View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_6 (Length: 459)
Name: NF13292_low_6
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 56240189 - 56240629
Alignment:
| Q |
1 |
atccctcaaatcagtgtaaaatacatcctgcaagaaactggttttttgtcagattcgatgaagaaatagttatctcgttacaagagggactataggtgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240189 |
atccctcaaatcagtgtaaaatacatcctgcaagaaattggttttttgtcagattcgatgaagaaatagttatctcgttacaagagggactataggtgca |
56240288 |
T |
|
| Q |
101 |
aacctcaattagaaaataaccagaagggtcatgttgggcagctttttgcataacctggtccgttgagcaattgatcttgtccctcagtacagataagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
56240289 |
aacctcaattagaaaataaccagaagggtcatgttgggcagctttttgcataacctggtccgttgagcaattgatcttgtccctaagtacagataagttc |
56240388 |
T |
|
| Q |
201 |
tgcccaccaagaactaacagctcttgggtctacccnnnnnnnnnnnnnnnnngaacagaggccctacatgttaactttgatggtagtagttatccaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56240389 |
tgcccaccaagaactaacagctcttgggtctacccaaaagaaaaaagaaaaagaacagaggccctacatgttaactttgatggtagtagttatccaaaat |
56240488 |
T |
|
| Q |
301 |
acattttcaaaattatgtaggcatggcattgaataccnnnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaatctcgacagagaga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56240489 |
acattttcaaaattatgtaggcatggcattgaataccttttttttggcactgaataccttgacaccatttcgaaaattatggtaaatctcgacagagaga |
56240588 |
T |
|
| Q |
401 |
acaagttctgaatcctgcacaggtatgtgctcctgaagacc |
441 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
56240589 |
acaacttctgaatcctgcacaggtatgtgctcctgaagacc |
56240629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 23946590 - 23947037
Alignment:
| Q |
1 |
atccctcaaatcagtgtaaaatacatcctgcaagaaactggttttttgtca---gattcgatgaagaaatagttatctcgttacaagagggactataggt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||| |
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|
| T |
23946590 |
atccctcaaatcagtgtaaaatacatcctgcaagaaactggttttttgtcaacagattcgatgaagaaatagtcatctcgtcacaagagggagtataggc |
23946689 |
T |
|
| Q |
98 |
gcaaacctcaattagaaaataaccagaagggtcatgttgggcagctttttgcataacctggtccgttgagcaattgatcttgtccctcagtacagataag |
197 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
23946690 |
gcatacctcaattagaaaataaccagaagggtcatgttggccagccttttgcataacctggtccgttgagcaattgatcttgtccctcaatacagataag |
23946789 |
T |
|
| Q |
198 |
ttctgcccaccaagaactaacagctcttgggtctacccnnnnnnnnnnnnnnnnngaacagaggccctacatgttaactttgatggtagtagttatccaa |
297 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
23946790 |
ttctacccaccaagaactaacagctcttgggtctaccc-------aaaagaaaaagaatagaggtcctacatgttaactttgatggtagtagttatccaa |
23946882 |
T |
|
| Q |
298 |
aat--ac---------attttcaaaattatgtaggcatggcattgaataccnnnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaa |
386 |
Q |
| |
|
||| || ||||||||||||||||||||||| ||||||||||| |||| || ||| ||||||||| || |||||||||||||||| |
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|
| T |
23946883 |
aatgaactgaattattattttcaaaattatgtaggcatgacattgaataccttttttttggcattggatagcttgacacctttacgaaaattatggtaaa |
23946982 |
T |
|
| Q |
387 |
tctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaagacc |
441 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
23946983 |
tctcgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagacc |
23947037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 16106351 - 16105907
Alignment:
| Q |
1 |
atccctcaaatcagtgtaaaatacatcctgcaagaaactggttttttgtcagattcgatgaagaaatagttatctcgttacaagagggactataggtgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |
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|
| T |
16106351 |
atccctcaaatcagtgtaaaatacatcctgcaagaaactggttttttgtcagattcgatgaagaaatagtcatctcgtcacaagagggactataggcgca |
16106252 |
T |
|
| Q |
101 |
aacctcaattagaaaataaccagaagggtcatgttgggcagctttttgcataacctggtccgttgagcaattgatcttgtccctcagtacagataagttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
16106251 |
tacctcaattagaaaataaccagaagggtcatgttggcctgccttttgcataacctggtccgttgagcaattgatcttgtccctcaatacagataagttc |
16106152 |
T |
|
| Q |
201 |
tgcccaccaagaactaacagctcttgggtctacccnnnnnnnnnnnnnnnnngaacagaggccctacatgttaactttgatggtagtagttatccaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16106151 |
tgcccaccaagaactaacagctcttgggtctaccc-------aaaagaaaaagaatagaggtcctatatgttaactttgatggtagtagttatccaaaat |
16106059 |
T |
|
| Q |
301 |
--ac---------attttcaaaattatgtaggcatggcattgaataccnnnnnnnnggcactgaataccttgacaccatttcgaaaattatggtaaatct |
389 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| |||| || ||| ||||||||| ||||||||||||||| |||||| |
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|
| T |
16106058 |
gaactgaattattattttcaaaattatgtaggcatgacattgaataccttttttttggcattggatagcttgacaccttttcgaaaattatggaaaatct |
16105959 |
T |
|
| Q |
390 |
cgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaagacc |
441 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16105958 |
cgacagagagaacaacttctgaatcctgcacaggtatgtgctcctgaagacc |
16105907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 16624755 - 16624524
Alignment:
| Q |
1 |
atccctcaaatcagtgtaaaatacatcctgcaagaaactggttttttgtcagattcgatgaagaaatagttatctcgttacaagagggactataggtgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | |||| || |||| ||||||| |||| || |||| |||||||||| | |||||| | |
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|
| T |
16624755 |
atccctcaaatcagtgtaaaatacatcctgcaaagaactagcttttagttggatttgatgaaggaataattgtctcattacaagaggtagcataggtaga |
16624656 |
T |
|
| Q |
101 |
aacctcaattagaaaataaccagaagggtcatgttgggcagctttttgcataacctggtccgttgagcaattgatcttgtccctcagtacagataagttc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || ||||||| |||||||||||||| ||||||||| |||||||||||||| | | | ||| || |
|
|
| T |
16624655 |
tacctcaatgagaaaataaccagaaggatcatgctgtccagctttctgcataacctggtctgttgagcaacagatcttgtccctcaatccggttaacgtc |
16624556 |
T |
|
| Q |
201 |
tgcccaccaagaactaacagctcttgggtcta |
232 |
Q |
| |
|
|| ||||||||| || || |||||||||||| |
|
|
| T |
16624555 |
tgttcaccaagaattagcaactcttgggtcta |
16624524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 438
Target Start/End: Complemental strand, 16624399 - 16624314
Alignment:
| Q |
353 |
aataccttgacaccatttcgaaaattatggtaaatctcgacagagagaacaagttctgaatcctgcacaggtatgtgctcctgaag |
438 |
Q |
| |
|
|||||||||||||| ||| ||| ||||||||||||||| ||||| ||||||| ||||| ||| |||| |||||||||||||||||| |
|
|
| T |
16624399 |
aataccttgacacctttttgaacattatggtaaatctccacagaaagaacaacttctggatcatgcaaaggtatgtgctcctgaag |
16624314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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