View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1328_low_3 (Length: 517)
Name: NF1328_low_3
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_3 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 10160037 - 10160385
Alignment:
| Q |
11 |
caaagggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagcagtcagtttaagattagaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| | |
|
|
| T |
10160037 |
caaagggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagtagtcggtttgagattagga |
10160136 |
T |
|
| Q |
111 |
aggggtgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccataga |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160137 |
aggg-tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccataga |
10160235 |
T |
|
| Q |
211 |
ctcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160236 |
ctcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttg |
10160335 |
T |
|
| Q |
311 |
agtcggataagagtttccaactttgcttaccaagcatagagaggttaaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10160336 |
agtcggataagagtttccaactttgcttaccaagcatagagaggttaaaa |
10160385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 116 - 350
Target Start/End: Complemental strand, 16862135 - 16861901
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||||||||||||||| |||||| ||| || | ||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||||||| |||||||| |
|
|
| T |
16862135 |
tgcgaatccaaggcattggccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggttactccaaagactcct |
16862036 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|||||| || ||||||||||| || || || ||||| ||||||| ||| ||| | ||||| |||||||||| | | ||||| || ||||||| |
|
|
| T |
16862035 |
ccatgtgtagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagtaaggaatttgagtct |
16861936 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |
|
|
| T |
16861935 |
gtcatgagtttccaactttgcttaccaagcataga |
16861901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 287
Target Start/End: Original strand, 21731064 - 21731185
Alignment:
| Q |
166 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttc |
265 |
Q |
| |
|
||||||||||| ||||||||||| | |||||| |||||||| |||||||||||| | || ||||||||||| || || |||||||| || |||| | |
|
|
| T |
21731064 |
ttccatctatggcccaaggtaagaagagattgagtactccaaagactcctccatatgtagcttggattatgaccaagaggtgcatccaagaagtcccgac |
21731163 |
T |
|
| Q |
266 |
gcgggtagtatttagctttgag |
287 |
Q |
| |
|
| ||| |||||||||||||||| |
|
|
| T |
21731164 |
gagggaagtatttagctttgag |
21731185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 9181813 - 9182161
Alignment:
| Q |
11 |
caaagggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagcagtcagtttaagattagaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| | |
|
|
| T |
9181813 |
caaagggatgttccaagaattccaacacgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcgaagtagtcggtttgagattagga |
9181912 |
T |
|
| Q |
111 |
aggggtgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccataga |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9181913 |
aggg-tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccataga |
9182011 |
T |
|
| Q |
211 |
ctcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9182012 |
ctcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttg |
9182111 |
T |
|
| Q |
311 |
agtcggataagagtttccaactttgcttaccaagcatagagaggttaaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9182112 |
agtcggataagagtttccaactttgcttaccaagcatagagaggttaaaa |
9182161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 11626460 - 11626112
Alignment:
| Q |
11 |
caaagggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcggagcagtcagtttaagattagaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| | |
|
|
| T |
11626460 |
caaagggatgttccaagaattccaactcgggttcaacaaataattaactgtaatatcctcatggtgcaccaacggcgtagtagtcggtttgagattagga |
11626361 |
T |
|
| Q |
111 |
aggggtgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccataga |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626360 |
aggg-tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccataga |
11626262 |
T |
|
| Q |
211 |
ctcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626261 |
ctcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttg |
11626162 |
T |
|
| Q |
311 |
agtcggataagagtttccaactttgcttaccaagcatagagaggttaaaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11626161 |
agtcggataagagtttccaactttgcttaccaagcatagagaggttaaaa |
11626112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 120 - 356
Target Start/End: Complemental strand, 50181727 - 50181491
Alignment:
| Q |
120 |
aatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccat |
219 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||| | || |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50181727 |
aatccaaggcatattccacacattattttgagaaccgtttccaatcttccatctatggcctaaggtaagtaaagattgcgtactccatagactcctccat |
50181628 |
T |
|
| Q |
220 |
gtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggata |
319 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| | || ||||| ||||||||||| |
|
|
| T |
50181627 |
gtataacttggattgtggccgagattggcatccaaaaaatcccttcggggaaagtatttagctttgaggatccttgagaatagagaggatgagtcggata |
50181528 |
T |
|
| Q |
320 |
agagtttccaactttgcttaccaagcatagagaggtt |
356 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |
|
|
| T |
50181527 |
gaagtttccaactttgcttaccgagcatagaaaggtt |
50181491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 151 - 350
Target Start/End: Complemental strand, 44138590 - 44138391
Alignment:
| Q |
151 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
250 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||||||| ||||| ||||||||| || ||||| || || ||||||||||||||||| ||||| |
|
|
| T |
44138590 |
gaaccataaccaatcttccatctatgtcccaaggtaagtaaatgttgtgcactccataggcttctccaggtgtagcttggattatggccgagaggggcat |
44138491 |
T |
|
| Q |
251 |
ccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||| || | || |||| ||| | || || || | |||||||||||||||||||||||||||||| |
|
|
| T |
44138490 |
ccaagaaatcccttcgcgggaaatatttagctttgagaattcgtgtaagtagagaagacgaatctgaaaggagtttccaactttgcttaccaagcataga |
44138391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 163 - 353
Target Start/End: Original strand, 51493001 - 51493191
Alignment:
| Q |
163 |
atcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatccc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| || |||||||||||||| || ||||||||| |||||| |
|
|
| T |
51493001 |
atcttccatctatgacccaaggtaagtaaagattgagtgctccaaagacccctccatgcgtagcttggattatggccaagaggggcatccaagaaatcca |
51493100 |
T |
|
| Q |
263 |
ttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcatagagag |
353 |
Q |
| |
|
||| ||| |||||||||||||||||| | | ||||| || ||||||||| | ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
51493101 |
ttctagggaagtatttagctttgaggacacgagtaagtaaggaatttgagtcggtgaggagtttccaactttgcttaccgagcattgagag |
51493191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 20128527 - 20128409
Alignment:
| Q |
118 |
cgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcc |
217 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | |||||||| |||||||||||||| ||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
20128527 |
cgaatccaaggcatactccacatattaatttttgtgccatcaccaatcttccatctatgtcccaaggtaagaagagattgggtactccatagactcctcc |
20128428 |
T |
|
| Q |
218 |
atgtataacttggattatg |
236 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
20128427 |
aagtgtagcttggattatg |
20128409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 116 - 350
Target Start/End: Original strand, 12459969 - 12460203
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| || |||| ||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| |
|
|
| T |
12459969 |
tgcgaatccaaggcattgaccacacatttatttttgagccattaccaatcttccatctatagcccaacgtaagtaatgattgggtactccaaagactcct |
12460068 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
||||||||| ||||||||||| || || || ||||| ||||||| ||| ||| | ||||| |||||||||| | | ||||| || ||||||| |
|
|
| T |
12460069 |
ccatgtatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagtaaggaatttgagtct |
12460168 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||| |
|
|
| T |
12460169 |
gtcatgagtttccaactttgcttaccgagcataga |
12460203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 121 - 347
Target Start/End: Original strand, 27644548 - 27644774
Alignment:
| Q |
121 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
220 |
Q |
| |
|
|||||||||||| ||||| ||| |||| ||||||| || |||||||| || || || |||||||| || || |||||||| ||||||||||| | |
|
|
| T |
27644548 |
atccaaggcatagtccacacatttattttggaaccatttccaatcttccacctgtgtcctaaggtaagcaagtgctgggtactccaaagactcctccaag |
27644647 |
T |
|
| Q |
221 |
tataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataa |
320 |
Q |
| |
|
|||| ||||||||||| || || ||||||||| |||||||| |||||| | ||||| ||||||||||| | | ||||| ||||| ||||||| || |
|
|
| T |
27644648 |
tatagcttggattatgaccaagagaggcatccaagaaatccctacgcgggaaatatttggctttgaggatacgagtaagtaaggaggtagagtcggtcaa |
27644747 |
T |
|
| Q |
321 |
gagtttccaactttgcttaccaagcat |
347 |
Q |
| |
|
||||||||||||||| ||||||||||| |
|
|
| T |
27644748 |
gagtttccaactttgtttaccaagcat |
27644774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 14647513 - 14647395
Alignment:
| Q |
118 |
cgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcc |
217 |
Q |
| |
|
|||||||| |||||| ||| | ||| |||| |||||||| || || ||||||||||||||||||||||| | |||||| |||||||| |||||||||| |
|
|
| T |
14647513 |
cgaatccatggcatagaccatacatttatttttgaaccatctccaattttccatctatgacccaaggtaagcagagattgagtactccaaagactcctcc |
14647414 |
T |
|
| Q |
218 |
atgtataacttggattatg |
236 |
Q |
| |
|
|| | || ||||||||||| |
|
|
| T |
14647413 |
atatgtagcttggattatg |
14647395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 350
Target Start/End: Original strand, 13189541 - 13189746
Alignment:
| Q |
145 |
atttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggt |
244 |
Q |
| |
|
|||| ||| ||||| || || |||||||||| |||||||||||||||| ||| |||||||| ||||| ||||| || || |||||||||||||| | |
|
|
| T |
13189541 |
attttagagccatctccaattttccatctataacccaaggtaagtaaatgttgagtactccaaagacttctccaagtgtagcttggattatggccaatag |
13189640 |
T |
|
| Q |
245 |
tggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaag |
344 |
Q |
| |
|
|||||||| || |||||||| ||| | |||||||||||| | | | | |||| | | ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
13189641 |
gtgcatccaagaagtcccttcgtggggaatatttagctttgggaacacgggtaagtagcgtagaagagtcggttaagagtttccaacttttcttaccaag |
13189740 |
T |
|
| Q |
345 |
cataga |
350 |
Q |
| |
|
|||||| |
|
|
| T |
13189741 |
cataga |
13189746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 27465707 - 27465618
Alignment:
| Q |
135 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtata |
224 |
Q |
| |
|
||||| |||||| | |||||||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
27465707 |
ccacacattaatataagaaccatcaccaattttccattcatgacccaaaataagtaaagattgagtactccatagactcttccaagtata |
27465618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 50181834 - 50181776
Alignment:
| Q |
12 |
aaagggatgttccaagaattccaacccgggttcaacaaataattaactgtaatatcctc |
70 |
Q |
| |
|
||||||||||||||||| |||| | |||| |||||||||||||| || |||| |||||| |
|
|
| T |
50181834 |
aaagggatgttccaagagttcccatccggattcaacaaataattgaccgtaagatcctc |
50181776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 116 - 359
Target Start/End: Complemental strand, 23150163 - 23149920
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||||||||| || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23150163 |
tgcggatccaaggcatactccacacattaatttgagaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
23150064 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||||||||||||||||| || | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
23150063 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
23149964 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
23149963 |
gataagagtttccaactttgcttaccgagcatagaaagattaaa |
23149920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 151 - 341
Target Start/End: Original strand, 42577985 - 42578175
Alignment:
| Q |
151 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
250 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
42577985 |
gaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcat |
42578084 |
T |
|
| Q |
251 |
ccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttacc |
341 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||| ||||| | | ||||| ||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
42578085 |
ccaagaaatcccttctagggaagtatttagcttcgaggacacgagtaagtaaggagtttgagtcggtgaggagtttccaactttgcttacc |
42578175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 121 - 359
Target Start/End: Original strand, 13022112 - 13022350
Alignment:
| Q |
121 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
220 |
Q |
| |
|
|||||||||||| ||| | |||||||| | ||| ||||| || |||||||||| |||||| ||||| ||| ||| |||||||| ||| ||||||| | |
|
|
| T |
13022112 |
atccaaggcatattccaaacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagaaaatgttgagtactccaaagattcctccaag |
13022211 |
T |
|
| Q |
221 |
tataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataa |
320 |
Q |
| |
|
|| | ||||||||||| |||||| ||||||||| ||||||||||| ||| ||||||| ||||||||| | | ||||| ||||| ||||||| || |
|
|
| T |
13022212 |
taaagcttggattatgaccgagggaggcatccaagaaatcccttcgtgggaagtatttgtctttgaggacacgagtaagtaaggaggtagagtcggtcaa |
13022311 |
T |
|
| Q |
321 |
gagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13022312 |
gagtttccaactttgcttaccaagcatagagagattaaa |
13022350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 121 - 359
Target Start/End: Original strand, 13093636 - 13093874
Alignment:
| Q |
121 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
220 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||| ||||| || |||||||||| |||||| ||||| ||| ||| |||||||| ||| ||||||| | |
|
|
| T |
13093636 |
atccaaggcatattccacacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagcaaatgttgagtactccaaagattcctccaag |
13093735 |
T |
|
| Q |
221 |
tataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataa |
320 |
Q |
| |
|
|| | ||||||||||| |||||| ||||||||| ||||||||||| || ||||||| ||||||||| | | ||||| ||||| ||||||| || |
|
|
| T |
13093736 |
taaagcttggattatgaccgagggaggcatccaagaaatcccttcgtggaaagtatttgtctttgaggacacgagtaagtaaggaggtagagtcggtcaa |
13093835 |
T |
|
| Q |
321 |
gagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13093836 |
gagtttccaactttgcttaccaagcatagagagattaaa |
13093874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 7273889 - 7273748
Alignment:
| Q |
142 |
ttaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccga |
241 |
Q |
| |
|
||||||| |||||||| | |||||||||| ||||||||||||||||||| |||||||||||| || || |||||||| || |||||||||||||||| |
|
|
| T |
7273889 |
ttaattttggaaccatctctaatcttccatccatgacccaaggtaagtaaatgttgtgtactccaaaggcttctccatgtgtagcttggattatggccga |
7273790 |
T |
|
| Q |
242 |
ggttggcatccaaaaaatcccttcgcgggtagtatttagctt |
283 |
Q |
| |
|
| ||||||||| ||||||||||| ||| | ||||| |||| |
|
|
| T |
7273789 |
gagaggcatccaagaaatcccttcgtgggaaatatttggctt |
7273748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 33496311 - 33496394
Alignment:
| Q |
154 |
ccatcacctatcttccatctatgacccaaggtaagtaaagatt-gtgtactccatagactcctccatgtataacttggattatg |
236 |
Q |
| |
|
||||| || |||||||||||||||||||| || || ||| ||| | ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
33496311 |
ccatctccaatcttccatctatgacccaaagtgagcaaatatttgagtactccatggactcctccatgtgtagcttggattatg |
33496394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 116 - 359
Target Start/End: Original strand, 12351923 - 12352166
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||| || || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12351923 |
tgcggatccaaggcatactccacacattaatttgagagccgtctccaattttccagctatggcccaaggtaagtaaagattgagtactccatagactcct |
12352022 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||||||||||||||||| || | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
12352023 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
12352122 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
12352123 |
gataagagtttccaactttgcttaccgagcatagaaagattaaa |
12352166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 116 - 359
Target Start/End: Complemental strand, 41146648 - 41146405
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| | ||||| || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41146648 |
tgcggatccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
41146549 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||||||||||||||||| || | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
41146548 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
41146449 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
41146448 |
gataagagtttccaactttgcttaccgagcatagaaagattaaa |
41146405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 119 - 360
Target Start/End: Complemental strand, 29843502 - 29843261
Alignment:
| Q |
119 |
gaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcca |
218 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||| |||||||||||||||| || ||||||||||| | | |||| |
|
|
| T |
29843502 |
gaatccaaggcatactccacacattaatttgagaatcatcactaatcgtccatctatggcccaaggtaagtaaaggttttgtactccatatattgctcct |
29843403 |
T |
|
| Q |
219 |
tgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggat |
318 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||| || | |||||||||| | |||||||||| ||||||||||||| |||||| |
|
|
| T |
29843402 |
tgtataacttggattatgacctaggttggcatccaaaaaatcccttctcgaaaaatatttagcttccaagatccttgatggtaaagaggttgactcggat |
29843303 |
T |
|
| Q |
319 |
aagagtttccaactttgcttaccaagcatagagaggttaaaa |
360 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| | ||||||| |
|
|
| T |
29843302 |
aagagtttttaactttgcttaccaaaaatagaaaagttaaaa |
29843261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 116 - 350
Target Start/End: Complemental strand, 46598693 - 46598459
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||| ||||||| ||||| |||||| | ||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
46598693 |
tgcggatccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcct |
46598594 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
||| ||||| ||||||||||| |||||| | |||||||| || |||| || ||| ||||||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
46598593 |
ccaggtatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaagtatttagctttgaggattctggtgaataaagaggaggagtcg |
46598494 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||| |
|
|
| T |
46598493 |
gataagagtttccaaccttgcttgccgagcataga |
46598459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 116 - 350
Target Start/End: Complemental strand, 31801376 - 31801142
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||| ||||||| ||||| |||||| | ||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
31801376 |
tgcggatccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcct |
31801277 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
||| ||||| ||||||||||| |||||| | |||||||| || ||| || ||| ||||||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
31801276 |
ccaagtatagcttggattatgaccgagggtagcatccaagaagtccagtctagggaagtatttagctttgaggattctggtgaataaagaggaggagtcg |
31801177 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||| |
|
|
| T |
31801176 |
gataagagtttccaaccttgcttgccgagcataga |
31801142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 116 - 331
Target Start/End: Complemental strand, 512746 - 512531
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||| || |||| ||||| |||||| | ||||||||| | ||||||||||||| ||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
512746 |
tgcggatccacggaatactccacacattaatcttagaaccatctacattcttccatctatggcccaaagtaagtaaagattgagtactccataagctcct |
512647 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|| ||||| ||||||||||| |||||| | |||||||| || |||| || ||| ||||||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
512646 |
tcaggtatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaagtatttagctttgaggattctggtgaataaagaggaggagtcg |
512547 |
T |
|
| Q |
316 |
gataagagtttccaac |
331 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
512546 |
gataagagtttccaac |
512531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 18222722 - 18222902
Alignment:
| Q |
163 |
atcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatccc |
262 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
18222722 |
atcttccatctatgccccaaggtaagtaatgattgaatactccaaagactcctccaagtatagcttggattatggccgagagaggcatccaagaaatccc |
18222821 |
T |
|
| Q |
263 |
ttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaa |
343 |
Q |
| |
|
|||||||| | ||||| |||| ||||| | | ||||| |||| || |||| |||||||| |||||||||||||||| |
|
|
| T |
18222822 |
ttcgcgggaaatatttgactttcaggatacgagtaagtaagcaggtagattcggtcaagagttttcaactttgcttaccaa |
18222902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 157 - 359
Target Start/End: Complemental strand, 43968901 - 43968699
Alignment:
| Q |
157 |
tcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaa |
256 |
Q |
| |
|
||||| || |||||| ||| |||||| ||||| ||| ||| |||||||| |||||||| || ||| | ||||||||||| |||||| ||||||||| | |
|
|
| T |
43968901 |
tcaccaattttccatatataacccaaagtaagcaaatgttgagtactccaaagactccttcaagtaaagcttggattatgaccgagggaggcatccaaga |
43968802 |
T |
|
| Q |
257 |
aatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcatagagaggtt |
356 |
Q |
| |
|
|||||||||| ||| ||||||| |||| ||||| | | ||||| ||||| ||||||| ||||||||| |||||||||||||||||||||| || || |
|
|
| T |
43968801 |
aatcccttcgtgggaagtatttggcttcgaggacacgagtaagtaaggaggtagagtcggtcaagagtttcaaactttgcttaccaagcatagatagatt |
43968702 |
T |
|
| Q |
357 |
aaa |
359 |
Q |
| |
|
||| |
|
|
| T |
43968701 |
aaa |
43968699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 29843585 - 29843541
Alignment:
| Q |
35 |
acccgggttcaacaaataattaactgtaatatcctcatggtgcac |
79 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29843585 |
acccggattcaacaaataattaacggtaacatcctcatggtgcac |
29843541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 116 - 359
Target Start/End: Complemental strand, 32498440 - 32498197
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| | ||||| || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32498440 |
tgcggatccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
32498341 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|||||| |||||||||||||| || || ||||||||||||||||||||||| || | ||||||||||||||||| ||||| | || |||| |||||| |
|
|
| T |
32498340 |
ccatgtgtaacttggattatgacctagattggcatccaaaaaatcccttcggggaaaatatttagctttgaggattcttgaaaatagggaggacgagtcg |
32498241 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
32498240 |
gataagagtttccaactttgcttaccgagcatagaaagattaaa |
32498197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 23601337 - 23601500
Alignment:
| Q |
186 |
aagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttg |
285 |
Q |
| |
|
|||||||||||| || ||| | | ||||| ||| ||||| ||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
23601337 |
aagtaaagattgagtgctcaacaaactcc-ccaggtataggttggattatggccaaggttgacatccaagaaatcccttcgcgggaagtatttagctttg |
23601435 |
T |
|
| Q |
286 |
aggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
||||||| | |||| |||||| ||||| || ||| ||||||| ||| ||| |||| |||||| |
|
|
| T |
23601436 |
aggatccaggtgagtagagaggtggagtcaaattagattttccaaattttctttccaatcataga |
23601500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 54422601 - 54422713
Alignment:
| Q |
121 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
220 |
Q |
| |
|
||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||||||||| | |||||| | ||||||||||||||| || | |
|
|
| T |
54422601 |
atccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggcactccatagactccttcaag |
54422700 |
T |
|
| Q |
221 |
tataacttggatt |
233 |
Q |
| |
|
| || |||||||| |
|
|
| T |
54422701 |
tgtagcttggatt |
54422713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 33707597 - 33707464
Alignment:
| Q |
127 |
ggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataac |
226 |
Q |
| |
|
||||||| | ||| ||| |||| ||| |||||||| |||||||||| ||| || | | |||||||| || ||||| || ||||||||||| ||||||| |
|
|
| T |
33707597 |
ggcatactcaacacattgatttcagagccatcaccaatcttccatccatgccctatgataagtaaattttaggtacttcagagactcctccacgtataac |
33707498 |
T |
|
| Q |
227 |
ttggattatggccgaggttggcatccaaaaaatc |
260 |
Q |
| |
|
||||||| ||||| || |||||| |||| ||||| |
|
|
| T |
33707497 |
ttggattgtggccaagattggcacccaagaaatc |
33707464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 43732791 - 43732690
Alignment:
| Q |
135 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggatta |
234 |
Q |
| |
|
||||| |||||||| | ||||| ||| |||||||||||||||||||| |||| ||| ||| | |||||| ||||| ||||| || || ||||||||| |
|
|
| T |
43732791 |
ccacacattaattttggtaccattaccaatcttccatctatgacccaaagtaactaagtgttgggcactccaaagacttctccaagtgtagcttggatta |
43732692 |
T |
|
| Q |
235 |
tg |
236 |
Q |
| |
|
|| |
|
|
| T |
43732691 |
tg |
43732690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 116 - 359
Target Start/End: Original strand, 2500401 - 2500643
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||| || || || || ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2500401 |
tgcggatccaaggcatactccacacattaatttgagagccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcct |
2500500 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| |||||||||||||| || | |||||||||||| |||| ||||| | || |||| |||||| |
|
|
| T |
2500501 |
ccatgtgtaacttggattatggcctagattggcatctaaaaaatcccttcggggaaaatatttagctttg-ggattcttgaaaatagggaggacgagtcg |
2500599 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcatagagaggttaaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
2500600 |
gataagagtttccaactttgcttaccgagcatagaaagattaaa |
2500643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 151 - 353
Target Start/End: Original strand, 52966076 - 52966278
Alignment:
| Q |
151 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
250 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
52966076 |
gaaccatctccaatcttccatctatgacccaaggtaagtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcat |
52966175 |
T |
|
| Q |
251 |
ccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||| ||| | | | ||||| || ||||||||| | ||||||||||||||||||| ||||||| || |
|
|
| T |
52966176 |
ccaagaaatcccttctagggaagtatttagcttagagaacacgagtaagtaaggaatttgagtcggtgaggagtttccaactttgcttaacaagcattga |
52966275 |
T |
|
| Q |
351 |
gag |
353 |
Q |
| |
|
||| |
|
|
| T |
52966276 |
gag |
52966278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 262
Target Start/End: Original strand, 4755664 - 4755781
Alignment:
| Q |
145 |
atttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggt |
244 |
Q |
| |
|
|||| |||| ||||||| |||||||||||||| || | | |||||||| ||| |||||||| ||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
4755664 |
attttagaaacatcaccaatcttccatctatggcctatgataagtaaattttgggtactccaaagactcctccatgtatagcttggattatagccaaggt |
4755763 |
T |
|
| Q |
245 |
tggcatccaaaaaatccc |
262 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4755764 |
tggcatccaaaaaatccc |
4755781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 121 - 356
Target Start/End: Complemental strand, 6864603 - 6864369
Alignment:
| Q |
121 |
atccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatg |
220 |
Q |
| |
|
||||| ||||||| ||||| ||| |||| |||||||||||| ||||||| |||| | || | |||||||||| ||| ||||||| || ||||| | |
|
|
| T |
6864603 |
atccatggcatactccacacattgattt-agaaccatcaccgatcttccttctaaggcctatggtaagtaaattttggatactccaatgatggctccacg |
6864505 |
T |
|
| Q |
221 |
tataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataa |
320 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||| ||| ||| | |||||| ||||||||| || | |||||||||| ||||| ||| | |
|
|
| T |
6864504 |
tatagcttggattgtggccaaggttggcatccaaaaaatcccgtcgggggaaatatttaactttgaggactctagcatgtaaagaggtggagtc-gatga |
6864406 |
T |
|
| Q |
321 |
g-agtttccaactttgcttaccaagcatagagaggtt |
356 |
Q |
| |
|
| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
6864405 |
gaagtttccagcgttgcttaccaagcatagagaggtt |
6864369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 51141361 - 51141446
Alignment:
| Q |
151 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
236 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| | | |||| |||||||| ||| | |||||||| |||||||||||||| |
|
|
| T |
51141361 |
gaaccatctccaatcttccatctatgacccaaggtaagcagatattgagtactccaaagaattctccatgtgtaacttggattatg |
51141446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 2332530 - 2332392
Alignment:
| Q |
118 |
cgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctcc |
217 |
Q |
| |
|
|||| ||||||||| ||||| |||||||| ||| |||||||| || |||||||||| | ||||||||||||| || |||||||| |||||||||| |
|
|
| T |
2332530 |
cgaagccaaggcattttccacacattaattttagagccatcaccaattttccatctataatacaaggtaagtaaatgtta-gtactccaaagactcctcc |
2332432 |
T |
|
| Q |
218 |
atgtataacttggattatggccgaggttggcatccaaaaa |
257 |
Q |
| |
|
| ||||| ||||||||||| ||||| | | |||||||||| |
|
|
| T |
2332431 |
aagtatagcttggattatgaccgagatggacatccaaaaa |
2332392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 24596087 - 24596185
Alignment:
| Q |
135 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggatt |
233 |
Q |
| |
|
||||| |||||||| ||||||| | | |||||||||| | | |||| |||||||||||||| | |||||| |||||||||||||| || |||||||| |
|
|
| T |
24596087 |
ccacacattaattttcgaaccattaacaatcttccatcgaaggtccaaagtaagtaaagattgggcactccaaagactcctccatgtgtagcttggatt |
24596185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 39695667 - 39695704
Alignment:
| Q |
319 |
aagagtttccaactttgcttaccaagcatagagaggtt |
356 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
39695667 |
aagagtttccaactttgcttaccaaacatagataggtt |
39695704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 141 - 350
Target Start/End: Original strand, 189589 - 189794
Alignment:
| Q |
141 |
attaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccg |
240 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||| ||||||||||||| || |
|
|
| T |
189589 |
attaatttgggaaccatcaccaatcatccatctatgtcccaaggtgagtaaagattgagtactcaaaagactcctccatgtaaaacttggattatgtcct |
189688 |
T |
|
| Q |
241 |
aggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttac |
340 |
Q |
| |
|
|| ||||||| | ||||||||| | ||||| | |||||| |||||||||| |||||| || ||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
189689 |
agattggcatacgaaaaatcccattgcgggaaatatttaaatttgaggatctttgataatagagaggttga----gataagagcttccacctttgcttac |
189784 |
T |
|
| Q |
341 |
caagcataga |
350 |
Q |
| |
|
|||||||||| |
|
|
| T |
189785 |
caagcataga |
189794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 350
Target Start/End: Original strand, 861 - 1095
Alignment:
| Q |
116 |
tgcgaatccaaggcatacgccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcct |
215 |
Q |
| |
|
|||||||||||||||| ||||| ||| || | ||||||| ||| ||||||||||||| ||||| |||||||| ||||| ||||||| |||||||| |
|
|
| T |
861 |
tgcgaatccaaggcattgaccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgattggatactccaaagactcct |
960 |
T |
|
| Q |
216 |
ccatgtataacttggattatggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcg |
315 |
Q |
| |
|
||||||||| ||||||||||| || || || ||||| ||||||| ||| ||| | ||||| |||||||||| | | ||||| || ||||||| |
|
|
| T |
961 |
ccatgtatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaatatttggctttgaggacacgagtaagtaaggaatttgagtct |
1060 |
T |
|
| Q |
316 |
gataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
| | ||||||||||||||||||||| |||||||| |
|
|
| T |
1061 |
gtcatgagtttccaactttgcttaccgagcataga |
1095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 4243224 - 4243154
Alignment:
| Q |
166 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
236 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4243224 |
ttccatctatgacccaaagtgagcaaagattgagtactccatagactcctccatgtatagcttggattatg |
4243154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 166 - 353
Target Start/End: Complemental strand, 647375 - 647188
Alignment:
| Q |
166 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcatccaaaaaatcccttc |
265 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||||||||| || || ||||| || ||||| || ||| ||||| ||||| | || |
|
|
| T |
647375 |
ttccatctatatcccaatgtaagtaaagattgagtactccatagactcctccaagtgtagcttgggttgtggcccagaggggcctccaagaaatctcgtc |
647276 |
T |
|
| Q |
266 |
gcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcatagagag |
353 |
Q |
| |
|
||| ||||||| |||||||||| | | |||| || | ||||||| || ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
647275 |
tagggaagtatttggctttgaggacgcgagtaagtatggaattagagtcggttaggagtttccagctttgcttaccaagcattgagag |
647188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 42703933 - 42704085
Alignment:
| Q |
135 |
ccacaaattaatttgagaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggatta |
234 |
Q |
| |
|
||||| |||||||| | ||||||||| |||||| || |||||||||| ||||| || ||| |||||||| ||||| ||||| ||| | ||||||||| |
|
|
| T |
42703933 |
ccacacattaattttggcaccatcaccaatcttcaatatatgacccaatgtaagcaagtgttgggtactccaaagacttctccaagtaaagcttggatta |
42704032 |
T |
|
| Q |
235 |
tggccgaggttggcatccaaaaaatcccttcgcgggtagtatttagctttgag |
287 |
Q |
| |
|
||||| | | | ||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
42704033 |
tggccaatagggacctccaagaaatcccttcgcgggtaatatttggctttgag |
42704085 |
T |
|
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Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 356
Target Start/End: Original strand, 237912 - 238117
Alignment:
| Q |
151 |
gaaccatcacctatcttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatggccgaggttggcat |
250 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||| || | |||||| | |||||||| |||||||| || | |||||||| ||||| | ||||||| |
|
|
| T |
237912 |
gaaccgtcaccaatcttccatctatagcccaaggttagaagagattgagaactccatatgctcctccaagtgaagcttggattgtggccaatattggcat |
238011 |
T |
|
| Q |
251 |
ccaaaaaatcccttcgcgggtagtatttagctttgaggatccttgatagtaaagaggttgagtcggataagagtttccaactttgcttaccaagcataga |
350 |
Q |
| |
|
|||| ||||||| || ||| | |||||||||||||| || | | ||||| ||| | | || | || ||||||||||| ||| | |||||||||||| |
|
|
| T |
238012 |
ccaagaaatcccgacgagggaaatatttagctttgagaattcgagtgagtaaggagctaggatcagttaggagtttccaaccttgttaaccaagcataga |
238111 |
T |
|
| Q |
351 |
gaggtt |
356 |
Q |
| |
|
|||||| |
|
|
| T |
238112 |
gaggtt |
238117 |
T |
|
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