View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13291_low_3 (Length: 399)
Name: NF13291_low_3
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13291_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 46864004 - 46864346
Alignment:
| Q |
18 |
tattggttcttcaaaatcatttggggatgacattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcat |
117 |
Q |
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| T |
46864004 |
tattggttcttcaaaatcatttggggatggcattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcat |
46864103 |
T |
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| Q |
118 |
caagggagctgtccctttggggaggactgtcacttttctcatggagaagcaggtgataataactcatctttgtgttgatttccctattcccatttttgat |
217 |
Q |
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| T |
46864104 |
caagggagctgtccctttggggaggactgtcacttttctcatggagaagcaggtaataataactcatctttgtgttgatttcccttttcccttttttgat |
46864203 |
T |
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| Q |
218 |
tattggtcttggttttatcaaacataattctgttttactgttttttgttttgttcaatcatagaaaatatgttttctgattttcttgttatatgatgtac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46864204 |
tattggtcttggttttatcaaacataattctgttttactgttttttgttttgttcaatcatagaaaatatgttttctgattttcttgttatatgatgtac |
46864303 |
T |
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| Q |
318 |
aaattatagtggttggatgtatgttattttcattgctgcgtat |
360 |
Q |
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| T |
46864304 |
aaattatagtggttgaatgtatgttattttcattgctgcgtat |
46864346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 46899168 - 46899351
Alignment:
| Q |
48 |
cattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcatcaagggagctgtccctttggggaggactgt |
147 |
Q |
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| T |
46899168 |
cattagggctgtgaacaagccagcaaggagtgcttattggaagactaagctgtgt---caatggcagcatacagggagctgtccctttggggagacctgt |
46899264 |
T |
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| Q |
148 |
cacttttctcatggagaagcaggtgataataactcatctttgtgttgatttccctattcccatttttgattattggtcttggtttta |
234 |
Q |
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| T |
46899265 |
gactttgctcatggagaagcaggtaatgttaactcatctgtttgttaatttccattctccctattttgattaatggttttgatttta |
46899351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 22691790 - 22691750
Alignment:
| Q |
51 |
tagggctgtgaacaagccagctaggggcacttattggaaga |
91 |
Q |
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| T |
22691790 |
taggtctgtgaacaagccagcaaggggcacttactggaaga |
22691750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 19845997 - 19846037
Alignment:
| Q |
51 |
tagggctgtgaacaagccagctaggggcacttattggaaga |
91 |
Q |
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| T |
19845997 |
taggtctgtgaacaagccagcaaggggcacttactggaaga |
19846037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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