View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1328_low_17 (Length: 270)
Name: NF1328_low_17
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 27637792 - 27637564
Alignment:
| Q |
12 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgtt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27637792 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgtt |
27637693 |
T |
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| Q |
112 |
ttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtcca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27637692 |
ttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtcca |
27637593 |
T |
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| Q |
212 |
atttgtggaatggcaaagaagggtattat |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27637592 |
atttgtggaatggcaaagaagggtattat |
27637564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 37353985 - 37353757
Alignment:
| Q |
12 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgtt |
111 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||||| ||| |||| |
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| T |
37353985 |
agagagtaacgatgttggtggaaaatgatgcggaatcaagttgtggagaaaaggaagaagtaagagctcaaaagcatgtaagacgtgaaaagaatttgtt |
37353886 |
T |
|
| Q |
112 |
ttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtcca |
211 |
Q |
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||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37353885 |
ttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtcca |
37353786 |
T |
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| Q |
212 |
atttgtggaatggcaaagaagggtattat |
240 |
Q |
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| T |
37353785 |
atctgtggaatggcaaagaagggtattat |
37353757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 37365959 - 37365731
Alignment:
| Q |
12 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtgtt |
111 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||||| ||| |||| |
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| T |
37365959 |
agagagtaacgatgttggtggaaaatgatgcggaatcaagttgtggagaaaaggaagaagtaagagctcaaaagcatgtaagacgtgaaaagaatttgtt |
37365860 |
T |
|
| Q |
112 |
ttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtcca |
211 |
Q |
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||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37365859 |
ttgttcaaagtataagacacacactcttggtgtcttagttcttccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtcca |
37365760 |
T |
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| Q |
212 |
atttgtggaatggcaaagaagggtattat |
240 |
Q |
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| T |
37365759 |
atctgtggaatggcaaagaagggtattat |
37365731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 12292496 - 12292661
Alignment:
| Q |
79 |
tgaaaagcgtgtaagacgtgaaaacaatg---tgttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttca |
175 |
Q |
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|||||||||||| ||||||| ||||||| |||||||| |||||||||| |||||| | | |||||||||| | |||||||||||||| |||||| |
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| T |
12292496 |
tgaaaagcgtgtcagacgtggaaacaatactatgttttgtccaaagtgtaacacaaactcctcagatgtcttatttataccatgtaggcatctttcttca |
12292595 |
T |
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| Q |
176 |
tgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggcaaagaagggtattatt |
241 |
Q |
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| T |
12292596 |
tgcaaagcatgtgaagctttactcgaagcctgtccaatgtgtggaatgaaaaagaagggtgttatt |
12292661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 12242707 - 12242921
Alignment:
| Q |
30 |
tggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgt---gttttgttcaaagtgtaa |
126 |
Q |
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|||||||||| || | ||| |||| |||||||| || || || ||| |||||| ||||| ||||||| ||||||| | ||||||| |||| ||||| |
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| T |
12242707 |
tggaaaatgatgcaaactcatgttgcggtgaaaatgatgatgtaagaattgaaaaacgtgttagacgtggaaacaatattatgttttgtccaaaatgtaa |
12242806 |
T |
|
| Q |
127 |
gacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgtccaatttgtggaatggca |
226 |
Q |
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|||| | || | ||||||||||||||||||||| ||||| |||||||||||||| ||| | |||| |||| || |||||||||| |||||||||| | |
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| T |
12242807 |
cacaagctcttcggatgtcttatttctgccatgtagacatctttcttcatgcaaagcgtgtgaagcttcactcaaagcttgtccaatctgtggaatggaa |
12242906 |
T |
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| Q |
227 |
aagaagggtattatt |
241 |
Q |
| |
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||||| ||| ||||| |
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| T |
12242907 |
aagaatggtgttatt |
12242921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 34698036 - 34697812
Alignment:
| Q |
12 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtg-- |
109 |
Q |
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|||||| ||||||| | ||| |||||||||||||||| |||| ||||||| ||||||| |||||||||||||| | ||| | || ||||| || |
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| T |
34698036 |
agagagcaaggatggttgtgctaaatgacgcggaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgacaatttgaa |
34697937 |
T |
|
| Q |
110 |
-ttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
208 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |
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| T |
34697936 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactccaaacttgt |
34697837 |
T |
|
| Q |
209 |
ccaatttgtggaatggcaaagaagg |
233 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
34697836 |
ccaatatgtggaatggcaaagaagg |
34697812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 34720448 - 34720224
Alignment:
| Q |
12 |
agagagtaaggatgttggtggaaaatgacgcggaatcaagttgtggtgaaaaggaagaagtcagagctgaaaagcgtgtaagacgtgaaaacaatgtg-- |
109 |
Q |
| |
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|||||| ||||||| | ||| |||||||||||||||| |||| ||||||| ||||||| |||||||||||||| | ||| | || ||||| || |
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| T |
34720448 |
agagagcaaggatggttgtgctaaatgacgcggaatcatgttgcggtgaaagtgaagaagcaagagctgaaaagcgcatgagaagcgacgacaatttgaa |
34720349 |
T |
|
| Q |
110 |
-ttttgttcaaagtgtaagacaaacactcttggtgtcttatttctgccatgtaggcatctctcttcatgcaaagcatgtaatgctttactccaaacttgt |
208 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||||||| |||| | |||||||||||||||||| |
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| T |
34720348 |
gttttgttcaaagtgtaagacaaactttgttggtgtcttatttcttccatgtaggcatctatctttatgcaaacaatgtgaagctttactccaaacttgt |
34720249 |
T |
|
| Q |
209 |
ccaatttgtggaatggcaaagaagg |
233 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
34720248 |
ccaatatgtggaatggcaaagaagg |
34720224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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