View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13291_low_1 (Length: 583)
Name: NF13291_low_1
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13291_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 3 - 564
Target Start/End: Complemental strand, 7279836 - 7279270
Alignment:
| Q |
3 |
aggaggagcagagagttgacctcagtggtccagaaaagatttaagtttcctgagaacagtgttgaactttatgctgagaaggtgaacaataggggacttt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7279836 |
aggaggatcagagagttgacctcagtggtccagaaaagatttaagtttcctgagaacagtgttgaactttatgctgagaaggtgaacaataggggacttt |
7279737 |
T |
|
| Q |
103 |
gtgccattgcacaagctgaatcccttcgctacaagctacttggcggtcttgctgttcgcagagcctgctatggtgtgttgaggtttgttatggaaagtgg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7279736 |
gtgccattgcacaagctgaatcccttcgctacaaggtacttggcggtcttgctgttcgcagagcctgctatggtgtgttgaggtttgttatggaaagtgg |
7279637 |
T |
|
| Q |
203 |
tgccaagggctgtgaggttattgttagtggaaaattgagagcacaaagagccaagtccatgaagttcaaggacggctatatgatttcatctggccagcct |
302 |
Q |
| |
|
||| ||||| |||||||||||||| |||||||||||||| || || ||||| || || |||||||||||||| || |||||||| ||||| || |||||| |
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|
| T |
7279636 |
tgctaagggatgtgaggttattgtcagtggaaaattgagggcccagagagctaaatctatgaagttcaaggatgggtatatgatctcatccggacagcct |
7279537 |
T |
|
| Q |
303 |
gttaaggattacattgactctgctgttagacatgttctacttagacaggttagttaatttatcatctaacaacct-----tgttggtttggtttgttatg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7279536 |
gttaaggattacattgactctgctgttagacatgttctacttagacaggttagttagtttatcatctaacaaccttgttttgttggtttggtttgttata |
7279437 |
T |
|
| Q |
398 |
gatttatttatgttgctaatgatgattatgatgtttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7279436 |
gatttatttatgttgctaatgatgattatgatgtttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagc |
7279337 |
T |
|
| Q |
498 |
agggtcctaaaactcccctacctgatattgtcactattcacactccaaaggaggaggaagagtacat |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7279336 |
agggtcctaaaactcccctacctgatattgtcactattcacactccaaaggaggaggaagagtacat |
7279270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 430 - 564
Target Start/End: Original strand, 16865777 - 16865911
Alignment:
| Q |
430 |
gtttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagcagggtcctaaaactcccctacctgatattgtc |
529 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
16865777 |
gtttgtgttgtagggtgttctcggcattaaggtgaagatcatgctcgactgggatcctaaaggaaagcagggccctaaaactcccctccctgatattgtc |
16865876 |
T |
|
| Q |
530 |
actattcacactccaaaggaggaggaagagtacat |
564 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
16865877 |
accattcacactccaaaggaagaggaggagtacat |
16865911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 16864142 - 16864302
Alignment:
| Q |
3 |
aggaggagcagagagttgacctcagtggtccagaaaagatttaagtttcctgagaacagtgttgaactttatgctgagaaggtgaacaataggggacttt |
102 |
Q |
| |
|
||||||| |||||| |||||||||| || ||||| || || ||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
16864142 |
aggaggattagagagctgacctcagttgtgcagaagaggttcaagtttcctgaaaacagtgttgagctttacgctgagaaggtcaacaacaggggacttt |
16864241 |
T |
|
| Q |
103 |
gtgccattgcacaagctgaatcccttcgctacaagctacttggcggtcttgctgttcgcag |
163 |
Q |
| |
|
|||||||||| || ||||| || || ||||||||||| || |||||||||||||||||||| |
|
|
| T |
16864242 |
gtgccattgctcaggctgagtctctccgctacaagcttctcggcggtcttgctgttcgcag |
16864302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 217 - 386
Target Start/End: Original strand, 16865538 - 16865703
Alignment:
| Q |
217 |
aggttattgttagtggaaaattgagagcacaaagagccaagtccatgaagttcaaggacggctatatgatttcatctggccagcctgttaaggattacat |
316 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||| |||||||||||||| ||||| || |||||||| ||||| || || || ||||| ||||| |
|
|
| T |
16865538 |
aggttattgtcagtggaaaattgagggcccaaagagccaaatccatgaagttcaaagacggttacatgatttcttctggacaaccagtcaaggactacat |
16865637 |
T |
|
| Q |
317 |
tgactctgctgttagacatgttctacttagacaggttagttaatttatcatctaacaaccttgttggttt |
386 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
16865638 |
tgactctgctgtgagacatgttctccttagacaggttag----cttatcatctaagaaccttattggttt |
16865703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 437 - 555
Target Start/End: Complemental strand, 50355912 - 50355794
Alignment:
| Q |
437 |
ttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagcagggtcctaaaactcccctacctgatattgtcactattc |
536 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
50355912 |
ttgtagggtgttcttggtatcaaagtgaagatcatgcttgattgggatcctaaagggaaacaaggtcctaaaactcccctccctgatattgtcactatcc |
50355813 |
T |
|
| Q |
537 |
acactccaaaggaggagga |
555 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
50355812 |
acactccaaaggaggagga |
50355794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 50357387 - 50357266
Alignment:
| Q |
42 |
tttaagtttcctgagaacagtgttgaactttatgctgagaaggtgaacaataggggactttgtgccattgcacaagctgaatcccttcgctacaagctac |
141 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||| | |||||| ||||||||||| ||| ||||||||||| ||||| |||||||| | |
|
|
| T |
50357387 |
tttaactttcctgagaacagtgtccaactttatgctgaaaaggtcagcaatagaggactttgtgctgctgctcaagctgaatctcttcgttacaagctcc |
50357288 |
T |
|
| Q |
142 |
ttggcggtcttgctgttcgcag |
163 |
Q |
| |
|
|||| |||||||| || ||||| |
|
|
| T |
50357287 |
ttggtggtcttgccgtccgcag |
50357266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 50356344 - 50356281
Alignment:
| Q |
158 |
tcgcagagcctgctatggtgtgttgaggtttgttatggaaagtggtgccaagggctgtgaggtt |
221 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50356344 |
tcgcagggcctgctatggtgttttgaggtttgttatggaaagtggtgccaagggatgtgaggtt |
50356281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 16865396 - 16865453
Alignment:
| Q |
165 |
gcctgctatggtgtgttgaggtttgttatggaaagtggtgccaagggctgtgaggtta |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
16865396 |
gcctgctatggtgtgttgaggtttgtcatggaaagtggtgccaagggttgtgaggtta |
16865453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 353
Target Start/End: Complemental strand, 50356189 - 50356053
Alignment:
| Q |
217 |
aggttattgttagtggaaaattgagagcacaaagagccaagtccatgaagttcaaggacggctatatgatttcatctggccagcctgttaaggattacat |
316 |
Q |
| |
|
|||| ||||| |||||||||||||| || |||||||| || || |||||||||||| | || | ||| |||| ||||| ||||| || || |||||||| |
|
|
| T |
50356189 |
aggtcattgtcagtggaaaattgagggctcaaagagctaaatcaatgaagttcaagcatggagacatgctttcttctgggcagccagtgaaagattacat |
50356090 |
T |
|
| Q |
317 |
tgactctgctgttagacatgttctacttagacaggtt |
353 |
Q |
| |
|
||| ||||| ||||||||||| || || ||||||||| |
|
|
| T |
50356089 |
tgattctgcagttagacatgtgctcctcagacaggtt |
50356053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 563
Target Start/End: Complemental strand, 18174639 - 18174075
Alignment:
| Q |
3 |
aggaggagcagagagttgacctcagtggtccagaaaagatttaagtttcctgagaacagtgttgaactttatgctgagaaggtgaacaataggggacttt |
102 |
Q |
| |
|
||||||| ||||||| | |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| | |
|
|
| T |
18174639 |
aggaggatcagagagcttacctcagtagtccagaaaaggtttaagttccctgagaacagtgttgagctttatgctgagaaagttaacaacaggggactct |
18174540 |
T |
|
| Q |
103 |
gtgccattgcacaagctgaatcccttcgctacaagctacttggcggtcttgctgttcgcagagcctgctatggtgtgttgaggtttgttatggaaagtgg |
202 |
Q |
| |
|
|||||||||| || || ||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18174539 |
gtgccattgcccaggccgaatctcttcgttacaagcttctcggcggtcttgctgttcgcagagcctgctatggtgtcttgaggtttgttatggaaagtgg |
18174440 |
T |
|
| Q |
203 |
tgccaagggctgtgaggttattgttagtggaaaattgagagcacaaagagccaagtccatgaagttcaaggacggctatatgatttcatctggccagcct |
302 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||||||||| ||| | |||||||||||||||||| || ||| |
|
|
| T |
18174439 |
tgctaagggttgtgaggttattgtcagtggaaaattaagggcccagagagctaagtccatgaagtttaagcaaaactatatgatttcatctggacaacct |
18174340 |
T |
|
| Q |
303 |
gttaaggattacattgactctgctgttagacatgttctacttagacaggttagttaatttatcatctaacaaccttgttggtttggtttgttatggattt |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
18174339 |
gttaaggattacgttgactctgctgttagacatgttcttcttagacaggttagttagtttatcatctaaaaaccttattggtttggtttgttatgtattt |
18174240 |
T |
|
| Q |
403 |
atttatgttgctaatgatga----ttatgatgtttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagca |
498 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18174239 |
atttatgttgctaatgatgactatatatgacatttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagca |
18174140 |
T |
|
| Q |
499 |
gggtcctaaaactcccctacctgatattgtcactattcacactccaaaggaggaggaagagtaca |
563 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
18174139 |
aggtcctaaaactcctctacctgatattgttacaattcacactccaaaggatgaggaagagtaca |
18174075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 3 - 563
Target Start/End: Original strand, 18225162 - 18225726
Alignment:
| Q |
3 |
aggaggagcagagagttgacctcagtggtccagaaaagatttaagtttcctgagaacagtgttgaactttatgctgagaaggtgaacaataggggacttt |
102 |
Q |
| |
|
||||||| ||||||| | |||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||| | |
|
|
| T |
18225162 |
aggaggatcagagagcttacctcagtagtccagaaaaggtttaagttccctgagaacagtgttgagctttatgctgagaaagttaacaacaggggactct |
18225261 |
T |
|
| Q |
103 |
gtgccattgcacaagctgaatcccttcgctacaagctacttggcggtcttgctgttcgcagagcctgctatggtgtgttgaggtttgttatggaaagtgg |
202 |
Q |
| |
|
|||||||||| || || ||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18225262 |
gtgccattgcccaggccgaatctcttcgttacaagcttctcggcggtcttgctgttcgcagagcctgctatggtgtcttgaggtttgttatggaaagtgg |
18225361 |
T |
|
| Q |
203 |
tgccaagggctgtgaggttattgttagtggaaaattgagagcacaaagagccaagtccatgaagttcaaggacggctatatgatttcatctggccagcct |
302 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||||||||| ||| | |||||||||||||||||| || ||| |
|
|
| T |
18225362 |
tgctaagggttgtgaggttattgtcagtggaaaattaagggcccagagagctaagtccatgaagtttaagcaaaactatatgatttcatctggacaacct |
18225461 |
T |
|
| Q |
303 |
gttaaggattacattgactctgctgttagacatgttctacttagacaggttagttaatttatcatctaacaaccttgttggtttggtttgttatggattt |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
18225462 |
gttaaggattacgttgactctgctgttagacatgttcttcttagacaggttagttagtttatcatctaaaaaccttattggtttggtttgttatgtattt |
18225561 |
T |
|
| Q |
403 |
atttatgttgctaatgatga----ttatgatgtttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagca |
498 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18225562 |
atttatgttgctaatgatgactatatatgacatttatgttgtagggtgttcttggaattaaggtgaagattatgcttgactgggatcctaaaggaaagca |
18225661 |
T |
|
| Q |
499 |
gggtcctaaaactcccctacctgatattgtcactattcacactccaaaggaggaggaagagtaca |
563 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
18225662 |
aggtcctaaaactcctctacctgatattgttacaattcacactccaaaggatgaggaagagtaca |
18225726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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