View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13292_high_2 (Length: 721)

Name: NF13292_high_2
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13292_high_2
NF13292_high_2
[»] chr7 (4 HSPs)
chr7 (24-434)||(32139333-32139741)
chr7 (435-713)||(22489242-22489527)
chr7 (449-573)||(22492347-22492473)
chr7 (435-515)||(48944282-48944362)
[»] chr6 (4 HSPs)
chr6 (435-713)||(19305841-19306118)
chr6 (435-713)||(10122322-10122606)
chr6 (435-514)||(10126551-10126630)
chr6 (434-515)||(19310336-19310417)
[»] chr1 (9 HSPs)
chr1 (435-713)||(28244189-28244474)
chr1 (434-713)||(11476560-11476864)
chr1 (434-673)||(11318579-11318843)
chr1 (439-514)||(11471316-11471391)
chr1 (572-712)||(17431502-17431647)
chr1 (435-514)||(17430759-17430839)
chr1 (438-515)||(17431702-17431780)
chr1 (435-515)||(50017598-50017678)
chr1 (612-662)||(50017780-50017830)
[»] chr5 (6 HSPs)
chr5 (435-651)||(25383924-25384144)
chr5 (436-515)||(25379439-25379518)
chr5 (435-515)||(25484265-25484343)
chr5 (435-500)||(23231609-23231674)
chr5 (453-515)||(25482726-25482788)
chr5 (676-713)||(25383881-25383918)
[»] chr2 (4 HSPs)
chr2 (435-713)||(43159121-43159428)
chr2 (435-713)||(38250095-38250404)
chr2 (434-514)||(38255469-38255549)
chr2 (439-513)||(43154096-43154170)
[»] chr3 (3 HSPs)
chr3 (612-709)||(33862946-33863043)
chr3 (587-644)||(33862492-33862553)
chr3 (435-515)||(33862348-33862429)
[»] chr4 (5 HSPs)
chr4 (435-515)||(28167591-28167672)
chr4 (435-515)||(28166901-28166982)
chr4 (435-509)||(48796046-48796120)
chr4 (438-515)||(54362223-54362301)
chr4 (438-502)||(48792812-48792876)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 24 - 434
Target Start/End: Complemental strand, 32139741 - 32139333
Alignment:
Q  24 ataactcattttaataaatttggtgacgacttcgttgttctcgaaagaccctcaaattccatgtcacaactgttgatgacctatctaagaggacatttag 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32139741 ataactcattttaataaatttggtgacgacttcgttgttctcgaaagaccctcaaattccatgtcacaactgttgatgacctatctaagaggacatttag 32139642  T
Q  124 atagtcaaatctaacatagagaccatttgttatagnnnnnnn-acaaagaaaatcatcgttgagaatattattatatttgtttgttacgacttttaaaaa 222  Q
    ||| |||||||||||||||| ||||||||||||||        | |||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  32139641 atactcaaatctaacatagaaaccatttgttatagttttttttaaaaagaaaatcatcgttgagaatattat---atttgtttgttacgacttttaaaaa 32139545  T
Q  223 taatcagaaaacaacttcaatgatagtttggtttcttcatcctcattcataccatagtatgttacccttacgtctagcttttatttagggttgtaggttg 322  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32139544 aaatcagaaaacaacttcaatgatagtttggtttcttcatcctcattcataccatagtatgttacccttacgtctagctttcatttagggttgtaggttg 32139445  T
Q  323 cnnnnnnnnaagaaaaatcacgtatgtttgcatttgcaatcattagtgtatacatgaattgaaaaagaatcttcacgtaatagcaagtcattcaattcac 422  Q
    |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32139444 ctttattttaagaaaaatcacgtatgtttgcatttgcaatcattagtgtatacatgaattgaaaaagaatcttcacgtaatagcaagtcattcaattcac 32139345  T
Q  423 ctgtagtgatga 434  Q
     |||||||||||    
T  32139344 gtgtagtgatga 32139333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 435 - 713
Target Start/End: Original strand, 22489242 - 22489527
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnn--tcaat 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | | ||||||||||||              |||||    
T  22489242 gggttccacttgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacacccttttttctataaaaaaaactcaat 22489341  T
Q  533 taaaggagaataagagaac--gtgactgagagaacaagtgaaaaatcaaaaacgcattcctcttctcttctcccgtacgac----gaacccaccacccac 626  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||||||||||| |||| |||||||||||| ||||||    |||||||||||||||    
T  22489342 taaaggagaataagagaacacgtgactcagagaacaagtgaaaactcaaaaacgcagtcctattctcttctcccctacgacatcagaacccaccacccac 22489441  T
Q  627 catcaacttttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 713  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||  | |||||||| ||| |||||||||||||||||||||||||||    
T  22489442 catca-cttttctccgccaccgccgacacctccctccgtcgccatcctcctctccaccatcgaccaccgttcctcttcactttctct 22489527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 449 - 573
Target Start/End: Complemental strand, 22492473 - 22492347
Alignment:
Q  449 taacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnntcaattaaaggagaataagag 548  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||            |||||||||||||||||||||    
T  22492473 taacattgggtattttaagttatataacattgcccaatcaggatgtgccacgtggcacaccctttttaaaaaaaaaaactcaattaaaggagaataagag 22492374  T
Q  549 aac--gtgactgagagaacaagtgaaa 573  Q
    |||  |||||||||||||| |||||||    
T  22492373 aacatgtgactgagagaacgagtgaaa 22492347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 48944282 - 48944362
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||| |  ||||||||||||||||| |||||| |||||    
T  48944282 gggttccacttgtgtaacattggacattttatgttatataacattgttcagtcagggtgtgccacgtggcacacctttttt 48944362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 435 - 713
Target Start/End: Original strand, 19305841 - 19306118
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnntcaatta 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||            |||||||    
T  19305841 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttttttaaaaaaaaaa-tcaatta 19305939  T
Q  535 aaggagaataagagaacgtgactgagagaacaagtgaaaaatcaaaaacgcattcctcttctcttctcccgtacgacgaacccaccacccaccatcaact 634  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19305940 aaggagaataagagaacgtgactaagagaacaagtgaaaaataaaaaacgcattcctcttctcttctcctgtacgacgaacccaccacccaccatcaact 19306039  T
Q  635 tttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19306040 tttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 19306118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 435 - 713
Target Start/End: Original strand, 10122322 - 10122606
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnntcaatta 534  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||            |||||||    
T  10122322 gggttccacttgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacaccctttttaaaaaaaaaaa-tcaatta 10122420  T
Q  535 aaggagaataagaga----acgtgactgagagaacaagtgaaaaatcaaaaacgcattcctcttctcttctcccgtacgacgaacccaccac----ccac 626  Q
    |||||||||||||||    ||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    ||||    
T  10122421 aaggagaataagagagaacacgtgactgagagaaga-gtgaaaaatcaaaaacgcattcctcttcacttctccagtacgacgaacccaccacccacccac 10122519  T
Q  627 catcaacttttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 713  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  10122520 catcaacttttctccgccaccgccgacacttacctccgccgtcgccgtcctctccgccaacggccatcgttcctcttcactttctct 10122606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 435 - 514
Target Start/End: Complemental strand, 10126630 - 10126551
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttt 514  Q
    |||||||||||||||||||| | | |||||| ||||||||||||||||| || ||||||||||||||| |||||||||||    
T  10126630 gggttccacttgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccctttt 10126551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 515
Target Start/End: Complemental strand, 19310417 - 19310336
Alignment:
Q  434 agggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    |||||| |||||||||||||| |   |||||| ||||||||||||||||| || ||| ||||||||||| |||||| |||||    
T  19310417 agggtttcacttgtgtaacatagtcgattttatgttatataacattgtccaataaggatgtgccacgtggcacacctttttt 19310336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 435 - 713
Target Start/End: Original strand, 28244189 - 28244474
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgt--gacacaccctttttnnnnnnnnnnnntcaat 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||            |||||    
T  28244189 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacaccctttttaaaaaaaaaa--tcaat 28244286  T
Q  533 taaaggagaataagaga----acgtgactgagagaacaagtgaaaaatcaaaaacgcattcctcttctcttctcccgtacgacgaacccaccac----cc 624  Q
    |||||||||||||||||    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||    
T  28244287 taaaggagaataagagagaacacgtgactgagagaaga-gtgaaaaatcaaaaacgcattcctcttctcttctccagtacgacgaacccaccacccaccc 28244385  T
Q  625 accatcaacttttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcactttctct 713  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  28244386 accatcaacttttctccgccaccgccgacacttccctccgtcgccgctgtcctctccgccaacggccatcgttcctcttcactttctct 28244474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 434 - 713
Target Start/End: Complemental strand, 11476864 - 11476560
Alignment:
Q  434 agggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnnt-caat 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||             | ||||    
T  11476864 agggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacacccttttaaaaaaaaaaaaattcaat 11476765  T
Q  533 taaaggagaataagaga----acgtgactgagagaacaagtgaaaaatcaaaaacgcattcctcttctcttctccc-------------gtacgacgaac 615  Q
    |||||||||||||||||    ||||||||||||||| | |||||||||||||||| |||||||||||||||||||              |||||||||||    
T  11476764 taaaggagaataagagagaacacgtgactgagagaaga-gtgaaaaatcaaaaacacattcctcttctcttctcctcttctcttctccagtacgacgaac 11476666  T
Q  616 ccaccacccacc--------atcaacttttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcact 707  Q
    ||||||||||||        |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  11476665 ccaccacccacccacccaccatcaacttttctcccccaccgccgacgcttccctccgccaccgccgtcctctccgccaacggccaccgttcctcttcact 11476566  T
Q  708 ttctct 713  Q
    ||||||    
T  11476565 ttctct 11476560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 434 - 673
Target Start/End: Complemental strand, 11318843 - 11318579
Alignment:
Q  434 agggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttt-tnnnnnnnnnnnntcaat 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||              |||||    
T  11318843 agggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacacccttttaaaaaaaaaaaaattcaat 11318744  T
Q  533 taaaggagaataagaga----acgtgactgagagaacaagtgaaaaatcaaaaacgcat-------------tcctcttctcttctcccgtacgacgaac 615  Q
    |||||||||||||||||    |||||||||||||||  ||||||||||||||||| |||             |||||||||||||||| |||||||||||    
T  11318743 taaaggagaataagagagaacacgtgactgagagaa-gagtgaaaaatcaaaaacacattcctcttctcttctcctcttctcttctccagtacgacgaac 11318645  T
Q  616 cca--------ccacccaccatcaacttttctccgccaccgccgacacttccctccgccgccgccg 673  Q
    |||        ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  11318644 ccaccacccacccacccaccatcaacttttctcccccaccgccgacgcttccctccgcctccgccg 11318579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 439 - 514
Target Start/End: Original strand, 11471316 - 11471391
Alignment:
Q  439 tccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttt 514  Q
    |||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11471316 tccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 11471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 572 - 712
Target Start/End: Complemental strand, 17431647 - 17431502
Alignment:
Q  572 aaaatcaaaaacgcattcc-tcttctc-ttctcccgtacgac----gaacccaccacccaccatcaacttttctccgccaccgccgacacttccctccgc 665  Q
    |||| |||||||||||||| ||||||| ||||||| |||||     |||| |||||||||||||||||| | ||||||||||||||| |  ||| ||| |    
T  17431647 aaaaccaaaaacgcattccctcttctccttctcccctacgatatcagaactcaccacccaccatcaactatcctccgccaccgccgatatctcc-tcctc 17431549  T
Q  666 cgccgccgtcctctccgccaacgaccaccgttcctcttcactttctc 712  Q
    ||||| | |||||||||||| |||||||| ||||||||| |||||||    
T  17431548 cgccgtcctcctctccgccatcgaccacctttcctcttctctttctc 17431502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 514
Target Start/End: Original strand, 17430759 - 17430839
Alignment:
Q  435 gggttccacttgtgtaacattgggt-attttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttt 514  Q
    ||||||||||||||||||||||||  |||||| ||||||||| ||||||| |||||| ||||||||||| |||||| ||||    
T  17430759 gggttccacttgtgtaacattggggcattttatgttatataatattgtccaatcaggatgtgccacgtggcacaccatttt 17430839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 515
Target Start/End: Complemental strand, 17431780 - 17431702
Alignment:
Q  438 ttccacttgtgtaacattgggt-attttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    |||||||||||||| ||||||  |||||| ||||||||||||||||| |||||||||||||| ||| |||||| |||||    
T  17431780 ttccacttgtgtaatattgggacattttatgttatataacattgtccaatcagggtgtgccatgtggcacacctttttt 17431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 50017598 - 50017678
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    ||||||| |||||||||||| | | |||||| ||||||||||||||||| || ||| | ||||||||| ||||||||||||    
T  50017598 gggttccgcttgtgtaacatagtggattttatgttatataacattgtccaataaggatatgccacgtggcacacccttttt 50017678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 612 - 662
Target Start/End: Original strand, 50017780 - 50017830
Alignment:
Q  612 gaacccaccacccaccatcaacttttctccgccaccgccgacacttccctc 662  Q
    |||| ||||||||||| |||||| | |||||||||||||||||| ||||||    
T  50017780 gaactcaccacccaccttcaactatcctccgccaccgccgacacctccctc 50017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 435 - 651
Target Start/End: Complemental strand, 25384144 - 25383924
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnntcaatta 534  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||             |||||||    
T  25384144 gggttccacttgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacaccctttt--aaaaaaaaaaatcaatta 25384047  T
Q  535 aaggagaataagagaac--gtgactgagagaacaagtgaaaaatcaaaaacgcattcctcttctcttctcccgtacgac----gaacccaccacccacca 628  Q
    ||||||||||| |||||  ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||    |||||||||||||||||    
T  25384046 aaggagaataaaagaacacgtgactgagagaacaagcgaaaactcaaaaacgcattcctcttctcttctcccctgcgacatcagaacccaccacccacca 25383947  T
Q  629 tcaacttttctccgccaccgccg 651  Q
    | |||||||||||||||||||||    
T  25383946 ttaacttttctccgccaccgccg 25383924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 436 - 515
Target Start/End: Original strand, 25379439 - 25379518
Alignment:
Q  436 ggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    ||||||||||||||||||| | | |||||| ||||||||||||||||| || |||||||||||| || ||||||||||||    
T  25379439 ggttccacttgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacacccttttt 25379518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 515
Target Start/End: Complemental strand, 25484343 - 25484265
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    |||||||||||||||||||| | | |||||  ||||||||||||||||| || ||||||||||||||| |||| |||||||    
T  25484343 gggttccacttgtgtaacatagtggatttt--gttatataacattgtccaataagggtgtgccacgtggcacatccttttt 25484265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 23231674 - 23231609
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacg 500  Q
    |||||||||||||||||||||||  |||||| |||| |||||||||||| |||| ||||| |||||    
T  23231674 gggttccacttgtgtaacattggccattttatgttacataacattgtccaatcaaggtgtaccacg 23231609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 515
Target Start/End: Original strand, 25482726 - 25482788
Alignment:
Q  453 attgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    ||||| |||||||||||||||||||||| || || ||| |||||||| || ||||||||||||    
T  25482726 attggatattttaagttatataacattgcccaattaggatgtgccacatggcacacccttttt 25482788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 713
Target Start/End: Complemental strand, 25383918 - 25383881
Alignment:
Q  676 ctctccgccaacgaccaccgttcctcttcactttctct 713  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25383918 ctctccgccaacgaccaccgtttctcttcactttctct 25383881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 5e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 435 - 713
Target Start/End: Complemental strand, 43159428 - 43159121
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttttnnnnnnnnnnnntcaatta 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||             |||||||    
T  43159428 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccc-tttaaaaaaaaaaaaatcaatta 43159330  T
Q  535 aaggagaataagaga----acgtgactgagagaacaagtgaaaaatcaaaaacgcat-------------tcctcttctcttctcccgtacgacgaaccc 617  Q
    |||||||||||||||    |||||||||||||||  ||||||||||||||||| |||             |||||||||||||||| |||||||||||||    
T  43159329 aaggagaataagagagaacacgtgactgagagaa-gagtgaaaaatcaaaaacacattcctcttctcttctcctcttctcttctccagtacgacgaaccc 43159231  T
Q  618 a--------ccacccaccatcaacttttctccgccaccgccgacacttc------cctccgccgccgccgtcctctccgccaacgaccaccgttcctctt 703  Q
    |        ||||||||||||||||||||||| ||||||||||| ||||      ||||||||||||||||||||||| |||||| ||||||||||||||    
T  43159230 accacccacccacccaccatcaacttttctcccccaccgccgacgcttccctccgcctccgccgccgccgtcctctccaccaacggccaccgttcctctt 43159131  T
Q  704 cactttctct 713  Q
    ||||||||||    
T  43159130 cactttctct 43159121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 435 - 713
Target Start/End: Original strand, 38250095 - 38250404
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttt-tnnnnnnnnnnnntcaatt 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||              ||||||    
T  38250095 gggttccacttgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacacccttttaaaaaaaaaaaaattcaatt 38250194  T
Q  534 aaaggagaataagaga----acgtgactgagagaacaagtgaaaaatcaaaaacgcat-------------tcctcttctcttctcccgtacgacgaacc 616  Q
    ||||||||||||||||    |||||||||||||||  ||||||||||||||||| |||             |||||||||||||||| ||||||||||||    
T  38250195 aaaggagaataagagagaacacgtgactgagagaa-gagtgaaaaatcaaaaacacattcctcttctcttctcctcttctcttctccagtacgacgaacc 38250293  T
Q  617 ca--------ccacccaccatcaacttttctccgccaccgccgacacttc------cctccgccgccgccgtcctctccgccaacgaccaccgttcctct 702  Q
    ||        ||||||||||||||||||||||| ||||||||||| ||||      ||||||||||||||||||||||| |||||| |||||||||||||    
T  38250294 caccacccacccacccaccatcaacttttctcccccaccgccgacgcttccctccgcctccgccgccgccgtcctctccaccaacggccaccgttcctct 38250393  T
Q  703 tcactttctct 713  Q
    |||||||||||    
T  38250394 tcactttctct 38250404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 434 - 514
Target Start/End: Complemental strand, 38255549 - 38255469
Alignment:
Q  434 agggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacaccctttt 514  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  38255549 agggttccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccctttt 38255469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 439 - 513
Target Start/End: Original strand, 43154096 - 43154170
Alignment:
Q  439 tccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacccttt 513  Q
    |||||||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  43154096 tccacttgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacacccttt 43154170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 612 - 709
Target Start/End: Complemental strand, 33863043 - 33862946
Alignment:
Q  612 gaacccaccacccaccatcaacttttctccgccaccgccgacacttccctccgccgccgccgtcctctccgccaacgaccaccgttcctcttcacttt 709  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||| | || ||||||| |||||||||| ||||    
T  33863043 gaacccacaacctaccatcaacttttctccgccaccgccgacacctccctccaccgccgtcctcctctctgtcatcgaccactgttcctcttctcttt 33862946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 644
Target Start/End: Original strand, 33862492 - 33862553
Alignment:
Q  587 ttcctcttctcttctcccgtacgac----gaacccaccacccaccatcaacttttctccgcc 644  Q
    |||||||||||||||||| ||||||    |||||||||||| ||||||||||||||||||||    
T  33862492 ttcctcttctcttctcccctacgacatcagaacccaccacctaccatcaacttttctccgcc 33862553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 33862348 - 33862429
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaa-gttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    |||||||||||||||| ||||||  ||||| | ||||||||||| || ||  |||||||||||||| || ||||||||||||    
T  33862348 gggttccacttgtgtagcattggccatttttatgttatataacactgcccattcagggtgtgccacatggcacacccttttt 33862429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 435 - 515
Target Start/End: Complemental strand, 28167672 - 28167591
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaa-gttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||| |  |||||||||||||||||  ||||||||||||    
T  28167672 gggttccacttgtgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtcgcacacccttttt 28167591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 515
Target Start/End: Original strand, 28166901 - 28166982
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaa-gttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    ||||||||||| ||||||||||||  |||||| |||||||||||||| |  |||||||||||||||||| |||||| |||||    
T  28166901 gggttccacttatgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtggcacacctttttt 28166982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 48796120 - 48796046
Alignment:
Q  435 gggttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtgacacacc 509  Q
    |||||||||||||| ||||||||  |||| | | |||||||||||| || |||||||||||||||||| ||||||    
T  48796120 gggttccacttgtgcaacattggccatttcatggtatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 438 - 515
Target Start/End: Original strand, 54362223 - 54362301
Alignment:
Q  438 ttccacttgtgtaacattgggtattttaa-gttatataacattgtcctatcagggtgtgccacgtgacacacccttttt 515  Q
    |||||||||| |||||||||| ||||| | |||||||||||||| |  ||||||||||||||| || ||||||||||||    
T  54362223 ttccacttgtataacattgggcatttttatgttatataacattgcctaatcagggtgtgccacatggcacacccttttt 54362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 502
Target Start/End: Original strand, 48792812 - 48792876
Alignment:
Q  438 ttccacttgtgtaacattgggtattttaagttatataacattgtcctatcagggtgtgccacgtg 502  Q
    |||||||||||||||||||   |||||| | |||||||||||| || ||||||||||||||||||    
T  48792812 ttccacttgtgtaacattgaccattttatggtatataacattgcccaatcagggtgtgccacgtg 48792876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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