View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13293_high_1 (Length: 552)
Name: NF13293_high_1
Description: NF13293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13293_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 10883653 - 10884179
Alignment:
| Q |
11 |
cacagacaaagatgacaggttctgagtgagagagatttgctgaagtggttctcaaggcacatccattcaattcactggtatttttcagtttgggccacct |
110 |
Q |
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| T |
10883653 |
cacagacaaagatgacaggttctgagtgagagagatttgctgaagtggttctcaaggcacatccattcaattcactggtatttttcagtttgggccacct |
10883752 |
T |
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| Q |
111 |
atatatacatcacaaacagtgtatactttaatatataccatgcattaatattatgccctgaaatccttgaccagcatatcaaatacatgaaacgctctac |
210 |
Q |
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| T |
10883753 |
atatatacatcacaaacagtatatactttaatatataccatgcattaatattatgccctgaaatccttttccagcatatcaaatacatgaaacgctctac |
10883852 |
T |
|
| Q |
211 |
taagctttaaactcaagaaagccacaaaccaaagatgcagtatgaaatatttgaccaaatatcataaaacacaaacaagttgtaaattttacaacagtgt |
310 |
Q |
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| T |
10883853 |
taagctttaaactcaagaaagccacaaaccaaagatgcagtatgaaatatttgaccaaatatcataaaacacaagcaagttgtaaattttacaacagtgt |
10883952 |
T |
|
| Q |
311 |
gactgagcagcacataataaaagtggaactttactagcacaggaactcttttgttcaacaagaagctttcagaatgtcgattacgaattccatataccaa |
410 |
Q |
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| T |
10883953 |
gactgagcagcacataataaaagtggaactttactagcacaggaactcttttgttcaacaagaagctttcagaatgtcgattacgaattccatataccaa |
10884052 |
T |
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| Q |
411 |
ctcaatttacttctgattaacaataacagcttggttccttaaagctaccttgatgatgggatagccttttatcttatatttgcaagaggctgatttcgct |
510 |
Q |
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| T |
10884053 |
ctcaatttacttctgattaacaataacagcttggttccttaaagctaccttgatgatgggatagccttttatcttatatttgcaagaggctgatttcgct |
10884152 |
T |
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| Q |
511 |
actcgaaactgtgaccatctaattaca |
537 |
Q |
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| T |
10884153 |
actcgaaactgtgaccatctaattaca |
10884179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 36643115 - 36643069
Alignment:
| Q |
46 |
tttgctgaagtggttctcaaggcacatccattcaattcactggtatt |
92 |
Q |
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| T |
36643115 |
tttgctgaagtggctctcaaggcacatccattcaattcactagtatt |
36643069 |
T |
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