View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1328_low_8 (Length: 444)

Name: NF1328_low_8
Description: NF1328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1328_low_8
NF1328_low_8
[»] scaffold0250 (1 HSPs)
scaffold0250 (8-388)||(3326-3708)
[»] chr7 (16 HSPs)
chr7 (214-339)||(10710765-10710893)
chr7 (144-205)||(10711037-10711098)
chr7 (92-145)||(23826285-23826338)
chr7 (92-144)||(4049984-4050036)
chr7 (92-147)||(45697483-45697538)
chr7 (92-145)||(19645064-19645117)
chr7 (92-144)||(21505614-21505666)
chr7 (97-143)||(21748082-21748128)
chr7 (93-143)||(41243908-41243958)
chr7 (95-144)||(18504505-18504554)
chr7 (95-144)||(35614087-35614136)
chr7 (94-143)||(36580274-36580323)
chr7 (95-143)||(10097791-10097839)
chr7 (92-144)||(14247293-14247345)
chr7 (92-144)||(17876420-17876472)
chr7 (92-144)||(28350115-28350167)
[»] chr6 (10 HSPs)
chr6 (92-145)||(3579593-3579646)
chr6 (92-148)||(30349619-30349675)
chr6 (92-149)||(1377469-1377526)
chr6 (92-149)||(1385217-1385274)
chr6 (95-144)||(30349348-30349397)
chr6 (94-150)||(2840782-2840838)
chr6 (92-144)||(12766477-12766529)
chr6 (95-145)||(238928-238978)
chr6 (92-145)||(2164418-2164471)
chr6 (92-145)||(2176051-2176104)
[»] chr8 (10 HSPs)
chr8 (92-149)||(17070901-17070958)
chr8 (92-149)||(17577314-17577371)
chr8 (94-147)||(23702119-23702172)
chr8 (92-138)||(22192307-22192353)
chr8 (92-145)||(39889770-39889823)
chr8 (92-144)||(37813161-37813213)
chr8 (94-145)||(30539256-30539306)
chr8 (92-146)||(28349570-28349624)
chr8 (95-149)||(35213025-35213079)
chr8 (95-140)||(37263361-37263406)
[»] chr1 (14 HSPs)
chr1 (91-140)||(45739195-45739244)
chr1 (92-144)||(39642199-39642251)
chr1 (95-141)||(18632319-18632365)
chr1 (95-145)||(25085397-25085447)
chr1 (94-144)||(46573092-46573142)
chr1 (95-143)||(48319672-48319719)
chr1 (92-142)||(5287837-5287887)
chr1 (91-141)||(18632601-18632651)
chr1 (94-140)||(46912193-46912239)
chr1 (92-145)||(5287248-5287301)
chr1 (95-144)||(17760957-17761006)
chr1 (96-145)||(25486479-25486528)
chr1 (92-144)||(3377500-3377552)
chr1 (95-139)||(25486217-25486261)
[»] chr5 (16 HSPs)
chr5 (93-148)||(39574234-39574289)
chr5 (96-145)||(20629734-20629783)
chr5 (92-144)||(20512462-20512514)
chr5 (92-148)||(32391714-32391770)
chr5 (92-145)||(2974897-2974950)
chr5 (92-145)||(12406039-12406092)
chr5 (92-145)||(27904746-27904799)
chr5 (95-143)||(586678-586726)
chr5 (95-143)||(40132904-40132952)
chr5 (94-144)||(36798441-36798491)
chr5 (95-140)||(3999089-3999134)
chr5 (95-140)||(43098031-43098076)
chr5 (95-147)||(24405486-24405538)
chr5 (92-140)||(25364088-25364136)
chr5 (94-145)||(35166557-35166609)
chr5 (92-144)||(36798169-36798221)
[»] chr3 (21 HSPs)
chr3 (95-146)||(28204477-28204528)
chr3 (95-149)||(54718988-54719042)
chr3 (92-140)||(43747282-43747330)
chr3 (93-144)||(17773169-17773220)
chr3 (93-144)||(19074470-19074521)
chr3 (92-146)||(86827-86881)
chr3 (91-145)||(28944227-28944281)
chr3 (95-145)||(46226953-46227003)
chr3 (92-145)||(51315747-51315800)
chr3 (390-422)||(31581832-31581864)
chr3 (95-143)||(33329611-33329659)
chr3 (93-145)||(36677522-36677574)
chr3 (93-145)||(36687604-36687656)
chr3 (96-147)||(14349375-14349426)
chr3 (96-142)||(19404399-19404445)
chr3 (91-132)||(25248947-25248988)
chr3 (97-142)||(27178141-27178186)
chr3 (92-149)||(44127610-44127667)
chr3 (95-147)||(3193047-3193099)
chr3 (95-143)||(14856546-14856594)
chr3 (92-140)||(44586049-44586097)
[»] scaffold1458 (1 HSPs)
scaffold1458 (92-149)||(1465-1522)
[»] scaffold0515 (1 HSPs)
scaffold0515 (92-149)||(3633-3690)
[»] scaffold0306 (1 HSPs)
scaffold0306 (92-149)||(3633-3690)
[»] chr2 (13 HSPs)
chr2 (92-149)||(5362169-5362226)
chr2 (92-145)||(14489473-14489526)
chr2 (92-149)||(19206136-19206193)
chr2 (91-143)||(18709247-18709299)
chr2 (96-145)||(34761127-34761176)
chr2 (92-140)||(43029057-43029104)
chr2 (93-140)||(6510263-6510310)
chr2 (94-151)||(14943808-14943865)
chr2 (28-77)||(34100807-34100856)
chr2 (91-140)||(37431799-37431848)
chr2 (92-144)||(14489213-14489265)
chr2 (92-144)||(21358368-21358420)
chr2 (92-144)||(34679096-34679148)
[»] chr4 (13 HSPs)
chr4 (93-145)||(6614845-6614897)
chr4 (92-144)||(23759560-23759612)
chr4 (92-144)||(35383764-35383816)
chr4 (92-144)||(43074615-43074667)
chr4 (94-145)||(1420809-1420860)
chr4 (94-145)||(35393934-35393985)
chr4 (91-145)||(2017050-2017104)
chr4 (92-146)||(44356660-44356713)
chr4 (95-145)||(51362806-51362856)
chr4 (95-140)||(3658190-3658235)
chr4 (104-145)||(34771270-34771311)
chr4 (92-140)||(14449276-14449324)
chr4 (92-144)||(19909172-19909224)
[»] scaffold0809 (1 HSPs)
scaffold0809 (95-149)||(3023-3077)
[»] scaffold0286 (1 HSPs)
scaffold0286 (92-145)||(17938-17991)
[»] scaffold0025 (2 HSPs)
scaffold0025 (97-146)||(19037-19086)
scaffold0025 (92-140)||(19604-19652)
[»] scaffold0062 (1 HSPs)
scaffold0062 (96-144)||(46075-46123)


Alignment Details
Target: scaffold0250 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 3708 - 3326
Alignment:
Q  8 ccaataatatggcagtagagttgggggtcaaaactgctacagtcgcgaaatttaagggacggtttcatagnnnnnnnnnn--agtaggccaaaatcgcaa 105  Q
    |||| |||||||| |||||||||||| | |||||||||||||| |||||||||| |||||||||| ||||            ||||||||||||||| ||    
T  3708 ccaacaatatggctgtagagttggggtt-aaaactgctacagttgcgaaatttaggggacggttttatagttttttttttctagtaggccaaaatcgtaa 3610  T
Q  106 ctttgtgaaagttaaaggacgaaaactgctattaagcctattttctaacatcaaaatagtctctatattgtcaccaagacaaacacttccttcaccttta 205  Q
    |||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3609 ctttgtgaaagttagaaggcgaaaactgctattaagcttattttctaacatcaaaatagtctctatattgtcaccaagacaaacacttccttcaccttta 3510  T
Q  206 tacgcagggttagttgaataggaatgagaatcctgagtttcactc-aacataatttgtcataccaaaattacctaccttaccacaaaattgttcatctaa 304  Q
    |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3509 tacgcagggttagttgaataggaatgagaatcctcagtttcactctaaaataatttgtcataccaaaattacctaccttaccacaaaattgttcatcaaa 3410  T
Q  305 aagatgttcctactctttacatttatatgcacatagtttggattcatcaagacaaatcataacattgtggatgtaattcaaagc 388  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3409 aagatgttcctgctctttacatttatatgcacatagtttggattcatcaagacaaatcataacattgtgcatgtaattcaaagc 3326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 339
Target Start/End: Complemental strand, 10710893 - 10710765
Alignment:
Q  214 gttagttgaataggaatgagaatcctgagtttca--ctcaacataatttgtcataccaaaattacctaccttaccacaaaattgttcatctaaaa-gatg 310  Q
    ||||||||||||  | |||| ||||| |||||||  ||||||| || ||| ||||||||||||||||| |||| |||  |||| ||||||||||| ||||    
T  10710893 gttagttgaataaaattgaggatcctcagtttcattctcaacaaaacttgccataccaaaattacctaacttagcaccgaattcttcatctaaaaagatg 10710794  T
Q  311 ttcctactctttacatttatatgcacata 339  Q
    ||||||||||| |||||| ||||||||||    
T  10710793 ttcctactcttcacatttctatgcacata 10710765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 10711098 - 10711037
Alignment:
Q  144 tattttctaacatcaaaatagtctctatattgtcaccaagacaaacacttccttcaccttta 205  Q
    |||||||| |||||||||| |||| ||| ||||||| ||| |||||||||||||||||||||    
T  10711098 tattttctgacatcaaaattgtctttattttgtcactaagccaaacacttccttcaccttta 10711037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 23826285 - 23826338
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||||||  |||| |||||||||||||||||||    
T  23826285 ggccaaaatcgcaacttcgtgaaagttaggggacaaaaactgctattaagccta 23826338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 4049984 - 4050036
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||| |||||| ||||||||||| || ||||||||||||||||||||    
T  4049984 ggccaaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagcct 4050036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 45697538 - 45697483
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatt 147  Q
    ||||||||||||||||| | ||||||||  |||||||||||| |||||||||||||    
T  45697538 ggccaaaatcgcaacttcgagaaagttaggggacgaaaactgttattaagcctatt 45697483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 19645064 - 19645117
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||||||| || |||||| ||||||||| ||||    
T  19645064 ggccaaaatcgcaacttcgtgaaagttaaggggcgaaaattgctattaaaccta 19645117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 21505666 - 21505614
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||| |||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  21505666 ggcccaaattgcaacttcgtgaaagttaagggacgaaagctgctattaagcct 21505614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 21748082 - 21748128
Alignment:
Q  97 aaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||||||| ||||||||||  || |||||||||||||||||||    
T  21748082 aaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcc 21748128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 41243908 - 41243958
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||||| ||||||||||||||||  |  |||||||||||||||||||    
T  41243908 gccaaaatcgtaactttgtgaaagttagggaccgaaaactgctattaagcc 41243958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 18504505 - 18504554
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||  |||||||||  |||||||||||| ||||||||||    
T  18504505 caaaatcgcaacttcatgaaagttaggggacgaaaactgttattaagcct 18504554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 35614136 - 35614087
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||| |||||||||||||  ||||||| |||| |||||    
T  35614136 caaaatcgcaactttgagaaagttaaaggattaaaactgttattgagcct 35614087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 36580323 - 36580274
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||| |||||| ||||||||||  || |||||||||||||||||||    
T  36580323 ccaaaatcacaacttcgtgaaagttaggggccgaaaactgctattaagcc 36580274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 10097791 - 10097839
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||||||||||| |||||||||| | | |||| ||||||||||||    
T  10097791 caaaatcgcaactttgagaaagttaaatggctaaaattgctattaagcc 10097839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 14247345 - 14247293
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||| |||||| ||||||||||   | ||||||||||||||||||||    
T  14247345 ggccaaaatcacaacttcgtgaaagttaggtggcgaaaactgctattaagcct 14247293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 17876420 - 17876472
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||| ||||| ||||||||||  ||  |||||||||||||||||||    
T  17876420 ggccaaaatcgtaacttcgtgaaagttagggggtgaaaactgctattaagcct 17876472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 28350167 - 28350115
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||| ||||| ||||||||||  || | ||||||||||||||||||    
T  28350167 ggccaaaatcgtaacttcgtgaaagttagggggctaaaactgctattaagcct 28350115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 3579646 - 3579593
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  3579646 ggccaaaatcgcaacttcgtgaaagttaagggacgaaaactgctattaagccta 3579593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 30349619 - 30349675
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctattt 148  Q
    |||||||||||||||||||  |||||||  |||| ||||||||||||||||||||||    
T  30349619 ggccaaaatcgcaactttgaaaaagttaggggacaaaaactgctattaagcctattt 30349675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 1377469 - 1377526
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||| ||||||||||  |||||||||||| |||||| ||| ||||    
T  1377469 ggccaaaatcgcaacttcgtgaaagttaggggacgaaaactgatattaaacctttttt 1377526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 1385217 - 1385274
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||| ||||||||||  |||||||||||| |||||| ||| ||||    
T  1385217 ggccaaaatcgcaacttcgtgaaagttaggggacgaaaactgatattaaacctttttt 1385274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 30349397 - 30349348
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||| |||||||| ||| | ||||||||||||||||||    
T  30349397 caaaatcgcaactttgggaaagttagagggctaaaactgctattaagcct 30349348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 2840838 - 2840782
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctattttc 150  Q
    |||||||||||||||||| ||||||  ||  |||||||||||||||||| |||||||    
T  2840838 ccaaaatcgcaactttgtaaaagttggagagcgaaaactgctattaagcttattttc 2840782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 12766477 - 12766529
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||||| ||||||||||  ||  |||||||||||||||||||    
T  12766477 ggccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcct 12766529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 238978 - 238928
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||| |||||| |||  || |||||||||||||||||||||    
T  238978 caaaatcgcaacttcgtgaaaattagggggcgaaaactgctattaagccta 238928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 2164471 - 2164418
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||||| ||| | ||| ||||  |||||||||||||||||||    
T  2164471 ggccaaaatcgcaactttatgatacttagaggatcaaaactgctattaagccta 2164418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 2176104 - 2176051
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||||| ||| | ||| ||||  |||||||||||||||||||    
T  2176104 ggccaaaatcgcaactttatgatacttagaggatcaaaactgctattaagccta 2176051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 17070958 - 17070901
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||    
T  17070958 ggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcctttttt 17070901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 17577314 - 17577371
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||    
T  17577314 ggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcctttttt 17577371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 23702172 - 23702119
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatt 147  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  23702172 ccaaaatcgtaactttgtgaaagttaaggggcgaaaactgctattaagcctatt 23702119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 22192353 - 22192307
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctatt 138  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||    
T  22192353 ggccaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctatt 22192307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 39889823 - 39889770
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||| ||||||| |||||||||||  | |||||||||||||||||||||    
T  39889823 ggccaaaattgcaacttcgtgaaagttaagaggcgaaaactgctattaagccta 39889770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 37813213 - 37813161
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||| || |||||||||||||  || ||||||||||||||||||||    
T  37813213 ggccaaaatcgtaaatttgtgaaagttagggggcgaaaactgctattaagcct 37813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 30539256 - 30539306
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||| |||| | |||||||||||||||||||    
T  30539256 ccaaaatcgcaactttgggaaagtt-aagggctaaaactgctattaagccta 30539306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 28349570 - 28349624
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctat 146  Q
    ||||||||||||||||||| ||||||||  || | |||||| |||||||||||||    
T  28349570 ggccaaaatcgcaactttgggaaagttagggggctaaaactactattaagcctat 28349624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 35213079 - 35213025
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||| |||||||  || ||||||| |||||||||||| ||||    
T  35213079 caaaatcgcaactttgtcaaagttagtgggcgaaaaccgctattaagcctttttt 35213025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 37263406 - 37263361
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||||||| || |||||||| || ||||||||||||||||    
T  37263406 caaaatcgcaacttcgtaaaagttaaggggcgaaaactgctattaa 37263361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 45739195 - 45739244
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  45739195 aggccaaaatcgcaacttcgtgaaagttaaaggacgaaaactactattaa 45739244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 39642251 - 39642199
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  39642251 ggccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcct 39642199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 18632365 - 18632319
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaag 141  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||    
T  18632365 caaaatcgcaactttgtgaaagttaagggactaaaactgcaattaag 18632319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 25085447 - 25085397
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||| |||||||||  || |||||||||||||||||||||    
T  25085447 caaaatcgcaactttatgaaagttagggggcgaaaactgctattaagccta 25085397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 46573092 - 46573142
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  46573092 ccaaaatcgcaacttcgtaaaagttagaggacaaaaactgctattaagcct 46573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 48319672 - 48319719
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||||    
T  48319672 caaaatagcaactttgtgaaagttag-ggacgaaaactgctattaagcc 48319719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 5287837 - 5287887
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagc 142  Q
    ||||||||||||||||||| ||||||||| ||   ||||||||||||||||    
T  5287837 ggccaaaatcgcaactttgagaaagttaaggggttaaaactgctattaagc 5287887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 18632601 - 18632651
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaag 141  Q
    |||||||||||||||||| || |||||||  || |||||||||||||||||    
T  18632601 aggccaaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaag 18632651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 46912239 - 46912193
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  46912239 ccaaaatcgcaacttcgtgaaagttaaggagcgaaaactgctattaa 46912193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 5287301 - 5287248
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||||||| || |||| ||||  ||||||||||    
T  5287301 ggccaaaatcgcaacttcgtgaaagttaagggccgaacactgtaattaagccta 5287248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 17760957 - 17761006
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||| ||||||| || ||||||||  ||||||||||||||||||||||    
T  17760957 caaaattgcaacttcgtaaaagttaagagacgaaaactgctattaagcct 17761006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 25486479 - 25486528
Alignment:
Q  96 aaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||| ||||||||||  || | |||||||||||||||||||    
T  25486479 aaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagccta 25486528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 3377552 - 3377500
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||||||  |||||||  || | ||||||||||||||||||    
T  3377552 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcct 3377500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 25486261 - 25486217
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctatta 139  Q
    ||||||| |||||||| ||||||||| |||| |||||||||||||    
T  25486261 caaaatcacaactttgagaaagttaagggactaaaactgctatta 25486217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 39574289 - 39574234
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctattt 148  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||    
T  39574289 gccaaaatcgcaacttcgtgaaagttagagggcgaaaactgctattaagcttattt 39574234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 20629783 - 20629734
Alignment:
Q  96 aaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||||||||||| || |||||||||||||||| ||||    
T  20629783 aaaatcgcaactttgtgaaagttaaggggcgaaaactgctattaaaccta 20629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 20512462 - 20512514
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||||||    
T  20512462 ggccaaaatcgcaacttcgtgaaagttaagaggcgaaaactgctattaagcct 20512514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 32391770 - 32391714
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctattt 148  Q
    |||||||||| |||||| ||||||||||| || |||||||||||||||||| |||||    
T  32391770 ggccaaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagcttattt 32391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 2974897 - 2974950
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||||||  || | |||||||||||||||||||    
T  2974897 ggccaaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagccta 2974950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 12406092 - 12406039
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||||| ||||||||  || | |||||||||||||||||||    
T  12406092 ggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagccta 12406039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 27904746 - 27904799
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||||||  ||||||| ||| | |||||||||||||||||||    
T  27904746 ggccaaaatcgcaactttgaaaaagttagagggctaaaactgctattaagccta 27904799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 586678 - 586726
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||||||    
T  586678 caaaatcgcaacttcatgaaagttagaggacgaaaattgctattaagcc 586726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 40132952 - 40132904
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    ||||||||||||||||  ||||||| ||||| |||||||||||||||||    
T  40132952 caaaatcgcaactttgaaaaagttagaggactaaaactgctattaagcc 40132904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 36798441 - 36798491
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||||| ||||||||  || | ||||||||||||||||||    
T  36798441 ccaaaatcgcaactttgagaaagttagggggctaaaactgctattaagcct 36798491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 3999134 - 3999089
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||||||| ||||||||||  || ||||||||||||||||    
T  3999134 caaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaa 3999089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 43098076 - 43098031
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||||||| || |||||||  |||||||||||||||||||    
T  43098076 caaaatcgcaacttcgtaaaagttaggggacgaaaactgctattaa 43098031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 24405538 - 24405486
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatt 147  Q
    ||||||||||||||||  |||||||  |||| |||||||||||||| ||||||    
T  24405538 caaaatcgcaactttgaaaaagttaggggactaaaactgctattaaacctatt 24405486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 25364088 - 25364136
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||| ||||||| |||||||||| |||  |||||||||||||||    
T  25364088 ggccaaaattgcaacttcgtgaaagttagagggtgaaaactgctattaa 25364136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 35166557 - 35166609
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagtta-aaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||| ||||||||||   || |||||||||||||||||||||    
T  35166557 ccaaaatcgcaacttcgtgaaagttaggggggcgaaaactgctattaagccta 35166609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 36798221 - 36798169
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||| |||||||||  |||||||| || | ||||||||||||||||||    
T  36798221 ggccaaaattgcaactttggaaaagttaagggtctaaaactgctattaagcct 36798169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 28204528 - 28204477
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctat 146  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||    
T  28204528 caaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcctat 28204477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 54719042 - 54718988
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||    
T  54719042 caaaatcgcaacttcgtgaaagttagtggacgaaaactgctattaagcctttttt 54718988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 43747330 - 43747282
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  43747330 ggccaaaatcgcaacttcgtaaaagttataggacgaaaactgctattaa 43747282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 17773220 - 17773169
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  17773220 gccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcct 17773169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 19074521 - 19074470
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  19074521 gccaaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcct 19074470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 86827 - 86881
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctat 146  Q
    |||||||||||||||||  |||||||||  ||||||||||| |||||||||||||    
T  86827 ggccaaaatcgcaacttcatgaaagttaggggacgaaaactcctattaagcctat 86881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 28944227 - 28944281
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||||| || |||||||  |||| |||||||||||||||||||    
T  28944227 aggccaaaatcgcaacttagtaaaagttaggggacaaaaactgctattaagccta 28944281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 46226953 - 46227003
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||| ||||    
T  46226953 caaaatcgcaacttcgtgaaagttaggggacgaaaactgctattaatccta 46227003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 51315747 - 51315800
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||||| ||||||||  || | |||||||||||||||||||    
T  51315747 ggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagccta 51315800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 31581864 - 31581832
Alignment:
Q  390 ctagctgttgcattcaaatccaatggatatttt 422  Q
    |||||||||||||||||||||||||||||||||    
T  31581864 ctagctgttgcattcaaatccaatggatatttt 31581832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 33329659 - 33329611
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||||||||| || ||||||| ||| |||||||||||||||||||    
T  33329659 caaaatcgcaacttcgtaaaagttagagggcgaaaactgctattaagcc 33329611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 36677574 - 36677522
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||| ||||||||||  || ||||||||| |||||||||||    
T  36677574 gccaaaatcgcaacttcgtgaaagttagcgggcgaaaactgttattaagccta 36677522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 36687656 - 36687604
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||| ||||||||||  || ||||||||| |||||||||||    
T  36687656 gccaaaatcgcaacttcgtgaaagttagcgggcgaaaactgttattaagccta 36687604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 14349375 - 14349426
Alignment:
Q  96 aaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatt 147  Q
    ||||||||||||| || |||||||  || |||||||||||||||||||||||    
T  14349375 aaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaagcctatt 14349426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 19404445 - 19404399
Alignment:
Q  96 aaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagc 142  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||||||    
T  19404445 aaaatcgcaacttcgtgaaagttaggggacgaaaactgttattaagc 19404399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 25248947 - 25248988
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaact 132  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  25248947 aggccaaaatcgcaacttcgtgaaaattaaagggcgaaaact 25248988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 27178186 - 27178141
Alignment:
Q  97 aaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagc 142  Q
    |||||||||||| || |||||||  |||||||||||||||||||||    
T  27178186 aaatcgcaacttcgtaaaagttaggggacgaaaactgctattaagc 27178141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 44127610 - 44127667
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||||| |||| ||| ||    |||||||||||||||||||||||    
T  44127610 ggccaaaatcgcaactttgagaaaattagagagttaaaactgctattaagcctatttt 44127667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 3193047 - 3193099
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatt 147  Q
    ||||||||||||||  |||||||||  ||  ||||||||||||||||||||||    
T  3193047 caaaatcgcaacttcttgaaagttagggggtgaaaactgctattaagcctatt 3193099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 14856594 - 14856546
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||||||||| ||||||||||  |  |||||||||||||||||||    
T  14856594 caaaatcgcaacttcgtgaaagttagggtgcgaaaactgctattaagcc 14856546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 44586049 - 44586097
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||||||||||||| ||||||||  || | ||||||||||||||    
T  44586049 ggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaa 44586097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 1522 - 1465
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    |||||||||| |||||||||||||||||  || | |||||||||||||||||||||||    
T  1522 ggccaaaatctcaactttgtgaaagttagggggctaaaactgctattaagcctatttt 1465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 3690 - 3633
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||||| ||||||||  || | |||||||||||||||||||||||    
T  3690 ggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcctatttt 3633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 3690 - 3633
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||||| ||||||||  || | |||||||||||||||||||||||    
T  3690 ggccaaaatcgcaactttgggaaagttagggggctaaaactgctattaagcctatttt 3633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 5362226 - 5362169
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    ||||||||||||||||||||||||||||  || |||||| | ||||||||||||||||    
T  5362226 ggccaaaatcgcaactttgtgaaagttagggggcgaaaattactattaagcctatttt 5362169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 14489473 - 14489526
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||||| ||||||||||  || |||||||||||||||||||||    
T  14489473 ggccaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagccta 14489526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 19206193 - 19206136
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    |||||||||||||||||||||||| |||  || |||||| ||||||||||||||||||    
T  19206193 ggccaaaatcgcaactttgtgaaaattagggggcgaaaattgctattaagcctatttt 19206136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 18709299 - 18709247
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcc 143  Q
    |||||||||||| ||||| ||||||||||  ||||||||||||||||||||||    
T  18709299 aggccaaaatcgaaacttcgtgaaagttaggggacgaaaactgctattaagcc 18709247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 34761127 - 34761176
Alignment:
Q  96 aaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||| ||||    
T  34761127 aaaatcgcaacttcgtgaaagttaggggacgaaaactgctattaaaccta 34761176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 43029057 - 43029104
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  43029057 ggccaaaatcgcaactttgtgaaagtt-aagggcaaaaactgctattaa 43029104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 6510263 - 6510310
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||||||||||  ||||||||| ||| ||||||||||||||||    
T  6510263 gccaaaatcgcaacttcatgaaagttagagggcgaaaactgctattaa 6510310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 14943808 - 14943865
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctattttct 151  Q
    |||||||| ||||||||  |||||||| || | |||||||||||||||||| ||||||    
T  14943808 ccaaaatcacaactttggaaaagttaaggggctaaaactgctattaagccttttttct 14943865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 34100856 - 34100807
Alignment:
Q  28 ttgggggtcaaaactgctacagtcgcgaaatttaagggacggtttcatag 77  Q
    ||||||||||||||||||||||| || ||| ||| |||||||||| ||||    
T  34100856 ttgggggtcaaaactgctacagttgcaaaacttaggggacggttttatag 34100807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 37431799 - 37431848
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||||||||||| ||| ||||||  || ||||||||||||||||    
T  37431799 aggccaaaatcgcaacttcgtggaagttagggggcgaaaactgctattaa 37431848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 14489265 - 14489213
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||| |||||||  |||||||| ||| | ||||||||||||||||||    
T  14489265 ggccaaaatcacaacttttggaaagttagagggctaaaactgctattaagcct 14489213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 21358368 - 21358420
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||| |||||||| ||||||||  || | ||||||||||||||||||    
T  21358368 ggccaaaatcacaactttgagaaagttagggggcaaaaactgctattaagcct 21358420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 34679148 - 34679096
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||||||  |||||||  || | ||||||||||||||||||    
T  34679148 ggccaaaatcgcaactttggaaaagttagggggctaaaactgctattaagcct 34679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 6614897 - 6614845
Alignment:
Q  93 gccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  6614897 gccaaaatcgcaacttcgtgaaagttaagggtcgaaaaatgctattaagccta 6614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 23759612 - 23759560
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||||||||||| |||||||||  || |||||||| |||||||||||    
T  23759612 ggccaaaatcgcaactttatgaaagttagggggcgaaaactactattaagcct 23759560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 35383816 - 35383764
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    |||||||||| |||||| ||||||||||  || ||||||||||||||||||||    
T  35383816 ggccaaaatcacaacttcgtgaaagttagggggcgaaaactgctattaagcct 35383764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 43074667 - 43074615
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||||| ||||||||||  || |||||| |||||||||||||    
T  43074667 ggccaaaatcgcaacttcgtgaaagttagggggcgaaaattgctattaagcct 43074615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 1420809 - 1420860
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||| ||||||| ||||||||| || | |||||||||||||||||||    
T  1420809 ccaaaatcgtaactttgggaaagttaaggggctaaaactgctattaagccta 1420860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 35393934 - 35393985
Alignment:
Q  94 ccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||||||||||| ||||||||||  ||  ||||||||||||||||||||    
T  35393934 ccaaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagccta 35393985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 2017050 - 2017104
Alignment:
Q  91 aggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||||||  ||||||||  || | |||||||||||||||||||    
T  2017050 aggccaaaatcgcaactttaggaaagttatggggctaaaactgctattaagccta 2017104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 44356660 - 44356713
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctat 146  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||||||    
T  44356660 ggccaaaatcgcaactttgagaaagtt-aggggctaaaactgctattaagcctat 44356713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 51362806 - 51362856
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    ||||||| ||||||||| |||||||  ||||||||||||||||||| ||||    
T  51362806 caaaatcacaactttgtaaaagttaggggacgaaaactgctattaaaccta 51362856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 3658190 - 3658235
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    ||||||||||||||  | ||||||| ||||||||||||||||||||    
T  3658190 caaaatcgcaacttcataaaagttagaggacgaaaactgctattaa 3658235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 34771311 - 34771270
Alignment:
Q  104 aactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||| ||| ||||||||| |||||||||||    
T  34771311 aactttgtgaaagttagagggcgaaaactgttattaagccta 34771270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 14449324 - 14449276
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||| |||||| ||||||||||  || ||||||||||||||||    
T  14449324 ggccaaaatctcaacttcgtgaaagttagggggcgaaaactgctattaa 14449276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 19909224 - 19909172
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||||||||| ||||||||  ||   ||||||||||||||||||    
T  19909224 ggccaaaatcgcaactttgagaaagttagggggttaaaactgctattaagcct 19909172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 3023 - 3077
Alignment:
Q  95 caaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctatttt 149  Q
    |||||||||||||||| ||||||||  | || |||||||||||||| ||||||||    
T  3023 caaaatcgcaactttgagaaagttagggaactaaaactgctattaatcctatttt 3077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 17938 - 17991
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagccta 145  Q
    |||||||||||||||||| ||| | ||| ||||  |||||||||||||||||||    
T  17938 ggccaaaatcgcaactttatgatacttagaggatcaaaactgctattaagccta 17991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 19086 - 19037
Alignment:
Q  97 aaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcctat 146  Q
    ||||| |||||| ||||||||||| || |||||||| |||||||||||||    
T  19086 aaatcacaacttcgtgaaagttaaggggcgaaaactactattaagcctat 19037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 19604 - 19652
Alignment:
Q  92 ggccaaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaa 140  Q
    |||||||||||||||||||  |||||||  |||| ||||||||||||||    
T  19604 ggccaaaatcgcaactttgaaaaagttaggggactaaaactgctattaa 19652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 46123 - 46075
Alignment:
Q  96 aaaatcgcaactttgtgaaagttaaaggacgaaaactgctattaagcct 144  Q
    ||||||||||||| ||||||||||  || ||||||||||||| ||||||    
T  46123 aaaatcgcaacttcgtgaaagttagggggcgaaaactgctataaagcct 46075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University