View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13291_high_8 (Length: 207)
Name: NF13291_high_8
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13291_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 31828180 - 31828337
Alignment:
| Q |
33 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctctgctttttcaactttaacccttcttgaagcaaccaa |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31828180 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctctactttttcaactttaacccttcttgaagcaaccaa |
31828279 |
T |
|
| Q |
133 |
cttcattgtttcaacacaaaaaactatattagattgaagaaacaaaatctatatgaag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31828280 |
cttcattgtttcaacacaaaaaactatattagattgaagaaacaaaatctatatgaag |
31828337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University