View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13292_low_9 (Length: 397)
Name: NF13292_low_9
Description: NF13292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13292_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 147 - 387
Target Start/End: Original strand, 7363804 - 7364047
Alignment:
| Q |
147 |
ctttcaatcacacgcttcgtttcttttcagaggtttacgctcactttcatttctcattaatttatcttaattacttttttaatctgtttttattcataat |
246 |
Q |
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| T |
7363804 |
ctttcaatcacacgcttcgtttcttttcagaggtttacgctcactttcatttctcattaatttatcttaattacttttttaatctgtttttattcataat |
7363903 |
T |
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| Q |
247 |
catgaatgcttctgaattaggttgctgcactaa---tggttcttcgcaagttcttccttctcgccatttctactcttctggtaataataaattactttat |
343 |
Q |
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| T |
7363904 |
catgaatgcttctgaattaggttgctgcactaatggtggttcttcgcaagttcttccttctcgccatttctactcttctggtaataataaattactttat |
7364003 |
T |
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| Q |
344 |
ttatatatttattgattcgactgattccactgattaagcctatg |
387 |
Q |
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| T |
7364004 |
ttatatatttattgattcgactgattccactaattaagcctatg |
7364047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 7363379 - 7363419
Alignment:
| Q |
56 |
aatagggaatgggttttcatgaaaaatcttttggggattgc |
96 |
Q |
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| T |
7363379 |
aatagggaatgggttttcatgaaaaatcttttggggattgc |
7363419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 7363058 - 7363094
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttag |
54 |
Q |
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| T |
7363058 |
ataaggtctataatggggtttgataattcaattttag |
7363094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 785685 - 785607
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttagcaatagggaatgggttttcatgaaaaatcttttggggattgc |
96 |
Q |
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| T |
785685 |
ataaggtctataatggggtttgataattcaattttagtaatagggaatgggttttcatgaaaaatcttttggggattgc |
785607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 780084 - 780006
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttagcaatagggaatgggttttcatgaaaaatcttttggggattgc |
96 |
Q |
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| T |
780084 |
ataaggtctataatggggtttgataattcaattttagtaatacggaatgggttttcatgaaaaatcttttggggattgc |
780006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 774402 - 774360
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttagcaatag |
60 |
Q |
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| T |
774402 |
ataaggtctataatggggtttgataattcaattttagtaatag |
774360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 32397613 - 32397691
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttagcaatagggaatgggttttcatgaaaaatcttttggggattgc |
96 |
Q |
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| T |
32397613 |
ataaggtctataatggggtttgataattcaattttagtaatagggaatgggttttcatgaaaaatcttttggggattgc |
32397691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 10379 - 10433
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttagcaatagggaatgggtttt |
72 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
10379 |
ataaggtctataatggggtttgataattcaagtttagtaatagggaatggatttt |
10433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 18140 - 18194
Alignment:
| Q |
18 |
ataaggtctataatggggtttgataattcaattttagcaatagggaatgggtttt |
72 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
18140 |
ataaggtctataatggggtttgataattcaagtttagtaatagggaatggatttt |
18194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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