View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13291_high_4 (Length: 370)

Name: NF13291_high_4
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13291_high_4
NF13291_high_4
[»] chr3 (3 HSPs)
chr3 (18-365)||(249169-249502)
chr3 (207-354)||(19142271-19142418)
chr3 (207-284)||(38396758-38396835)
[»] chr2 (2 HSPs)
chr2 (200-348)||(5546317-5546465)
chr2 (207-240)||(25524908-25524941)
[»] chr6 (1 HSPs)
chr6 (207-288)||(5652927-5653008)
[»] chr4 (1 HSPs)
chr4 (186-288)||(45671438-45671540)
[»] chr7 (1 HSPs)
chr7 (186-288)||(5230008-5230110)
[»] chr5 (3 HSPs)
chr5 (200-354)||(20543502-20543656)
chr5 (218-255)||(13810992-13811029)
chr5 (218-255)||(13959677-13959714)
[»] chr8 (4 HSPs)
chr8 (186-267)||(12811923-12812004)
chr8 (207-284)||(34830906-34830983)
chr8 (209-342)||(36350223-36350356)
chr8 (208-277)||(27527480-27527549)
[»] chr1 (1 HSPs)
chr1 (206-269)||(46039606-46039669)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 249169 - 249502
Alignment:
Q  18 atatcaagggcactgtcctagttcacgggcccaaaatttcaatagatctacccaaaatgacgaacaattaatggtaacaattaatgtaatgtaatgtaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||             ||||||||||||||    
T  249169 atatcaagggcactgtcctagttcacgggcccaaaatttcaatagatctacccaagatgacgaacaattaatg-------------taatgtaatgtaat 249255  T
Q  118 gattaactaacaattgcataacagaatgaatgaatnnnnnnnnnnnngaacatacttgttgtttgaatattcataaagtctgccacggctggagaagaca 217  Q
    ||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249256 gattaactaacaattgcataacagaatgaat-aataaaaataaaaaagaacatacttgttgtttgaatattcataaagtctgccacggctggagaagaca 249354  T
Q  218 atgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtcacttgcctatttgttgtat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249355 atgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtcacttgcctatttgttgtat 249454  T
Q  318 tctcaatcctttttatctcaatctttcccctccccatcctatgcttct 365  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  249455 tctcaatcctttttatctcaatctttcccctccccatcttatgtttct 249502  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 354
Target Start/End: Original strand, 19142271 - 19142418
Alignment:
Q  207 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtcacttgcct 306  Q
    ||||||||||||  ||||||||||| |||||||| | ||| |||| |||||||||||||||||  | |||||| | ||  ||||||||||| ||||||||    
T  19142271 tggagaagacaacaagagcaacttcggcatcacaaagaacggataattcataagctttcttcaacaatccattgcgtcgtttgcaaaaagtgacttgcct 19142370  T
Q  307 atttgttgtattctcaatcctttttatctcaatctttcccctccccat 354  Q
    ||| || || || |||||||| || || ||||| ||||| || |||||    
T  19142371 attggtagtgttttcaatcctcttgatttcaatttttcctcttcccat 19142418  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 38396835 - 38396758
Alignment:
Q  207 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttc 284  Q
    |||||||||| ||||||||||| || |||||||| | ||| || |||||||||||||| |||| ||| ||||| ||||    
T  38396835 tggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttc 38396758  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 348
Target Start/End: Complemental strand, 5546465 - 5546317
Alignment:
Q  200 ccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtca 299  Q
    |||||||| |||||||| || ||||||||||| |||||||| | ||| |||| |||||| ||||||||||  |  ||||| ||||| ||||| ||||| |    
T  5546465 ccacggctagagaagactataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagtta 5546366  T
Q  300 cttgcctatttgttgtattctcaatcctttttatctcaatctttcccct 348  Q
    |||| | ||| || || || ||||||||||| |||||||||||||||||    
T  5546365 cttgacgattcgtcgtgttttcaatccttttgatctcaatctttcccct 5546317  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 25524941 - 25524908
Alignment:
Q  207 tggagaagacaatgagagcaacttcagcatcaca 240  Q
    ||||||||||||| ||||||||||||||||||||    
T  25524941 tggagaagacaataagagcaacttcagcatcaca 25524908  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 5653008 - 5652927
Alignment:
Q  207 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctctt 288  Q
    ||||||||| ||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||||||||||| ||||||||    
T  5653008 tggagaagataataagagcaacttcagcatcacaaagaacagataattcataagctttcttaagaagtccatttcttctctt 5652927  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 45671540 - 45671438
Alignment:
Q  186 attcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttct 285  Q
    ||||||| ||| |||||||| |||||||||  || |||||||||||||||||||| | |||||| ||||||||||| ||||| || |  ||||| |||||    
T  45671540 attcatatagtttgccacggttggagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttct 45671441  T
Q  286 ctt 288  Q
    |||    
T  45671440 ctt 45671438  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 5230110 - 5230008
Alignment:
Q  186 attcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttct 285  Q
    ||||||||||  | |||||  |||||||||  || |||||||| ||||||||||| | ||| || ||||||||||||||||| ||||| ||||| |||||    
T  5230110 attcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagaccatttcttct 5230011  T
Q  286 ctt 288  Q
    |||    
T  5230010 ctt 5230008  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 354
Target Start/End: Original strand, 20543502 - 20543656
Alignment:
Q  200 ccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtca 299  Q
    |||||||| ||||| | |||||||||||| ||||||||||| |  |  || ||||||||||| |||||||| | |||||| ||||||||   ||| || |    
T  20543502 ccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttcttcagcattccatttcttctctttgcaaatgtaa 20543601  T
Q  300 cttgcctatttgttgtattctcaatcctttttatctcaatctttcccctccccat 354  Q
    |||| | |||| || | ||||||||||| |||| ||| | ||||||||| |||||    
T  20543602 cttgacgatttattttgttctcaatcctctttagctctacctttcccctacccat 20543656  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 13810992 - 13811029
Alignment:
Q  218 atgagagcaacttcagcatcacacaaaactgatagttc 255  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  13810992 atgagagcaacatcagcatcacacaaaactgaaagttc 13811029  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 13959714 - 13959677
Alignment:
Q  218 atgagagcaacttcagcatcacacaaaactgatagttc 255  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  13959714 atgagagcaacatcagcatcacacaaaactgaaagttc 13959677  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 12811923 - 12812004
Alignment:
Q  186 attcataaagtctgccacggctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttctt 267  Q
    ||||||| ||| |||||||||| ||||| |  || || ||||||||||||||||| | ||| || |||||||||||||||||    
T  12811923 attcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttctt 12812004  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 34830906 - 34830983
Alignment:
Q  207 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttc 284  Q
    |||||||||  || |||||||||||||||||||| | ||| || |||||||||||||| |||| ||| || |||||||    
T  34830906 tggagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttttttcaaaagaccgttccttc 34830983  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 342
Target Start/End: Complemental strand, 36350356 - 36350223
Alignment:
Q  209 gagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttctcttgcaaaaagtcacttgcctat 308  Q
    |||||||| || |||||||||||||||||||| |  || |||| |||||| || ||||| || |  ||||| || | |||||| || || ||||| | ||    
T  36350356 gagaagactataagagcaacttcagcatcacaaagcacagataattcatatgccttcttaagcaagccatttctacgcttgcagaacgtaacttgacgat 36350257  T
Q  309 ttgttgtattctcaatcctttttatctcaatctt 342  Q
    | ||||| ||||||||||| || |||||||||||    
T  36350256 tcgttgtgttctcaatcctcttgatctcaatctt 36350223  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 27527480 - 27527549
Alignment:
Q  208 ggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtcca 277  Q
    |||||||||||| | |||||||||||||||||| | ||| || |  |||| ||||||||| |||||||||    
T  27527480 ggagaagacaatcaaagcaacttcagcatcacaaagaacagagatctcatgagctttcttgagaagtcca 27527549  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 46039606 - 46039669
Alignment:
Q  206 ctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttca 269  Q
    ||||||||||  || |||||||||||||||||||| || || || |||||| ||||||||||||    
T  46039606 ctggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttca 46039669  T

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