View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_3 (Length: 583)
Name: NF13292_low_3
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 32 - 572
Target Start/End: Original strand, 39136104 - 39136645
Alignment:
| Q |
32 |
ccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttcta-ttatgaacaaaatttcttgcgtttcctaagcaaaa |
130 |
Q |
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| T |
39136104 |
ccattctcacgataaatctgcagaggtttctgattttatgagaagttttccatgaattcttctgcttatgaacaaaatttcttgcatttcctaagcaaaa |
39136203 |
T |
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| Q |
131 |
gttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaattagaatatgaaaaattagaataattacttaccta |
230 |
Q |
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| T |
39136204 |
gttgtcattgtgctctcatgatcgtaggtgttttggtccatttcacaaaaatgctttgacaacaattagaatatgaaaaattagaataattacttaccta |
39136303 |
T |
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| Q |
231 |
aattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttttacctcatccgtacnnnnnnncctttttaaggt |
330 |
Q |
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| T |
39136304 |
aattggcacaatttaatactacctactgtgattttagtcttcaaaattaattgttccaacacatttttacctcatccgtacaaaaaaacctttttaaggt |
39136403 |
T |
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| Q |
331 |
actaaaagtaaatacacattaattgannnnnnnncaacctcttttcaataatctttctcggacttggttactaaataagtatggttcaattttgtcnnnn |
430 |
Q |
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| T |
39136404 |
actaaaagtaaatacacattaattgattttttttcaacctcttttcaataatctttctcggacttggttactaaataagtatggttcaattttgtcaaaa |
39136503 |
T |
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| Q |
431 |
nnnnnnngtatggttcgaagagctttaagctgcgaacannnnnnnnnnnnaccatggactttaatcccaaatcatgagcaaagatttaatgagtaacatt |
530 |
Q |
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| T |
39136504 |
aaaaaaagtatggttcaaagagctttaagctgcgaacatttttattttttaccatggactttaatcccaaatcatgagcaaagatttaatgagtaacatt |
39136603 |
T |
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| Q |
531 |
atgtaaagcataataatggtatgaggtgcttgccttgttcat |
572 |
Q |
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| T |
39136604 |
atgtaaagcataataatggtatgaggtgcttgccttgttcat |
39136645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 39134447 - 39134608
Alignment:
| Q |
19 |
agttatggcatttccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaaaatttcttgcgtt |
118 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
39134447 |
agttatggcatttccattcttactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaaaatttc-tgcatt |
39134545 |
T |
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| Q |
119 |
tcctaagcaaaagttgtcattgtgctctc---atgatcgtaggtgttttggtccatttcacaaa |
179 |
Q |
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| T |
39134546 |
tcctaagtaaaagttttcattgtactctcatgatgatcgtatgtg-tttggtccatttcacaaa |
39134608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 39013649 - 39013472
Alignment:
| Q |
19 |
agttatggcatttccattctcactataaagctgcaaagtgttctaattttctgagaagtttttcctgaatatttctattatgaacaaaatttcttgcgtt |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||| | |||| ||||||||||||||||| | ||||| |||||||||||| ||||| |||||| || |
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| T |
39013649 |
agttatggaatttccattctcactataaagctgcaatggtttctgattttctgagaagttttccatgaattcttctattatgaataaaatctcttgcatt |
39013550 |
T |
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| Q |
119 |
tcctaagcaaaagttgtcattgtgctctcatgatcgtaggtg--ttttggtccatttcacaaaaatgctttgacaacaa |
195 |
Q |
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| T |
39013549 |
tcctaatcaaaagtttccattgttctctcatgatcgtaggaggtgtttggtccatttcac-aaaatgctttgacaacaa |
39013472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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