View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13291_low_7 (Length: 238)

Name: NF13291_low_7
Description: NF13291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13291_low_7
NF13291_low_7
[»] chr5 (13 HSPs)
chr5 (18-230)||(17928239-17928451)
chr5 (68-230)||(16397316-16397478)
chr5 (70-230)||(16403908-16404068)
chr5 (69-230)||(15083594-15083755)
chr5 (69-230)||(15357918-15358079)
chr5 (69-223)||(15331831-15331986)
chr5 (69-229)||(15347650-15347810)
chr5 (122-229)||(15336277-15336384)
chr5 (73-223)||(15452741-15452891)
chr5 (81-230)||(15428907-15429056)
chr5 (124-223)||(16414648-16414747)
chr5 (126-158)||(30520888-30520920)
chr5 (126-158)||(30561228-30561260)
[»] chr3 (1 HSPs)
chr3 (75-208)||(8187771-8187904)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 17928451 - 17928239
Alignment:
Q  18 aagagaatgacaaaagctatcataggatcaacttctggaaattcctatgactgtgaggatttagatctagagcccctacaaagaagactgcaagagctac 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17928451 aagagaatgacaaaagttatcataggatcaacttctggaaattcctatgactgtgaggatttagatctagagcccctacaaagaagactgcaagagctac 17928352  T
Q  118 ttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagagaattggctgaagttgaagtctgtattggcttgtggaggaaaagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17928351 ttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagagaattggctgaagttgaagtctgtattggcttgtggaggaaaagg 17928252  T
Q  218 tgcttcgattttg 230  Q
    |||||||||||||    
T  17928251 tgcttcgattttg 17928239  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 16397478 - 16397316
Alignment:
Q  68 ctgtgaggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaa 167  Q
    |||||||||||||||||||||||  || ||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||  ||||| ||||  ||    
T  16397478 ctgtgaggatttagatctagagctacttcaaagaaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaatgacaaa 16397379  T
Q  168 caagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttcgattttg 230  Q
    |||||||||||||  |  ||||| |||||||||||||||||||||||||| ||||| ||||||    
T  16397378 caagagaattggcaaagattgaaatctgtattggcttgtggaggaaaaggcgcttcaattttg 16397316  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 16404068 - 16403908
Alignment:
Q  70 gtgaggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaaca 169  Q
    |||||||||| ||||||||||  ||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||| |  |  ||||    
T  16404068 gtgaggatttggatctagagctactacaaaaaagacttcaagttctacttcgaagaaaaagatatttgcttgttttggatgacttgtggaaccaaaaaca 16403969  T
Q  170 agagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttcgattttg 230  Q
    |||| |||||||||  ||||| | | ||||||||||||| ||||| ||| |||| ||||||    
T  16403968 agagtattggctgagattgaaatttctattggcttgtggtggaaagggtacttcaattttg 16403908  T

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Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 15083755 - 15083594
Alignment:
Q  69 tgtgaggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaac 168  Q
    ||||| ||||| |||||||| || |||||||||||||| ||| | ||||| | | ||||||||| ||||||||| ||||||||  | ||||| ||  |||    
T  15083755 tgtgaagatttggatctagaaccactacaaagaagacttcaacatctactacaaggaaaaagatttttgcttgtattggatgacgtttgggacgataaac 15083656  T
Q  169 aagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttcgattttg 230  Q
    |||||||||||| ||  ||||  ||||||||||||||||||||||| |||||||| ||||||    
T  15083655 aagagaattggcagagattgagatctgtattggcttgtggaggaaagggtgcttcaattttg 15083594  T

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Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 15358079 - 15357918
Alignment:
Q  69 tgtgaggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaac 168  Q
    |||||||||||||||||||||||  | ||||||| ||||   ||  | || |||||||||||||||||||| || ||||||||| | |||||||| | ||    
T  15358079 tgtgaggatttagatctagagccgttgcaaagaaaactgttggatttgctacgaagaaaaagatatttgctggtgttggatgatgtatgggatgatggac 15357980  T
Q  169 aagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttcgattttg 230  Q
    |||||||||||| ||  ||||| |||||||||||||| ||||| || ||||||||| |||||    
T  15357979 aagagaattggcagagattgaaatctgtattggcttgcggaggcaagggtgcttcggttttg 15357918  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 15331986 - 15331831
Alignment:
Q  69 tgtgaggatttagatctagagcccctacaaagaagactgcaa-gagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaa 167  Q
    ||||| ||||| ||||| ||||| |||||||||| ||| ||| || ||| | | |||||||| ||||||||||||||| |||||| ||||| ||||  ||    
T  15331986 tgtgatgatttggatcttgagccactacaaagaaaacttcaaagatctattgcaaagaaaaaaatatttgcttgttttagatgatgtgtggaatgaaaaa 15331887  T
Q  168 caagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttc 223  Q
    |||||||| ||||  |||||||| ||| | ||||||||||||||||| ||||||||    
T  15331886 caagagaaatggcacaagttgaaatctttgttggcttgtggaggaaagggtgcttc 15331831  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 15347810 - 15347650
Alignment:
Q  69 tgtgaggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaac 168  Q
    |||||||||||||| |||||||| || ||||||| |||   | |  | || | |||||||||||||||||| || ||||||||| ||||||| || || |    
T  15347810 tgtgaggatttagagctagagccgctgcaaagaaaacttttaaatttgctgcaaagaaaaagatatttgctggtgttggatgatgtgtgggacgacgacc 15347711  T
Q  169 aagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttcgatttt 229  Q
    |||||||||||| ||  ||||  | |||||||||||||||||| || ||||||||||||||    
T  15347710 aagagaattggcagagattgagatttgtattggcttgtggaggcaagggtgcttcgatttt 15347650  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 15336384 - 15336277
Alignment:
Q  122 aagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgct 221  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||  ||  |||||||||||  |  ||||  |||||||||||||||||||| || ||||||    
T  15336384 aagaaaaagatatttgcttgtgttggatgatgtgtgggacgacaaatcagagaattggcaaagattgagatctgtattggcttgtggaggcaagggtgct 15336285  T
Q  222 tcgatttt 229  Q
    ||||||||    
T  15336284 tcgatttt 15336277  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 15452741 - 15452891
Alignment:
Q  73 aggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaaga 172  Q
    ||||||| ||||||||| | ||||||| || ||| ||| || ||||||| | |||||||||||||||  ||||||||||| ||||| ||||  |||||||    
T  15452741 aggatttggatctagagacactacaaataaaacttcaaaaggtacttcgtacaaaaagatatttgctaattttggatgatgtgtggaatgataaacaaga 15452840  T
Q  173 gaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttc 223  Q
    ||| |||    | ||||| ||| |||||| |||||||||||| ||| ||||    
T  15452841 gaaatggtatgatttgaaatctctattggtttgtggaggaaagggttcttc 15452891  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 15428907 - 15429056
Alignment:
Q  81 gatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagagaattggc 180  Q
    ||||||||| | ||||||| |||||| ||||| || |||| | ||||||||| ||||||||| ||||| ||| | ||||| |   |||||||||||||||    
T  15428907 gatctagagacactacaaacaagacttcaagacctgcttcaaggaaaaagatttttgcttgtattggacgatgtatgggacgttaaacaagagaattggc 15429006  T
Q  181 tgaagttgaagtctgtattggcttgtggaggaaaaggtgcttcgattttg 230  Q
      || ||||  ||||| ||||||||| ||||||| ||| |||| ||||||    
T  15429007 aaaaattgagatctgttttggcttgtagaggaaagggttcttcaattttg 15429056  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 16414747 - 16414648
Alignment:
Q  124 gaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagagaattggctgaagttgaagtctgtattggcttgtggaggaaaaggtgcttc 223  Q
    ||||||| |||||||| ||  |||||||| | |||||||| ||||||||||| |||| || ||| || | |||||||||||||||||| || ||||||||    
T  16414747 gaaaaaggtatttgctagtgctggatgatgtatgggatgatgaacaagagaactggcagaggttaaaatatgtattggcttgtggaggcaagggtgcttc 16414648  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 30520888 - 30520920
Alignment:
Q  126 aaaagatatttgcttgttttggatgatttgtgg 158  Q
    ||||||||||||||||||||||||||| |||||    
T  30520888 aaaagatatttgcttgttttggatgatgtgtgg 30520920  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 30561228 - 30561260
Alignment:
Q  126 aaaagatatttgcttgttttggatgatttgtgg 158  Q
    ||||||||||||||||||||||||||| |||||    
T  30561228 aaaagatatttgcttgttttggatgatgtgtgg 30561260  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 8187904 - 8187771
Alignment:
Q  75 gatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaacaagaga 174  Q
    |||||||| || ||||| ||||||||||||||   |||  || | | |||||||||||||||||| |||||||| ||| |||||||||| |||||||  |    
T  8187904 gatttagaacttgagccactacaaagaagacttgtagaaatattacaaagaaaaagatatttgctcgttttggacgatgtgtgggatgatgaacaaggaa 8187805  T
Q  175 attggctgaagttgaagtctgtattggcttgtgg 208  Q
    | |||| || |||||| |||||||||||||||||    
T  8187804 actggcagaggttgaaatctgtattggcttgtgg 8187771  T

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