View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_21 (Length: 282)
Name: NF13292_low_21
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 47523960 - 47524216
Alignment:
| Q |
13 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgagga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47523960 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgagga |
47524059 |
T |
|
| Q |
113 |
tgctatagacacgtggacaaaagcatttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacact |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47524060 |
tgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacact |
47524159 |
T |
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| Q |
213 |
atcatgtgccttaaatccctgaatagacctatatggccttgtattgcttgatggtag |
269 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47524160 |
atcatgtgccataaatccctgaatagacctgtatggccttgtattgcttgatggtag |
47524216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 47529329 - 47529571
Alignment:
| Q |
10 |
aagaatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccga |
109 |
Q |
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||||| ||||| |||||||||||||||||||||||||| | || |||||| |||| ||||| ||||||||||| | |||| ||||||||||||| ||||| |
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| T |
47529329 |
aagaacatcgaggacaaggaatgtgtcgtttgttgatggatgaacttgagaaacaattgactcgcttaggagtagaaagcatggttttgcattcatccga |
47529428 |
T |
|
| Q |
110 |
ggatgctatagacacgtggacaaaagcatttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaac |
209 |
Q |
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| T |
47529429 |
ggatgctatagacacatggacaaaatcttttggttttgagaggatgacaggtaaagacaagcgtcaatttgttgatattactttcttagaatttcaggac |
47529528 |
T |
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| Q |
210 |
actatcatgtgccttaaatccctgaatagacctatatggcctt |
252 |
Q |
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| T |
47529529 |
actgtcatgtgccttaaaccactgaagaaacctaaatggcctt |
47529571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 47551009 - 47551222
Alignment:
| Q |
13 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgagga |
112 |
Q |
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||||||||||||||||||||||| ||||||||||| | | |||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||| |
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| T |
47551009 |
aatatcgaagacaaggaatgtgttgtttgttgatgaaggggcttgaggaacaattgattaacttaggagttgggagcttggttttgcattcctccaagga |
47551108 |
T |
|
| Q |
113 |
tgctatagacacgtggacaaaagcatttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacact |
212 |
Q |
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|||||||||||| |||| |||| ||||| ||||| | ||| || |||||||||||| |||||||| || | |||||||| ||||||||| ||||| |
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| T |
47551109 |
tgctatagacacttggaaaaaatcatttcattttgttgagatgacgaatgaagacaagtgtaaatttgttcattatactttctttgaatttcaggacact |
47551208 |
T |
|
| Q |
213 |
atcatgtgccttaa |
226 |
Q |
| |
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|||||||| ||||| |
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| T |
47551209 |
atcatgtgtcttaa |
47551222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 44870463 - 44870214
Alignment:
| Q |
16 |
atcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgaggatgc |
115 |
Q |
| |
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||||| ||| |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||| |
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| T |
44870463 |
atcgaggacgaggaatgtgtcgtttgttgatggatgagcttgaggaacagttgactcgcttaggagtaggaagattggttttgcattcatctgaagatgc |
44870364 |
T |
|
| Q |
116 |
tatagacacgtggacaaaagcatttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacactatc |
215 |
Q |
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|||| |||| ||||||||| | ||||||||||||||||| || | |||||||||||| || || ||||||| ||||||||||||||||| ||| ||||| |
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| T |
44870363 |
tataaacacttggacaaaatcgtttggttttgctaggatgacgagtgaagacaagtgtaaacttattgataatactttcttagaatttcacaactctatc |
44870264 |
T |
|
| Q |
216 |
atgtgccttaaatccctgaatagacctatatggccttgtattgcttgatg |
265 |
Q |
| |
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|||||||||||| | ||||||| ||||||||||||| | ||||||||||| |
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| T |
44870263 |
atgtgccttaaaccactgaatatacctatatggcctcgcattgcttgatg |
44870214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 9819619 - 9819367
Alignment:
| Q |
13 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgagga |
112 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| | ||| ||||| ||||||| || ||||||||||||| | || || |||||||||| ||||| |
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| T |
9819619 |
aatatcgacgacaaggaatgtgtcatttgttgatggatgagattgagaaacagttaactcgcttaggagttgagaaattacttctgcattcctcagagga |
9819520 |
T |
|
| Q |
113 |
tgctatagacacgtggacaaaagcatttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacact |
212 |
Q |
| |
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|||||| |||| ||||||| | ||||||||||||| ||||| || | |||| |||||||| ||| ||||| | ||||| |||||||||||||| | | |
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| T |
9819519 |
tgctatgaacacttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagt |
9819420 |
T |
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| Q |
213 |
atcatgtgccttaaatccctgaatagacctatatggccttgtattgcttgatg |
265 |
Q |
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| |||||| || ||| | ||||| | ||||| ||||||||| ||||||||||| |
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| T |
9819419 |
accatgtgtctcaaagcactgaaaacacctaaatggccttgcattgcttgatg |
9819367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 9854361 - 9854613
Alignment:
| Q |
13 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgagga |
112 |
Q |
| |
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|||||||| |||||||||| |||| |||||||||| | ||| ||||| ||||||| || ||||||||||||| | || || |||||||||| ||||| |
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| T |
9854361 |
aatatcgacgacaaggaatctgtcatttgttgatggatgagattgagaaacagttaactcgcttaggagttgagaaattacttctgcattcctcagagga |
9854460 |
T |
|
| Q |
113 |
tgctatagacacgtggacaaaagcatttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacact |
212 |
Q |
| |
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|||||| ||| ||||||||| ||||||||||||| ||||| || | |||| |||||||| ||| ||||| | ||||| |||||||||||||| | | |
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| T |
9854461 |
tgctatgaacatttggacaaaatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaatagt |
9854560 |
T |
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| Q |
213 |
atcatgtgccttaaatccctgaatagacctatatggccttgtattgcttgatg |
265 |
Q |
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| |||||| || ||| | ||||| | |||||||||| |||| ||||||||||| |
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| T |
9854561 |
accatgtgtctcaaagcactgaaaacacctatatggtcttgcattgcttgatg |
9854613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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