View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1328_low_10 (Length: 341)
Name: NF1328_low_10
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 45039733 - 45039431
Alignment:
| Q |
10 |
aagaatattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaacattatattggccacaatcccttcttgtatccca |
109 |
Q |
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|||| ||||| |||||||||||||| || |||||||| || |||| |||||||||||||| ||||||||||| |||||||||||||||| || ||| |
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| T |
45039733 |
aagagtatttccaaatggcaagacattgatacttgttatggacagatgaagaagttgaagctgggacattatattgaccacaatcccttcttgcattcca |
45039634 |
T |
|
| Q |
110 |
caataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttcaccga |
209 |
Q |
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||||||||||||||| | ||||||||| | |||| |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
45039633 |
caataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctcccgtaacattcttcagtgttcatttcaccga |
45039534 |
T |
|
| Q |
210 |
ttgtagtgtctttgtcaattaggacatgagatcttgttatgctgctcaatgatcctgcatctctcttcttgatgtcttcttcaagctctttcaaacgctc |
309 |
Q |
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||| | ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| || |
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| T |
45039533 |
ttgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatgtcttcttctagctctttcaaacgttc |
45039434 |
T |
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| Q |
310 |
ttc |
312 |
Q |
| |
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||| |
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| T |
45039433 |
ttc |
45039431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 112 - 312
Target Start/End: Complemental strand, 45065543 - 45065343
Alignment:
| Q |
112 |
ataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttcaccgatt |
211 |
Q |
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| T |
45065543 |
ataaatcttaattgacacttccttcccaagaactctagcatcaacctttagaagtgatttatttcggccataacattcttcagtgttcatttcacctatc |
45065444 |
T |
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| Q |
212 |
gtagtgtctttgtcaattaggacatgagatcttgttatgctgctcaatgatcctgcatctctcttcttgatgtcttcttcaagctctttcaaacgctctt |
311 |
Q |
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|||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
45065443 |
gtagtgtctttgtcaattagtacatgggatcttgttatgttgctcattgatcctgcatctttcttcttaatgttttcttcaagctctttcaaacgctctt |
45065344 |
T |
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| Q |
312 |
c |
312 |
Q |
| |
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| |
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| T |
45065343 |
c |
45065343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 45082857 - 45083158
Alignment:
| Q |
10 |
aagaatattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaacattatattggccacaatcccttcttgtatccca |
109 |
Q |
| |
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|||| ||||| |||||||||||||| ||| | |||||| ||||||| |||| |||||||||||| ||||||||| ||| |||| | | || ||||| |
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| T |
45082857 |
aagagtatttccaaatggcaagacattggtagttgttatggagagatgaagaatttgaagctgcaaaattatattgaccagaatctccttttacttccca |
45082956 |
T |
|
| Q |
110 |
caataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttcaccga |
209 |
Q |
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| T |
45082957 |
cagcgaatcttgattaacacttccttccctagaaccctcacttcaagctctggaaatgtttcattgtgccgataacattctttagtgttcatttcaccca |
45083056 |
T |
|
| Q |
210 |
ttgtagtgtctttgtcaattaggacatgagatcttgttatgctgctcaatgatcctgcatctctcttcttgatgtcttcttcaagctctttcaaacgctc |
309 |
Q |
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||| |||||| |||||| |||| |||||||||||||||| || |||||||||| ||| || ||||||||||||||||||| |||||||||| ||| || |
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| T |
45083057 |
ttgcagtgtcattgtcatcaaggagatgagatcttgttatggtgatcaatgatcccgcacctttcttcttgatgtcttcttctagctctttcacacgttc |
45083156 |
T |
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| Q |
310 |
tt |
311 |
Q |
| |
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|| |
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|
| T |
45083157 |
tt |
45083158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 29377486 - 29377207
Alignment:
| Q |
10 |
aagaatattttcaaatggcaagacactggaacttgttacagagagatatagaagttgaagctgcaacattatattggccacaatcccttcttgtatccca |
109 |
Q |
| |
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|||| ||||| |||||||||||||| ||| | ||||||| ||||||| ||||| |||||||| ||||||||||| |||||||||| ||||| || ||| |
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| T |
29377486 |
aagagtatttccaaatggcaagacattggtagttgttacggagagatgaagaagctgaagctgggacattatattgaccacaatcccctcttgcatgcca |
29377387 |
T |
|
| Q |
110 |
caataaatcttgattgacacttccttcccaagaaccctagcatcaacctctagaagtgattcatttcggccataacattcttcagtgttcatttcaccga |
209 |
Q |
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|||| |||||||||| ||||||| ||||| ||||||||||| |||||||||| ||||||||||||||| || |||||||||||||| ||||||||| | | |
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| T |
29377386 |
caatgaatcttgattaacacttcattccctagaaccctagcttcaacctctacaagtgattcatttcgcccgtaacattcttcagttttcatttcatcta |
29377287 |
T |
|
| Q |
210 |
ttgtagtgtctttgtcaattaggacatgagatcttgttatgctgctcaatgatcctgcatctctcttcttgatgtcttct |
289 |
Q |
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||| ||||||||||||||||| || ||| |||||||||||| |||||| ||| |||| ||| |||| ||||| |||||| |
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| T |
29377286 |
ttgcagtgtctttgtcaattaagatatgggatcttgttatggtgctcactgaccctgtgtctttctttttgatatcttct |
29377207 |
T |
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