View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13290_high_1 (Length: 398)
Name: NF13290_high_1
Description: NF13290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13290_high_1 |
 | |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 35106172 - 35105791
Alignment:
| Q |
18 |
gtttgccgttttccaatttgaggcaaggagccgaagcttccaattcttccatggactccaatagcttccaaagctgtagatacgatgtgtttataagttt |
117 |
Q |
| |
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||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| | |||| | ||||||| ||||||||| |||||||| ||||| |
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| T |
35106172 |
gtttgccattttcaaatttgagacaaggagctgaagcttccaattcttccatggattttaataacgatcaaagctatagatacgacgtgtttatcagttt |
35106073 |
T |
|
| Q |
118 |
tagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaa |
217 |
Q |
| |
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|||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106072 |
cagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaa |
35105973 |
T |
|
| Q |
218 |
ggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttgg |
317 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||||||||||||||| ||||||||||||| ||||| |||||||||| |
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| T |
35105972 |
ggagaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttgg |
35105873 |
T |
|
| Q |
318 |
aagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgatgatg-tccatctca |
398 |
Q |
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|||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
35105872 |
aagagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgatgttgatccatctca |
35105791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 61 - 386
Target Start/End: Complemental strand, 35184078 - 35183753
Alignment:
| Q |
61 |
ttcttccatggactccaatagcttccaaagctgtagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttat |
160 |
Q |
| |
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|||||||| || ||||||||| ||||||||| |||||| ||||||||||| ||||| | ||| ||||| |||| |||||||||| |||||||| || |
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| T |
35184078 |
ttcttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcat |
35183979 |
T |
|
| Q |
161 |
gctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagtt |
260 |
Q |
| |
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|||||||||| || ||||||||||| || ||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35183978 |
gctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagtt |
35183879 |
T |
|
| Q |
261 |
caagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaaca |
360 |
Q |
| |
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| | ||||||||||||||||||||| ||| ||||| || ||||| | ||||||||||||||||| ||||||||||||| ||| | |||||||||| |
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| T |
35183878 |
ctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctgaatatcatacagaattgaaaca |
35183779 |
T |
|
| Q |
361 |
aactgttttccctggtttttatgatg |
386 |
Q |
| |
|
|||||||||||| ||||||||||| |
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| T |
35183778 |
gactgttttccctattttttatgatg |
35183753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 104 - 386
Target Start/End: Complemental strand, 35055173 - 35054891
Alignment:
| Q |
104 |
gtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatc |
203 |
Q |
| |
|
||||| || |||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
35055173 |
gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgaca |
35055074 |
T |
|
| Q |
204 |
aaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattc |
303 |
Q |
| |
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|||| |||||||||||||||| |||||||||| |||||||||||||||| || ||| |||||| |||||||||||||||| ||| ||||||||| || |
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| T |
35055073 |
aaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatc |
35054974 |
T |
|
| Q |
304 |
aacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgatg |
386 |
Q |
| |
|
||| ||||||||||||||||||||| | |||||||| || ||| | || |||||||| ||||||||| ||||||||||| |
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|
| T |
35054973 |
aacttggtgtttggaagagatggctgcaattgctgattgttgtgagtatttcaaacaaacagttttccctattttttatgatg |
35054891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 97 - 385
Target Start/End: Complemental strand, 35178044 - 35177756
Alignment:
| Q |
97 |
atacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttcaag |
196 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
35178044 |
atacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgcgttcaag |
35177945 |
T |
|
| Q |
197 |
gatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatg |
296 |
Q |
| |
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|||||| ||||||| ||||||||||||| |||||| | |||||||| |||||||||| || |||| | || ||||| ||||||||||| ||||||||| |
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| T |
35177944 |
gatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatg |
35177845 |
T |
|
| Q |
297 |
ccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgat |
385 |
Q |
| |
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| || ||||| |||||||||||||| ||||||||||||| |||||| | | || || ||||||||||||||||| |||||||||| |
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| T |
35177844 |
ctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgtagcaatttcttacaaactgttttccctgttttttatgat |
35177756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 97 - 340
Target Start/End: Complemental strand, 35169753 - 35169510
Alignment:
| Q |
97 |
atacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttcaag |
196 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||| || |||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||| |
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|
| T |
35169753 |
atacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaag |
35169654 |
T |
|
| Q |
197 |
gatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatg |
296 |
Q |
| |
|
|||||| ||||||| ||||||||||||| | ||||| |||||| || |||||||||| || |||| | |||||||||||||||||||| ||||||||| |
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|
| T |
35169653 |
gatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaattacaaattcacggatttctattgttgtcttctcagaaagatatg |
35169554 |
T |
|
| Q |
297 |
ccgattcaacgtggtgtttggaagagatggctactattgctgaa |
340 |
Q |
| |
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| || ||||| |||||||||||||| |||||||| |||| |||| |
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| T |
35169553 |
ctgagtcaacatggtgtttggaagaaatggctaccattgttgaa |
35169510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 334
Target Start/End: Original strand, 25484265 - 25484514
Alignment:
| Q |
85 |
ccaaagctgtagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatt |
184 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| |||||| ||||| || || | |||||| | ||||| || |||||||| || ||||| |||||| |
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|
| T |
25484265 |
ccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtatt |
25484364 |
T |
|
| Q |
185 |
tttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttct |
284 |
Q |
| |
|
|| ||||||||||||| | ||| ||||||||||| || ||||||| ||||||||||||||||||||| ||| | |||||||| ||||| |||| |
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|
| T |
25484365 |
ttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttct |
25484464 |
T |
|
| Q |
285 |
ctcaaaga-tatgccgattcaacgtggtgtttggaagagatggctactatt |
334 |
Q |
| |
|
| |||||| ||||| |||||| ||||||||||| || |||||| ||||| |
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|
| T |
25484465 |
c-caaagattatgcttcttcaacatggtgtttggatgaaatggctgctatt |
25484514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 25436562 - 25436405
Alignment:
| Q |
97 |
atacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttcaag |
196 |
Q |
| |
|
|||||||||||| || |||||||||||| |||| ||||| |||||||| ||||||| | |||||||| ||||| ||||||||| |||||||| |
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|
| T |
25436562 |
atacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttaccttcaag |
25436463 |
T |
|
| Q |
197 |
gatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattc |
254 |
Q |
| |
|
||||| | ||| | ||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
25436462 |
gatgacaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattc |
25436405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 341
Target Start/End: Original strand, 25636522 - 25636762
Alignment:
| Q |
101 |
gatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatg |
200 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| |||||||| |||||| | ||||| ||||||||||| | ||||| ||||||| |||||||||||| |
|
|
| T |
25636522 |
gatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgaccttcaaggatg |
25636621 |
T |
|
| Q |
201 |
atcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaaga-tatgccg |
299 |
Q |
| |
|
| || |||| ||||||| |||||| |||||| |||||| | || |||||| || ||| | ||||||| |||||||||| |||||| ||||| |
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| T |
25636622 |
acaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caaagattatgctt |
25636720 |
T |
|
| Q |
300 |
attcaacgtggtgtttggaagagatggctactattgctgaat |
341 |
Q |
| |
|
||||| ||||||||||| || |||||| |||||| ||||| |
|
|
| T |
25636721 |
catcaacatggtgtttggatgaaatggctgctattgatgaat |
25636762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 341
Target Start/End: Original strand, 25442323 - 25442570
Alignment:
| Q |
94 |
tagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtatttttgccttc |
193 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||| ||||| | |||||| | ||||| || | |||||| | ||||| |||||||| | |||| |
|
|
| T |
25442323 |
tagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtcttc |
25442422 |
T |
|
| Q |
194 |
aaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaaga- |
292 |
Q |
| |
|
|||||||| || |||| ||||||| |||||| |||||| |||||| | || |||||| || ||| | ||||||| |||||||||| |||||| |
|
|
| T |
25442423 |
aaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caaagat |
25442521 |
T |
|
| Q |
293 |
tatgccgattcaacgtggtgtttggaagagatggctactattgctgaat |
341 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||| |||||| ||||| |
|
|
| T |
25442522 |
tatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat |
25442570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 500440 - 500322
Alignment:
| Q |
84 |
tccaaagctgtagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttaatcatctttatgctcatctaaaaagaaagggtat |
183 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| |||||| | ||| ||||||||||||||| ||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
500440 |
tccaaagctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtat |
500341 |
T |
|
| Q |
184 |
ttttgccttcaaggatgat |
202 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
500340 |
tttcacctttaaggatgat |
500322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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