View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_14 (Length: 349)
Name: NF13292_low_14
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 3612031 - 3611711
Alignment:
| Q |
11 |
agagaaggctttttatattcaatctaactgaaataaacaaaaaggatagttgctctataagtgcagcgggtttgcaaagagataactttcgatcacccaa |
110 |
Q |
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| T |
3612031 |
agagaaggctttttatattcaatctaactgaaataaacaaaaaggatagttgctctataagtgcagcgggtttgcaaagagataactttcgatcacccaa |
3611932 |
T |
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| Q |
111 |
aaattacagaaaatatgattctatcgacnnnnnnnnnnnnnnnnn-gcatcgaaaactatcttcctatcagtttatttcaaatgttgaacaatccatgaa |
209 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611931 |
aaattacagaaaatatgattctatcgacttttttttttgtttttttgcatcgaaaactatcttcctatcagtttatttcaaatgttgaacaatccatgaa |
3611832 |
T |
|
| Q |
210 |
gcaattgtcaacaacaaaactgtattttctaaatatttatataacccatcaacactctaaaataagccttactagactcataatatttcaggaatatcca |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611831 |
gcaattgtcaacaacaaaactgtattttttaaatatttatataacccatcaacactctaaaataagccttactagactcataatatttcaggaatatcca |
3611732 |
T |
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| Q |
310 |
tacataaaattgtcacataaa |
330 |
Q |
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||||||||||||||||||||| |
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| T |
3611731 |
tacataaaattgtcacataaa |
3611711 |
T |
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