View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_high_7 (Length: 408)
Name: NF13292_high_7
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 20519483 - 20519084
Alignment:
| Q |
9 |
gcagagacctctaaaatctgtattgctacttcaattgcatacctcaatttagaactatgatgtaaactatactacaattgcataacacaatttagacata |
108 |
Q |
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| T |
20519483 |
gcagagatctctaaaatctgtattgctacttcaattgcatacctcaaattagaactatgatgtaaactatactacaattgcataacacaatttagacata |
20519384 |
T |
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| Q |
109 |
tggtacaaactagaaagtaagaagctttatattgagaatgaatcacacacacctttggagaatttgagaaaaagtggcaccccacaatttcttcctaaac |
208 |
Q |
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| T |
20519383 |
tggtacaaactagaaagtaagaagctttatattgagaatgaatcacacacacctttggagaatttgagaaaaagtggcaccccacaatttcttcctaaac |
20519284 |
T |
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| Q |
209 |
agtccatcagcacaaggtctcccttcccaaagttccaaaccagcagtcacaataccaggcacaagaacaacaggatgaagtgctttaaccccttcatttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519283 |
agtccatcagcacaaggtctcccttcccaaagttccaaaccagcagtcacaataccaggcacaagaacaacaggatgaagtgctttaaccccttcatttt |
20519184 |
T |
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| Q |
309 |
tcatcctcaaaccaggtgaatcaaccacttcaaaaccagttaatgtagctggcaaaaactgatacaaaaatgaaagaagccaccaaattgtacacacata |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519183 |
tcatcctcaaaccaggtgaatcaaccacttcaaaaccagttaatgtagctggcaaaaactgatacaaaaatgaaagaagccaccaaattgtacacacata |
20519084 |
T |
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