View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_19 (Length: 302)
Name: NF13292_low_19
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 2033351 - 2033091
Alignment:
| Q |
17 |
ataacaaacgcgattaaagtttcattagaatgagcaaaatcttcaaaatacaaatgttactctcaaaatataaagtgaaatataaatagacgtaactacc |
116 |
Q |
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| T |
2033351 |
ataacaaacgcgattaaagtttcattagaatgagcaaaatcttcaaaatacaaatgttactctcaaaatatatagtgaaatataaatagacgtaactacc |
2033252 |
T |
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| Q |
117 |
cttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgtcagacactcaacgcgcatccaatctgaaatttcagtgcta |
216 |
Q |
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| T |
2033251 |
cttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgttagacactcaacgcgcatccaatctgaaatttcggtgcta |
2033152 |
T |
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| Q |
217 |
caaatgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacatacc |
277 |
Q |
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| T |
2033151 |
caaatgataatgaccaaatttcaaggagcaaataaattttacacatatgcataaacatacc |
2033091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 110 - 277
Target Start/End: Complemental strand, 2054504 - 2054338
Alignment:
| Q |
110 |
aactacccttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgtcagacactcaacgcgcatccaatctgaaatttc |
209 |
Q |
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| T |
2054504 |
aactacccttagccgaattataacaaaaggcccattacatattatttaa-cagacacaaacatgtgtaatacactcaacgcgcatccaatctgaaatttc |
2054406 |
T |
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| Q |
210 |
agtgctacaaatgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacatacc |
277 |
Q |
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| T |
2054405 |
agtgctacaaatgataataacaaaatatcaaggagcaaataaattttacagatgtacataaacatacc |
2054338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 1950385 - 1950441
Alignment:
| Q |
221 |
tgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacatacc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
1950385 |
tgataataaccaaatttcaaggagcaaataaattttacacatatacatatacatacc |
1950441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 42408489 - 42408445
Alignment:
| Q |
94 |
aaatataaatagacgtaactacccttatctcaattataacaaaag |
138 |
Q |
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| T |
42408489 |
aaatataaagagactaaactacccttagctcaattataacaaaag |
42408445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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