View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_26 (Length: 217)
Name: NF13292_low_26
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 24153870 - 24153694
Alignment:
| Q |
23 |
gtacctcctgtattgcctctaggactaagagtcgacgcggaaggtttgattatagagtctgtgcctcttgttgaggcgtttagtactgaatcggtcagtg |
122 |
Q |
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| T |
24153870 |
gtacctcctgtattgcctctaggactaagagtcaacgcggaaggtttgattatagagtctgtgcctcttgttgaggcgtttagtactgaatcggtgagtg |
24153771 |
T |
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| Q |
123 |
aagttcaagaatccgaaggaagactctatgctacatcgttgagtgataactatgctaccattctcaagctctaggtt |
199 |
Q |
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| T |
24153770 |
aagttcaagaatccgagggaagactctatgctacatcgttgagtgataactatgctaccattctcaagctctaggtt |
24153694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 24142298 - 24142133
Alignment:
| Q |
23 |
gtacctcctgtattgcctctaggactaagagtcgacgcggaaggtttgattatagagtctgtgcctcttgttgaggcgtttagtactgaatcggtcagtg |
122 |
Q |
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||||||||||| |||||||| ||||||||| || | | | ||||||| ||| ||||| |||||||||||||||||| |||| |||||| ||| ||||||| |
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| T |
24142298 |
gtacctcctgttttgcctcttggactaagaatcaatgagcaaggtttaattttagaggctgtgcctcttgttgaggggtttggtactggatcagtcagtg |
24142199 |
T |
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| Q |
123 |
aagttcaagaatccgaaggaagactctatgctacatcgttgagtgataactatgctaccattctca |
188 |
Q |
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| T |
24142198 |
aagttcatgaagctgagggaaaactctatgctacatcgttgcgtgatagctatgttaacattctca |
24142133 |
T |
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