View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_11 (Length: 599)
Name: NF13295_high_11
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 5231475 - 5230892
Alignment:
| Q |
1 |
atttacgtagtacacatgcgcctaagattacattaacnnnnnnnnnttaaactaagcttcaataaagtaacaattttggaccataatcttatcatgaact |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231475 |
atttacgtagtacacatgtgcctaagattacattaacaaaaaaaaatcaaactaagcttcaataaagtaacaattttggaccataatcttatcatgaact |
5231376 |
T |
|
| Q |
101 |
aagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231375 |
aagtcatagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaa |
5231276 |
T |
|
| Q |
201 |
atttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgtaactcaaaccatgaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
5231275 |
atttttcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttataactcaaaccatgaaac |
5231176 |
T |
|
| Q |
301 |
aatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcc |
400 |
Q |
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| T |
5231175 |
aatttaaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagttcc |
5231076 |
T |
|
| Q |
401 |
tccatggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatcagatcttagaagtattcacacaggatta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5231075 |
tccatggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatgagatcttagaagtattcacacaggatta |
5230976 |
T |
|
| Q |
501 |
atcaaatgtaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactga |
584 |
Q |
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| T |
5230975 |
atcaaatttaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactga |
5230892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
320 |
accatattcatcaataggagcatcataatcatagcttgt |
358 |
Q |
| |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 316 - 411
Target Start/End: Complemental strand, 17126716 - 17126621
Alignment:
| Q |
316 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
411 |
Q |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctccatggtact |
17126621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 411
Target Start/End: Original strand, 42988695 - 42988787
Alignment:
| Q |
319 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
411 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| |||||| || ||||| ||||||||| ||||||||||| |||| |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact |
42988787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
110 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaa |
209 |
Q |
| |
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||||||||||||||||||| |||| |||||| ||||| ||||| ||||| | ||||||| ||| ||||| ||||||||||||||||||| | | | |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
|
| Q |
210 |
atggctccattttggttcatttggaagtcctaatat |
245 |
Q |
| |
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||| | ||||||||||||| || ||||||| |||| |
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| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 317 - 411
Target Start/End: Complemental strand, 5452968 - 5452874
Alignment:
| Q |
317 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
411 |
Q |
| |
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|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| ||||| |||| |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact |
5452874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 52647440 - 52647347
Alignment:
| Q |
319 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
412 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||| | ||| || |||| | || || ||| |||||||| ||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta |
52647347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 22014418 - 22014515
Alignment:
| Q |
315 |
tgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
412 |
Q |
| |
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||||||||||| |||||||| || |||||||||||||| || || | ||| ||| | |||| | |||||||||||| ||||| |||||||||||||| |
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| T |
22014418 |
tgcataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtacta |
22014515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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