View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_20 (Length: 294)
Name: NF13292_low_20
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 21915426 - 21915689
Alignment:
| Q |
13 |
aatatcctggctaataaaagtgggtaaaacatcccaccagaaactacttatgacaccatgtccgtgattatccaacttatctgtacaactgtttacttca |
112 |
Q |
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| T |
21915426 |
aatatcctggctaataaaagtgggtaaaacatcacaccagaaactactcgtgacaccatatccatgattagccaacttatctgtacaactgtttacttca |
21915525 |
T |
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| Q |
113 |
cgataaatatgcaaagaaaggatcaatacaccaacgttcgtacaattatgccactgattgcgcaaagcaaaaggatccaaagaagagttctaaaaaaccc |
212 |
Q |
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| T |
21915526 |
cgataaatatgcgaagaaaggatcaatacaccaacgttcatacaattatgccactgattgcgcaaagcaaaaggaaccagagaagagttctaaaaaaccc |
21915625 |
T |
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| Q |
213 |
tcagagcactctgagaattcccctcgatccaaagatacttctaacgatgcctgattccatattc |
276 |
Q |
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| T |
21915626 |
tcagagcactctgagaattcccctcgatccaaagatacttctaacgatgcctgattccatattc |
21915689 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 19091923 - 19092109
Alignment:
| Q |
16 |
atcctggctaataaaagtgggtaaaacatcccaccagaaactacttatgacaccatgtccgtgattatccaacttatctgtacaactgtttacttcacga |
115 |
Q |
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||||||||||||||||| | |||||||||||||||||||| | || ||||| |||| || || ||| ||||||||| | ||||| ||| | ||| || |
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| T |
19091923 |
atcctggctaataaaagcgagtaaaacatcccaccagaaaaaatttgtgacatcatgcccatggttagtcaacttatcagaacaaccgttaccctcatga |
19092022 |
T |
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| Q |
116 |
taaatatgcaaagaaaggatcaatacaccaacgttcgtacaattatgccactgattgcgcaaagcaaaaggatccaaagaagagttc |
202 |
Q |
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| T |
19092023 |
tagatatgggaagacaagatcgagataccagcattcacacaattgtgccaccgattgcgcaaagaaaaaataaccaaagaagtgttc |
19092109 |
T |
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