View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1328_low_24 (Length: 251)
Name: NF1328_low_24
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 33062500 - 33062277
Alignment:
| Q |
15 |
tctgactccgattctctttctcttgcattattatctagataaatatattcttataacattattcatattatacacnnnnnnnnnnnnnnntacactagat |
114 |
Q |
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| T |
33062500 |
tctgactccaattttcttcctcttgcatcattatctatataaacatatttttagaacattattcatattatacacaaaaagatata----tacactagat |
33062405 |
T |
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| Q |
115 |
acaaatttaaatcaaattgacatgtggatgttgtaatccatggtttgatgctgatatattttatattcttgcttagttgtttgctgttcctgcatgttgg |
214 |
Q |
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| T |
33062404 |
acaaatttaactcaacttgacatgtggatgttgtcatccatggtttgatggtgaaatattgtatattcttgcttagttgtttgttgttcctacatgttgg |
33062305 |
T |
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| Q |
215 |
atttggagttctactatactagtattatc |
243 |
Q |
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| T |
33062304 |
atttggacttctac-atactagtattatc |
33062277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 33081752 - 33081689
Alignment:
| Q |
172 |
attttatattcttgcttagttgtttgctgttcctgcatgttggatttggagttctactatacta |
235 |
Q |
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| T |
33081752 |
attttatattcttgcttagttgtttgttgttcctacatgttggatttggacttctactatacta |
33081689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33081833 - 33081783
Alignment:
| Q |
1 |
atttactctgactttctgactccgattctctttctcttgcattattatcta |
51 |
Q |
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| T |
33081833 |
atttactctgactttctgactccgattctcttcctcttgcattattatcta |
33081783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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