View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13292_high_17 (Length: 321)

Name: NF13292_high_17
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13292_high_17
NF13292_high_17
[»] chr8 (3 HSPs)
chr8 (103-302)||(12933883-12934082)
chr8 (18-109)||(9443697-9443788)
chr8 (19-97)||(24598099-24598177)
[»] chr4 (6 HSPs)
chr4 (102-302)||(28608523-28608723)
chr4 (103-302)||(14177153-14177352)
chr4 (18-109)||(42266524-42266615)
chr4 (18-109)||(48701426-48701517)
chr4 (15-109)||(30949788-30949882)
chr4 (19-95)||(1999536-1999612)
[»] chr7 (4 HSPs)
chr7 (103-302)||(15299669-15299868)
chr7 (19-109)||(8138063-8138153)
chr7 (15-109)||(25441379-25441477)
chr7 (138-193)||(6692200-6692255)
[»] chr5 (4 HSPs)
chr5 (15-109)||(34352631-34352725)
chr5 (18-109)||(41719031-41719122)
chr5 (19-97)||(23318914-23318992)
chr5 (138-193)||(19944150-19944205)
[»] chr6 (5 HSPs)
chr6 (18-109)||(27878314-27878405)
chr6 (18-109)||(30968030-30968121)
chr6 (19-95)||(8480425-8480501)
chr6 (138-193)||(796566-796621)
chr6 (138-193)||(8273206-8273261)
[»] chr3 (5 HSPs)
chr3 (18-109)||(5822880-5822971)
chr3 (15-109)||(2816868-2816962)
chr3 (19-97)||(42585579-42585657)
chr3 (19-96)||(25877455-25877532)
chr3 (15-73)||(47277428-47277486)
[»] chr2 (2 HSPs)
chr2 (18-109)||(826100-826191)
chr2 (15-107)||(13843405-13843497)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 12933883 - 12934082
Alignment:
Q  103 agaagactcgaaaggagcacctggtttgcaaattgaagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttgactcgttcat 202  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12933883 agaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcat 12933982  T
Q  203 gatgagtcaggaatatgccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatccttctgttatatgtagatgat 302  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12933983 gatgagtcatgaatataccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatccttctgttatatgtagatgat 12934082  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 9443788 - 9443697
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443788 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 9443697  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 24598177 - 24598099
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgc 97  Q
    |||||||||||||||||||||| || || ||||||||||||||| |||||||||| || ||||||||||||||||||||    
T  24598177 aaaagtggaaagagatggatgacaacgctgttgccaatttgcacttagcaatggcagattcggtattgtcaagtattgc 24598099  T

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Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 102 - 302
Target Start/End: Complemental strand, 28608723 - 28608523
Alignment:
Q  102 aagaagactcgaaaggagcacctggtttgcaaattgaagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttgactcgttca 201  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28608723 aagaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttca 28608624  T
Q  202 tgatgagtcaggaatatgccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatccttctgttatatgtagatga 301  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28608623 tgatgagtcatgaatataccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatcattctgttatatgtagatga 28608524  T
Q  302 t 302  Q
    |    
T  28608523 t 28608523  T

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Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 14177153 - 14177352
Alignment:
Q  103 agaagactcgaaaggagcacctggtttgcaaattgaagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttgactcgttcat 202  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  14177153 agaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaattcgactcgttcat 14177252  T
Q  203 gatgagtcaggaatatgccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatccttctgttatatgtagatgat 302  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177253 gatgagtcatgaatataccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatccttctgttatatgtagatgat 14177352  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 42266524 - 42266615
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266524 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 42266615  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 48701517 - 48701426
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701517 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 48701426  T

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Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 30949882 - 30949788
Alignment:
Q  15 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30949882 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaaaaagac 30949788  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 1999536 - 1999612
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtatt 95  Q
    |||||||||||||||||||||| || || ||| ||||||||||| ||||||||||  | ||||||||||||||||||    
T  1999536 aaaagtggaaagagatggatgacaacgctgttaccaatttgcacttagcaatggcaaattcggtattgtcaagtatt 1999612  T

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Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 15299669 - 15299868
Alignment:
Q  103 agaagactcgaaaggagcacctggtttgcaaattgaagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttgactcgttcat 202  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  15299669 agaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggattaagacaagcaccaagacaatggtataagaaattttactcgttcat 15299768  T
Q  203 gatgagtcaggaatatgccaagacagatgcagatcattgtgtatatgtcaaaacatttcgaggtaacaaattcatcatccttctgttatatgtagatgat 302  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  15299769 gatgagtcatgaatataccaagacagatgcagatcattgtgtatatgtcaaaatatttcgaggtaacaaatttatcatccttctgttatatgtagatgat 15299868  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 8138153 - 8138063
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||| ||||||| |||||||  ||||||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  8138153 aaaagtggaaaaagatggaagataatgttgttgccaacctgcacctagcaatggcagactgggtattgtcaagtattgctgaaaagaagac 8138063  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 25441379 - 25441477
Alignment:
Q  15 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctag----caatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||| | |    ||||| ||||||| |||||||||||||||||||||||||||||    
T  25441379 gacggaaagtggaaagagatggatgataatgtcgtcgccaatttgcacatcgacgccaatgacggactcagtattgtcaagtattgctgaaaagaagac 25441477  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 6692200 - 6692255
Alignment:
Q  138 aagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttga 193  Q
    |||||||||||||||||  |||||||||| || ||||||||||||| ||| |||||    
T  6692200 aagaagagcttgtatggcctaaaacaagctccaagacaatggtatatgaagtttga 6692255  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 34352631 - 34352725
Alignment:
Q  15 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352631 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 34352725  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 41719031 - 41719122
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41719031 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 41719122  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 23318914 - 23318992
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgc 97  Q
    |||||||||||||||||||||| || |  ||||||||||| ||| |||||||| |  ||||||||||||||||||||||    
T  23318914 aaaagtggaaagagatggatgacaacgatgttgccaattttcacttagcaatgacaaactcggtattgtcaagtattgc 23318992  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 19944150 - 19944205
Alignment:
Q  138 aagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttga 193  Q
    |||||||||||||||||  |||||||||| || ||||||||||||| ||| |||||    
T  19944150 aagaagagcttgtatggcctaaaacaagctccaagacaatggtatatgaagtttga 19944205  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 27878405 - 27878314
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878405 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 27878314  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 30968030 - 30968121
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30968030 gaaaagcggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 30968121  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 8480501 - 8480425
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtatt 95  Q
    ||||||||||| |||||||||| || |   || ||||||||||| ||||||| || ||||||||||| |||||||||    
T  8480501 aaaagtggaaaaagatggatgacaacgttttttccaatttgcacttagcaattgcagactcggtattttcaagtatt 8480425  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 796621 - 796566
Alignment:
Q  138 aagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttga 193  Q
    |||||||||||||||||  |||||||||| || ||||||||||||| ||| |||||    
T  796621 aagaagagcttgtatggcctaaaacaagctccaagacaatggtatatgaagtttga 796566  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 8273206 - 8273261
Alignment:
Q  138 aagaagagcttgtatggattaaaacaagcacctagacaatggtataagaaatttga 193  Q
    |||||||||||||||||  |||||||||| || ||||||||||||| ||| |||||    
T  8273206 aagaagagcttgtatggcctaaaacaagctccaagacaatggtatatgaagtttga 8273261  T

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Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 5822971 - 5822880
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5822971 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 5822880  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 2816962 - 2816868
Alignment:
Q  15 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||  |||||||||||    
T  2816962 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagatatggtggactcggtattgtcaagtattgaagaaaagaagac 2816868  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 42585579 - 42585657
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgc 97  Q
    |||||||||||||||||||||| || |  ||||||||||||||| |||||||||| || |||||||| |||||||||||    
T  42585579 aaaagtggaaagagatggatgacaacgttgttgccaatttgcacttagcaatggcagattcggtattatcaagtattgc 42585657  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 25877455 - 25877532
Alignment:
Q  19 aaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattg 96  Q
    ||||||| |||||||||||||| ||||   |||||||||||||| ||| |||||| |||||| |||||||||||||||    
T  25877455 aaaagtgaaaagagatggatgacaatgttattgccaatttgcacttagtaatggcagactcgatattgtcaagtattg 25877532  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 47277486 - 47277428
Alignment:
Q  15 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggc 73  Q
    |||||||| ||||||||||| ||||||| |   ||||||||||||||||||||||||||    
T  47277486 gacgaaaaatggaaagagatagatgatattattgttgccaatttgcacctagcaatggc 47277428  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 826100 - 826191
Alignment:
Q  18 gaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  826100 gaaaagtggaaagagatggatgataattccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagac 826191  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 13843497 - 13843405
Alignment:
Q  15 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaag 107  Q
    ||||||||||  |||||||| |||||||| |  ||||||||||||||||| |||||||  |||||| ||||||||||||||| ||||||||||    
T  13843497 gacgaaaagtaaaaagagatagatgataacgttgttgccaatttgcaccttgcaatggtagactcgatattgtcaagtattgttgaaaagaag 13843405  T

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