View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1328_low_6 (Length: 467)
Name: NF1328_low_6
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1328_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 42635803 - 42635344
Alignment:
| Q |
1 |
ctaaaaaactagatatatatctataaaaacatgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42635803 |
ctaaaaaactagatatatatctataaaaacatgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcat |
42635704 |
T |
|
| Q |
101 |
tatatagtataatatagttaagaatattctaatgctgccacaaagatgaagtttcacaacccaacaaagtacaatcagttagttagcaagataaatgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42635703 |
tatatagtataatatagttaagaatattctaatgctgccataaagatgaagtttcacaacccaacaaagtacaatcagttagttagcaagataaatgtta |
42635604 |
T |
|
| Q |
201 |
aggcttcaacaacactcaaataaagctacaataataaactagtaatacccttttaacagaaattaacattatcattatcatcaatatctataccctacag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42635603 |
aggcttcaacaacactcaaataaagctacaataataaactagtaatacccttttaacagaaattaacattatcattatcatcaatatctataccctacag |
42635504 |
T |
|
| Q |
301 |
gcattccaagtttatccaaacgaccagaaccaggatagcctttgctagtgaagcttgcttgcaatgcagatgttctctgtgcagccaatcttgccatgtc |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42635503 |
gcattccaagcttatccaaacgaccagaaccaggatagcctttgctagtgaagcttgcttgcaatgcagatgttctctgtgcggccaatcttgccatgtc |
42635404 |
T |
|
| Q |
401 |
gtgtccatttagtgagtacctatttgacgaactcgatttctcatattgaggcctttgttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42635403 |
gtgtccatttagtgagtacctatttgacgaacttgatttctcatattgaggcctttgttt |
42635344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 460
Target Start/End: Original strand, 44095779 - 44096221
Alignment:
| Q |
10 |
tagatatatatctataaaaacatgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcattatatagta |
109 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| || || ||||||| ||| |
|
|
| T |
44095779 |
tagatatataactataacaccatgctaggaataggaaataaccttctgacaaaaattctagagaaactaaagtaaattcttctattagcattat---gta |
44095875 |
T |
|
| Q |
110 |
taatatagttaagaatattctaatgctgccaca-------aagatgaagtttcacaacccaacaaagtacaatcagttagttagcaagataaatgttaag |
202 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44095876 |
taatatagttaa-agtattctaatgctgccacagcccacaaagatgaagtttcacaacacaacaaagtacaacgagttagttagcaagataaatgttaag |
44095974 |
T |
|
| Q |
203 |
gcttcaacaacactcaaataaagctacaataataaactagtaatacccttttaacagaaattaacattatcattatcatcaatatctataccctacaggc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44095975 |
acttcaacaacactcaaataaagctacaaaaatat-cta----taccctttaaacataaattaacatt------atcatcaatatctataccctacagga |
44096063 |
T |
|
| Q |
303 |
attccaagtttatccaaacgaccagaaccaggatagcctttgctagtgaagcttgcttgcaatgcagatgttctctgtgcagccaatcttgccatgtcgt |
402 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44096064 |
attccaagcttatccaaacgaccagaaccaggatagactttgctagtgaagcttgcttgcaatgtagatgttctctgtgcggccaatcttgccatgtcgt |
44096163 |
T |
|
| Q |
403 |
gtccatttagtgagtacctatttgacgaactcgatttctcatattgaggcctttgttt |
460 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44096164 |
gtccattgagtgagtacctatttgacgaacccgatttctcatattgaggcctttgttt |
44096221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University