840653 ctttatatctaatcctagcaaacatgcttaccctaatt 8840690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 23073510 - 23073454
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||| ||||||||||||||| |||||||||||||||||||||   ||||||||||||    
T  23073510 aatcttttatatctaatccttgcaaacatgcttaccctaattgtcaaaccctaatcc 23073454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 25357621 - 25357568
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||||||||||||||  | ||||||||||||||||||||| | |||||||||    
T  25357621 aatcctttatatctaatggttgcaaacatgcttaccctaattaccaaaccctaa 25357568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 2319907 - 2319948
Alignment:
Q  29 ctttatatctaatcctagcaaacatgcttaccctaattccaa 70  Q
    ||||||||||||||||| |||| ||| |||||||||||||||    
T  2319907 ctttatatctaatcctaacaaatatgtttaccctaattccaa 2319948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 18645948 - 18646005
Alignment:
Q  24 aaatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatcc 81  Q
    |||||||||||||||||||||||||   ||| ||||||||||| |  |||||||||||    
T  18645948 aaatcctttatatctaatcctagcagtaatgtttaccctaatttcttaaccctaatcc 18646005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 230463 - 230516
Alignment:
Q  25 aatcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaa 78  Q
    |||||||||||||||||||||||||||||||  | ||||||| || ||||||||    
T  230463 aatcctttatatctaatcctagcaaacatgcaaatcctaattgcataaccctaa 230516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 607 - 553
Alignment:
Q  26 atcctttatatctaatcctagcaaacatgcttaccctaattccaaaaccctaatc 80  Q
    ||||||||||| ||||||||||||||||||  |||||||||  | ||||||||||    
T  607 atcctttatatttaatcctagcaaacatgcaaaccctaattgtataaccctaatc 553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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