View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_24 (Length: 236)
Name: NF13292_low_24
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_24 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 55878917 - 55879141
Alignment:
| Q |
7 |
gttggatagtattagttgcacattagttaagattttttaatttagctatggtcactatgtgaagtttatcatacactcattgtaatcatcttttattatt |
106 |
Q |
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| T |
55878917 |
gttggatagtattagttgcacattagttaagatttgttagtttagctacggtcactatgttaagtgtatcatacacccagtgtaatcatcttttcttatt |
55879016 |
T |
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| Q |
107 |
ctaccaactgtaaagtgtatcagctgcaaattagttaagatttcaactttgtctatccaccaatttcttttatta--tgctttgaatagatttagtagca |
204 |
Q |
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| T |
55879017 |
ctaccaaatgtaaagtgtatcagctgcaaattaattaagatttcaactttgtctatccaccaatttcttttattatttgctttgaatagatttagtagca |
55879116 |
T |
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| Q |
205 |
tccacacaactgctcttttaattag |
229 |
Q |
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| T |
55879117 |
tccacacaactgctcctataattag |
55879141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 46622534 - 46622484
Alignment:
| Q |
186 |
ttgaatagatttagtagcatccacacaactgctcttttaattagaaaaatt |
236 |
Q |
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| T |
46622534 |
ttgaatagattttgtagcttccacacaactactcctttaattagcaaaatt |
46622484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 9062440 - 9062288
Alignment:
| Q |
6 |
agttggatagtattagttgcacattagttaagattttttaatttagctatggtcactatgtgaagtttatcatacactcattgtaatcatcttttattat |
105 |
Q |
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| T |
9062440 |
agttggatagtattagttgcacattagttaagatttgttagtttagctacaatcactatgtaaagtgtatcatacactcagtgtaatcatcttttcttat |
9062341 |
T |
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| Q |
106 |
tctaccaactgtaaagtgtatcagctgcaaattagttaagatttcaactttgt |
158 |
Q |
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| T |
9062340 |
tctaccatctgtaaagtgtatcagctgcaaatttgttaagatttcaactttgt |
9062288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 6922210 - 6922293
Alignment:
| Q |
155 |
ttgtctatccaccaatttcttttattat--gctttgaatagatttagtagcatccacacaactgctcttttaattagaaaaatt |
236 |
Q |
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| T |
6922210 |
ttgtcaatccaccaattccttttattatttgccttgaatagattttgtagcatccacacaacaattcctttaattagcaaaatt |
6922293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 38237668 - 38237585
Alignment:
| Q |
155 |
ttgtctatccaccaatttcttttattat--gctttgaatagatttagtagcatccacacaactgctcttttaattagaaaaatt |
236 |
Q |
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| T |
38237668 |
ttgtcaatccaccaattccttttattttttgccttgaatagattttgtagcatccacacaactattcctttaattagcaaaatt |
38237585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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