View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1328_low_4 (Length: 492)
Name: NF1328_low_4
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 91 - 475
Target Start/End: Original strand, 11903221 - 11903605
Alignment:
| Q |
91 |
ataatgtattcgaagttctttagctagcaatttgttttggattgaataatgaacttgaagtatgtttgttgatttgtcctgcagggaatggctaattaac |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11903221 |
ataatgtattcgaagttctttagctagcaatttgttttggattgaataatgaacttgaagtatgtttgttgatttgtcctgcagggaatggctaattaac |
11903320 |
T |
|
| Q |
191 |
ataagaggatttgcaaagaaattgagaagcacttcactctcttcagctgatcagatcaaggattgtggcgcatgtcgtgaatgtccaaactgtcatagtc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11903321 |
ataagaggatttgcaaagaaattgagaagcacttcactctcttcagctgatcagatcaaggattgtggcgcatgtcgtgaatgtccaaactgtcatagtc |
11903420 |
T |
|
| Q |
291 |
gcatagacaacagtgatgtatgttataaatttaaattttgtcgtcgtattcattttgagttcataatagctcattcaaaatatgcaccagaaacaggaaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11903421 |
gcatagacaacagtgatgtatgttataaatttaaattttgtcgttgtattcattttgagttcataatagctcattcaaaatatgcaccagaaacaggaaa |
11903520 |
T |
|
| Q |
391 |
atatgaagcaattgactatgctagtagaacgcccgatgtttctattgactttgcttatgctccaattcctataccctgcattttt |
475 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11903521 |
atttgaagcaattgactatgctagtagaacgcccgatgtttctattgactttgcttatgctccaattcctataccctgcattttt |
11903605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 11903111 - 11903176
Alignment:
| Q |
30 |
ttttgtgcatcggttctagtgtatcgtaagacatagtgattttatggcttaatagtgtatcataat |
95 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11903111 |
ttttgtgcatcggttctagtgtatcctaagacatagtgattttatggcttaatagtgtatcctaat |
11903176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 15663312 - 15663397
Alignment:
| Q |
293 |
atagacaacagtgatgtatgttataaatttaaattttgtc-gtcgtattcattttgagttcataatagctcattcaaaatatgcacc |
378 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| | |||||| | ||| |||||||||||||| ||||| ||||||| | |||||||| |
|
|
| T |
15663312 |
atagataacggtgatgtatgttataaatttataatttgtcatttgta-tcattttgagttcaaaatagttcattcacattatgcacc |
15663397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University