View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13291_low_2 (Length: 424)
Name: NF13291_low_2
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13291_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 4845582 - 4845897
Alignment:
| Q |
9 |
gaagaatatgtttgtgccgcgacattgttatactacattatcaaaacctggcttatagatagtgatttcgtcgatgatagctatttcaatggatggacac |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
4845582 |
gaagaaaatgtttgtgccgcgacattgttatactacattatcaaaacctggcttatagatagtgatttcgtcgatgacggctatttcaatggatggatac |
4845681 |
T |
|
| Q |
109 |
tttaatgcaatgaccgccaatgttggccctcgacatatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgttt |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845682 |
tttaatgcaatgacagccaatgttggccctcgacatatctagcaccaatgcagcaaatactcaccatttttccttttctaacctatcgacgatgttgttc |
4845781 |
T |
|
| Q |
209 |
aaatgtatcagtagtgattacaattattgtgaagaatcaaaatcaaatgcagtcaatgccgcctcaatcgcgacaacattgtagtttcaacaacaacaac |
308 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4845782 |
aaatgtattagtagtgattataattattgtgaagaatcaaaatcaaatgcagccaatgccgcatcaatcatgacaacattgtagtttcaacaacaacaac |
4845881 |
T |
|
| Q |
309 |
aaaaaccattatatca |
324 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
4845882 |
aaaaaccattacatca |
4845897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 299 - 406
Target Start/End: Original strand, 4846338 - 4846445
Alignment:
| Q |
299 |
caacaacaacaaaaaccattatatcacagcttggattgaagtctcgggcctttatttaaaacccttcaatagtgtgctcatcttcttctagaatcacaaa |
398 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4846338 |
caacagcaacaaaaaccattatatcacggcttggatcgcagtcacgggcctttatttaaaacccttcaataatttgctcatcttcttctagaatcacaaa |
4846437 |
T |
|
| Q |
399 |
acaattac |
406 |
Q |
| |
|
|||||||| |
|
|
| T |
4846438 |
acaattac |
4846445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 4797849 - 4797775
Alignment:
| Q |
144 |
tatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgtttaaatgtatca |
218 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||||||||||| |||||||||| || || |||| |||||||||| |
|
|
| T |
4797849 |
tatccagcaccaatgcagcaaatcttcacaatttttcctttcctaacctatccacagtggtgttcaaatgtatca |
4797775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 4834872 - 4834920
Alignment:
| Q |
358 |
aacccttcaatagtgtgctcatcttcttctagaatcacaaaacaattac |
406 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
4834872 |
aacccttcaatagtttgttcatcttcatctagaatcacaaaacaattac |
4834920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 4835948 - 4836006
Alignment:
| Q |
347 |
cctttatttaaaacccttcaatagtgtgctcatcttcttctagaatcacaaaacaatta |
405 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
4835948 |
cctttatttaaaacccctcaattattcgctcattttcttctagaatcacaaaacaatta |
4836006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 4804147 - 4804238
Alignment:
| Q |
141 |
acatatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgtttaaatgtatcagtagtgattacaattat |
235 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||| || |||| |||||||||| || || |||| |||||||| |||||| ||||||||| |
|
|
| T |
4804147 |
acatatctagtatcaatgcagcaaatcttcaccattctttctttcctaacctatccacactggtgttcaaatgtat---tagtgaatacaattat |
4804238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 4815125 - 4815195
Alignment:
| Q |
151 |
caccaatgcagcaaatattcaccatttttccttttctaacctatcgacgatgttgtttaaatgtatcagta |
221 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| |||||||||| || || |||| || |||||||||| |
|
|
| T |
4815125 |
caccgatgcagcaaatcttcaccatttttccttgcctaacctatccacagtggtgttgaagtgtatcagta |
4815195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 4824630 - 4824684
Alignment:
| Q |
141 |
acatatctagcaccaatgcagcaaatattcaccatttttccttttctaacctatc |
195 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
4824630 |
acatatccagcactaatgcaacaaatcttcaccgttttttcttttctaacctatc |
4824684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 4807635 - 4807675
Alignment:
| Q |
94 |
tcaatggatggacactttaatgcaatgaccgccaatgttgg |
134 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
4807635 |
tcaatggatggacaattaaatgcaatgaccgccattgttgg |
4807675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 3665191 - 3665277
Alignment:
| Q |
93 |
ttcaatggatggacactttaatgcaatgaccgccaatgttggccctc-gacatatctagcaccaatgcagcaaatattcaccatttt |
178 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||| |||||| || | |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3665191 |
ttcaatggatggacacttaagtgcaatgactgccattgttggaccaccgacatatccggcaccaatgcagcaaatcttcaccatttt |
3665277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University