View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13290_low_3 (Length: 212)
Name: NF13290_low_3
Description: NF13290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13290_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 8339819 - 8339659
Alignment:
| Q |
35 |
tcgtttcgaagatccatagattatataagtgtccaccaaaataagattttgcttatgctcataattgttgagggaaagtataagcgcaaaatcgtaagat |
134 |
Q |
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| T |
8339819 |
tcgtttcgaagatccatagattatataagtgtccaccaaaataagattttgcttatgctcataattgttgagggaaagtataagcgcaaaatcgtaagat |
8339720 |
T |
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| Q |
135 |
ttaacaattcaaatctaga-nnnnnnnactaccaccgtaacacctatacctctgattaaag |
194 |
Q |
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| T |
8339719 |
ttaacaattcaaatctagattttttttactaccaccgtaacacctatacctctgattaaag |
8339659 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 19163079 - 19163146
Alignment:
| Q |
66 |
tccaccaaaataagattttgcttatgctcataattgttgagggaaagtataagcgcaaaatcgtaagatt |
135 |
Q |
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| T |
19163079 |
tccaccaaaataagattgtg--tattctcataatcgttgagggtaagtataatcgcaaaatcgtaggatt |
19163146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 13713273 - 13713223
Alignment:
| Q |
66 |
tccaccaaaataagattttgcttatgctcataattgttgagggaaagtata |
116 |
Q |
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| T |
13713273 |
tccaccaaaataagattttgcatatactcataattgttgaaggcaagtata |
13713223 |
T |
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