View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13291_low_5 (Length: 245)
Name: NF13291_low_5
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13291_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 32558796 - 32559021
Alignment:
| Q |
1 |
atgtaaagtaaataagtattggcctccatggcttactcatctgagcatttaaaataaacaaaattgattccttaaacataatccaaccacttattcatca |
100 |
Q |
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| T |
32558796 |
atgtaaagtaaataagtattggcctccatggcttactcatctgagcatttaaaataaacaaaattgattccttaaacataatccaaccacttattcatca |
32558895 |
T |
|
| Q |
101 |
tcaccatcatcatgctcattctcttcactactagtcctcattagtgatacatctttctccttttgtatgcctataaggacaagttggttcccctccccat |
200 |
Q |
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| T |
32558896 |
tcaccatcatcatgctcattctcttcactactagtcctcactagtgataca-atttctccttttgtatgcctataaggacaagttggttcccctccccat |
32558994 |
T |
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| Q |
201 |
tctattctgctgtctacataggcacat |
227 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
32558995 |
tcttttctgctgtctacataggcacat |
32559021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 37576230 - 37576157
Alignment:
| Q |
88 |
cacttattcatcatcaccatcatcatgctcattctcttcactactagtcctcattagtgatacatctttctcctttt |
164 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||| | ||||| || || ||||||||||||||| |
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| T |
37576230 |
cacttattcatcat---catcatcatgctcactctcttcactactagacatcatttgttatgcatctttctcctttt |
37576157 |
T |
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