View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1328_low_15 (Length: 295)

Name: NF1328_low_15
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1328_low_15
NF1328_low_15
[»] chr1 (2 HSPs)
chr1 (11-266)||(7580822-7581077)
chr1 (15-266)||(7100173-7100424)
[»] chr4 (2 HSPs)
chr4 (16-267)||(13617348-13617601)
chr4 (84-245)||(52352780-52352941)
[»] chr5 (17 HSPs)
chr5 (11-254)||(17983646-17983889)
chr5 (15-266)||(30207274-30207525)
chr5 (84-257)||(30476196-30476369)
chr5 (84-266)||(30436634-30436816)
chr5 (15-266)||(17417696-17417947)
chr5 (84-239)||(30400895-30401050)
chr5 (15-266)||(30520728-30520979)
chr5 (15-266)||(30561068-30561319)
chr5 (84-241)||(29872995-29873152)
chr5 (84-266)||(30061193-30061375)
chr5 (84-245)||(29854132-29854293)
chr5 (84-266)||(30750467-30750649)
chr5 (180-266)||(30337628-30337714)
chr5 (180-266)||(30484318-30484404)
chr5 (84-257)||(30241493-30241666)
chr5 (180-266)||(30712531-30712617)
chr5 (84-132)||(30676525-30676573)
[»] chr3 (1 HSPs)
chr3 (73-247)||(25293069-25293243)
[»] chr7 (1 HSPs)
chr7 (84-266)||(26708153-26708335)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 7581077 - 7580822
Alignment:
Q  11 cacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttcct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  7581077 cacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacatcgtccaaaaccagcaaacgtctttttcct 7580978  T
Q  111 tgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttga 210  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7580977 tgcaacatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttga 7580878  T
Q  211 ctgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7580877 ccgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 7580822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 7100173 - 7100424
Alignment:
Q  15 gatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgca 114  Q
    |||||||| |||||||||||||| |||| |||||| ||||||||||||| | ||||  |||| ||||  |||||||||| |||||||||| | |||||||    
T  7100173 gatttcaacttattccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgca 7100272  T
Q  115 tcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactga 214  Q
    ||||||||||||| ||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7100273 tcatttcttgcacttttctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaatccccttgactga 7100372  T
Q  215 gaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  7100373 gaaaacctctgaaacacaaacccaaatttttgttttgaaattgtcactcacc 7100424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 13617348 - 13617601
Alignment:
Q  16 atttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttc--cttgc 113  Q
    |||||||  |||||||||||| |||||||| ||  |||||||| |||||||||||  ||||||| | ||||||||| |||||| ||||||| |  |||||    
T  13617348 atttcaacgtattccatttcttatggtctattctgaattcaaactcttgacttttgttccaaacgtcgtccaaaacaagcaaaaatcttttacaccttgc 13617447  T
Q  114 atcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactg 213  Q
    | ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||  |||||| | || || ||    
T  13617448 agcatttcttgcacctttctttgtattacatctaaatatgttgcatcacacttctgttttgtcatggattctataatggaaagcaaaattctctagattg 13617547  T
Q  214 agaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacct 267  Q
    |||| |||||| ||| ||| ||||||||||||||||||||||||| || |||||    
T  13617548 agaaaacctctaaaatacatacccaaatttttgttttgaaattgtcacccacct 13617601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 52352780 - 52352941
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    |||||||||| |||| ||||||| ||||||| || ||||||| |  |||||||||| ||||||||| | |   |||||||||| | | |||| || ||||    
T  52352780 tccaaaaccaacaaatatcttttaccttgcaacaattcttgcgctcttctttgtatcacatctaaatctaagccatcacacttttctcttgtaatagatt 52352879  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaattttt 245  Q
    |||||||||||||||||||||  ||||| |||||  |||| |||||||||||||||||||||    
T  52352880 ctataatggaacacaaaatcctattgacagagaaatcctcagaaacacaaacccaaattttt 52352941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 17983646 - 17983889
Alignment:
Q  11 cacagatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttcct 110  Q
    |||||| |||||  ||||||| ||||  |||| || ||| ||||||||||||| ||||||  |||| |||| ||| ||||||| ||| |||||||| | |    
T  17983646 cacagacttcaacctattccacttcttttggtttaatccgaattcaaattcttcacttttgttccacacatcgtcgaaaaccaacaagcatcttttacgt 17983745  T
Q  111 tgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttga 210  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||| ||||| | || |||| ||||||||||||||||| |||||||||||| |||||||    
T  17983746 tgcaacatttcttgcacctttctttgtattacctctaaacctatttcatcaaatttttgttctgtcatggattctataacggaacacaaaattcccttga 17983845  T
Q  211 ctgagaatacctctgaaacacaaacccaaatttttgttttgaaa 254  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||    
T  17983846 ctgagaaaacctttgaaacccaaacccaaatttttgttttgaaa 17983889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 30207274 - 30207525
Alignment:
Q  15 gatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgca 114  Q
    ||||||| | ||||||||||||| |||  || ||| ||||| ||||  ||| ||||  |||| ||||  ||||||| ||||||| || |||| |||||||    
T  30207274 gatttcagtatattccatttctcttggcttaatccgaattccaattgctgatttttgttccacacatcatccaaaatcagcaaatatattttaccttgca 30207373  T
Q  115 tcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactga 214  Q
     || ||| |||||||||||||||||||||||||||   |   | ||| |||||| | |||| || |||||||||||||| |||||||||| |||||| ||    
T  30207374 gcaattcctgcacctttctttgtattacatctaaattgaagccgtcatacttctctcttgtgatagattctataatggagcacaaaatcctcttgaccga 30207473  T
Q  215 gaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||   ||| |||||||||||||| |||||||| || ||||||  |||||||    
T  30207474 gaaagtctcggaaacacaaacccatatttttgtattaaaattgctactcacc 30207525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 30476196 - 30476369
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    ||||||||||||||| ||||||| |||||||  | |||| |  | ||||||||||||||||||||| |||  |||||| |||| | |||||| || ||||    
T  30476196 tccaaaaccagcaaaaatcttttaccttgcaatagttctcgtgcttttctttgtattacatctaaatccaaggcatcaaacttgtcttttgtgatagatt 30476295  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattg 257  Q
    |||||||||||||||||||||  ||||| |||||   ||| |||||||||| ||||| |||||| || ||||||    
T  30476296 ctataatggaacacaaaatccttttgacagagaaagtctccgaaacacaaatccaaacttttgtattaaaattg 30476369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 30436634 - 30436816
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    ||||||| ||||||| || |||| ||||||| || | |||||||||||||||  |||||||||||| | |   || ||||||||| | |||| || ||||    
T  30436634 tccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaaatcaaagtcagcacacttctctcttgtgatagatt 30436733  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    ||||||| |||||||||||||  ||||| |||||   ||| ||||||||||||||||||||| | |  |||||| ||||||||    
T  30436734 ctataatagaacacaaaatccttttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcacc 30436816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 17417947 - 17417696
Alignment:
Q  15 gatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgca 114  Q
    ||||||||  ||||||||||||| |||  || ||| ||| | |||| |||  ||||  |||| |||| |||||||||||| ||| ||||||| |||| ||    
T  17417947 gatttcaacgtattccatttctcttggcttaatccgaatgctaattgttgcattttgttccacacatcgtccaaaaccagaaaatatcttttacctttca 17417848  T
Q  115 tcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactga 214  Q
      | ||||| |||||||||| ||| |||||||||| |||  |||||||||||      | | || |||||||| |||||||||||||||| ||||| |||    
T  17417847 atagttctttcacctttcttagtaatacatctaaatccaaggcatcacactttccacctattatagattctatgatggaacacaaaatcctcttgattga 17417748  T
Q  215 gaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||  | || |||||||||| |||||||||||| || ||||||  |||||||    
T  17417747 gaaagcatcagaaacacaaatccaaatttttgtattaaaattgctactcacc 17417696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 239
Target Start/End: Original strand, 30400895 - 30401050
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    ||||||| ||||||| || || | ||||||| || |||||||||||||||||||||||||||| || |||  ||||||||  ||| |  ||| ||  |||    
T  30400895 tccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttctttgtattacatctgaatccaaggcatcacatatctctcctgtaatatatt 30400994  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaa 239  Q
    ||||||| ||||||||||||| |||||| |||||   ||| |||||||||||||||    
T  30400995 ctataatagaacacaaaatcctcttgacagagaaagtctcggaaacacaaacccaa 30401050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 30520979 - 30520728
Alignment:
Q  15 gatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgca 114  Q
    |||||||| |||||||||||||| |||  || ||||||||| | ||||||| || |  |||| ||||  |||||||| |||||| ||||||| |||| ||    
T  30520979 gatttcaacttattccatttctcttggcttaatccaaattccagttcttgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttcca 30520880  T
Q  115 tcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactga 214  Q
     || ||||||||| | || |||||| ||||||||| | |  ||||||||||| | | |||  |  ||||||||||| | |||||||||    || || ||    
T  30520879 acaattcttgcacttgtcgttgtataacatctaaatctaaggcatcacacttttctcttgaaaaagattctataatagtacacaaaattttgttaacaga 30520780  T
Q  215 gaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||  |||| ||||||||||||||||||||||| |  ||||||| |||||||    
T  30520779 gaaagcctcagaaacacaaacccaaatttttgtatcaaaattgtcactcacc 30520728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 30561319 - 30561068
Alignment:
Q  15 gatttcaatttattccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgca 114  Q
    |||||||| |||||||||||||| |||  || ||||||||| | ||||||| || |  |||| ||||  |||||||| |||||| ||||||| |||| ||    
T  30561319 gatttcaacttattccatttctcttggcttaatccaaattccagttcttgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttcca 30561220  T
Q  115 tcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactga 214  Q
     || ||||||||| | || |||||| ||||||||| | |  ||||||||||| | | |||  |  ||||||||||| | |||||||||    || || ||    
T  30561219 acaattcttgcacttgtcgttgtataacatctaaatctaaggcatcacacttttctcttgaaaaagattctataatagtacacaaaattttgttaacaga 30561120  T
Q  215 gaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||  |||| ||||||||||||||||||||||| |  ||||||| |||||||    
T  30561119 gaaagcctcagaaacacaaacccaaatttttgtatcaaaattgtcactcacc 30561068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 241
Target Start/End: Original strand, 29872995 - 29873152
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    |||||||| |||||| || |||| ||||||| || |||||||||||||||||  |||||||||||  | |   || ||||||||| | |||| || ||||    
T  29872995 tccaaaacgagcaaatattttttaccttgcagcacttcttgcacctttctttccattacatctaattcgaagtcagcacacttctctcttgtgatagatt 29873094  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaat 241  Q
    |||||||||||||  |||||| |||||| |||||   ||| |||||||||||||||||    
T  29873095 ctataatggaacaacaaatcctcttgacagagaaagtctcagaaacacaaacccaaat 29873152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 30061193 - 30061375
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    ||||||||||||||| ||||||| ||||||| || | ||||||||| |||||  |||||| |  || | |   ||  ||||||||||  ||| || ||||    
T  30061193 tccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctctctttccattacagcataatcaaagtcaggacacttctgtaatgtgatagatt 30061292  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    ||||||| ||||||||||||| ||| || |||||   ||| ||||||||||||||||||||| |||  ||||||  |||||||    
T  30061293 ctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcacc 30061375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 245
Target Start/End: Original strand, 29854132 - 29854293
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    ||||||||||||||| || |||| ||||||| || |||||||||| ||||||  | |||||||||| | |   || || |||||| | |||| || ||||    
T  29854132 tccaaaaccagcaaatatattttaccttgcaacaattcttgcacccttctttccaatacatctaaatcaaagtcagcagacttctctcttgtgatagatt 29854231  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaattttt 245  Q
    ||| ||| ||||||||||| | ||||||||||||    || ||||| |||||||||||||||    
T  29854232 ctacaatagaacacaaaattctcttgactgagaaagtttcagaaacgcaaacccaaattttt 29854293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 30750467 - 30750649
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattg-catcacacttctgttttgtcatggat 182  Q
    |||||||||| |||| ||||||| ||||||| || | |||||||||||||||  |||||| | | || ||  | ||  |||||||| |  ||| || |||    
T  30750467 tccaaaaccaacaaatatcttttcccttgcaacaatccttgcacctttctttccattacagc-atactcaaagtcaggacacttctctaatgtgatagat 30750565  T
Q  183 tctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||||||| ||||||||||||| ||| || |||||   ||| ||||||||||||||||||||| |||  ||||||| |||||||    
T  30750566 tctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgtcactcacc 30750649  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 30337714 - 30337628
Alignment:
Q  180 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    ||||||||||| ||||||||||||| ||| || |||||   ||| ||||||||||||||||||||| |||  ||||||  |||||||    
T  30337714 gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcacc 30337628  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 30484318 - 30484404
Alignment:
Q  180 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||||||||||  |||||||||||| |||||| |||||   ||| ||||||||||||||||||||| | |  |||||| ||||||||    
T  30484318 gattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcacc 30484404  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 30241666 - 30241493
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    |||||||| |||||| || |||| ||||| | || ||| ||||||||| | ||| |||||| |||| | |   ||||| |||||| || ||| ||  |||    
T  30241666 tccaaaactagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttcttttctgtgataaatt 30241567  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattg 257  Q
     ||||||||||||||||||||  ||||| |||||   ||| |||||||||||||||| ||| || || ||||||    
T  30241566 gtataatggaacacaaaatcctgttgacagagaaattctcagaaacacaaacccaaactttagtattaaaattg 30241493  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 30712617 - 30712531
Alignment:
Q  180 gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    |||||||||||  |||||||||||| |||||| |||||   ||| |||||||||||||||| |||| | |  |||||| ||||||||    
T  30712617 gattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaaattttttatcaaaattgcgactcacc 30712531  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 30676573 - 30676525
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttc 132  Q
    ||||||||||||||| ||||||| ||||||| || | ||||||||||||    
T  30676573 tccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttc 30676525  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 25293243 - 25293069
Alignment:
Q  73 tccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttt 172  Q
    |||| |||| ||||||||  |||||| || |||| |||||||  | ||||| ||||||||||||||||||||||||| | |  ||||||||||||| | |    
T  25293243 tccacacatcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttctttgtattacatctaaatcaaaggcatcacacttctctct 25293144  T
Q  173 tgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgt 247  Q
     || || ||||||||||||||||||||||||| |||||| |||||   ||| |||||||||||||||||||||||    
T  25293143 agtgatagattctataatggaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttgt 25293069  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 84 - 266
Target Start/End: Original strand, 26708153 - 26708335
Alignment:
Q  84 tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt 183  Q
    ||||||| ||||||| || |||| ||||||| || | |||||||||||||||  |||||||||||  | |   ||  |||||||| |  ||| || ||||    
T  26708153 tccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaactcaaagtcaggacacttctctaatgtgatagatt 26708252  T
Q  184 ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcacc 266  Q
    ||||||| ||||||||||||| ||||||||||||   ||| ||||||||||||||||||||| | |  ||||||| |||||||    
T  26708253 ctataatagaacacaaaatcctcttgactgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgtcactcacc 26708335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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