View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1328_low_5 (Length: 479)
Name: NF1328_low_5
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_5 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: scaffold0175 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 69 - 368
Target Start/End: Original strand, 27647 - 27941
Alignment:
| Q |
69 |
tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaatgccaagaattagtatatttttgtcaagnnnnnnnntaaata |
168 |
Q |
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|||||||||| ||||||||||||| ||||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||| |||||| |
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| T |
27647 |
tgaaatgtgtacattgtttgaaataaaatatttcatggattttgataacaacaataaatgtcaagaattagtatattt--gtcaagaaaaaa--taaata |
27742 |
T |
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| Q |
169 |
atgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatactatagcta |
268 |
Q |
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|||||||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27743 |
gtgtgattcattcttgaaatattcattcttaataaaa-agtggtgactataggttgtttgtgttaacatgaatcatttgtaaaattaaatactatagcta |
27841 |
T |
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| Q |
269 |
tgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttactattggaaagaagacatctttcgttagtaaaaagaagagtaaaatgca |
368 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
27842 |
tgagcctgtaacaggacgaacttcaaaattccaatccctaatatctcttttctattggaaagaaggcatatttcgttagtaaaaagaagagtaaaatgca |
27941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 69 - 368
Target Start/End: Complemental strand, 29276604 - 29276309
Alignment:
| Q |
69 |
tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaat-gccaagaattagtatatttttgtcaagnnnnnnnntaaat |
167 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||||| |||||| ||||| ||||| |
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| T |
29276604 |
tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataacaaaaaaaaaaagccaagaattagcatattt--gtcaa--caaaaaataaat |
29276509 |
T |
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| Q |
168 |
aatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatactatagct |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29276508 |
aatgtgattcattcttgaaacattcattcttaatagaaaagtggtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatactatagct |
29276409 |
T |
|
| Q |
268 |
atgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttactattggaaagaagacatctttcgttagtaaaaagaagagtaaaatgc |
367 |
Q |
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|||||| ||||||| ||||||||||||||||| ||||||||| |||||||| ||||||| |||||| ||| |||| |||||||||||||||||||||||| |
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| T |
29276408 |
atgagcatgtaacacgacaaacttcaaaattctaatccccaacatctcttttctattgg-aagaaggcatatttctttagtaaaaagaagagtaaaatgc |
29276310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 365 - 475
Target Start/End: Complemental strand, 29276273 - 29276166
Alignment:
| Q |
365 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
464 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29276273 |
tgcaatagtatcatattcctaagggaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
29276177 |
T |
|
| Q |
465 |
attattggaga |
475 |
Q |
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||||||||||| |
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| T |
29276176 |
attattggaga |
29276166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 69 - 328
Target Start/End: Original strand, 55857989 - 55858252
Alignment:
| Q |
69 |
tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaa--------aatgccaagaattagtatatttttgtcaagnnnnnn |
160 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| | | || || |||||||||||| |||||| ||||| |
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| T |
55857989 |
tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataacaaaaaaataaaaataaaagccaagaattagcatattt--gtcaa--caaaa |
55858084 |
T |
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| Q |
161 |
nntaaataatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatac |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55858085 |
aataaataatgtgattcattcttgaaacattcattcttaatagaaaaatggtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatac |
55858184 |
T |
|
| Q |
261 |
tatagctatgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttactattggaa |
328 |
Q |
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||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||| |
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| T |
55858185 |
tatagctatgagcatgtaacacgacaaacttcaaaattctaatccccgatatctcttttctattggaa |
55858252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 365 - 471
Target Start/End: Original strand, 55858319 - 55858422
Alignment:
| Q |
365 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
464 |
Q |
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|||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55858319 |
tgcaatagtatcatattcctaaggtaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
55858415 |
T |
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| Q |
465 |
attattg |
471 |
Q |
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||||||| |
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| T |
55858416 |
attattg |
55858422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 475
Target Start/End: Original strand, 31502728 - 31502812
Alignment:
| Q |
390 |
aagagcttgaaatataattaatggatcatcaca--agactttatacggtatagacatgtcccatcttatattgatatattattggaga |
475 |
Q |
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| T |
31502728 |
aagagcttgaaatatat---atggatcatcacacaagactttatacggtgtagacatgtcccatcctatattgatatattattggaga |
31502812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 368
Target Start/End: Original strand, 31502648 - 31502677
Alignment:
| Q |
339 |
tttcgttagtaaaaagaagagtaaaatgca |
368 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31502648 |
tttcgttagtaaaaagaagagtaaaatgca |
31502677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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