View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_high_13 (Length: 588)
Name: NF13295_high_13
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_13 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0287 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 13 - 583
Target Start/End: Original strand, 14378 - 14948
Alignment:
| Q |
13 |
acaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctgaggtcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14378 |
acaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctgaggtcaa |
14477 |
T |
|
| Q |
113 |
acaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaatt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14478 |
gcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaatt |
14577 |
T |
|
| Q |
213 |
gcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14578 |
gcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcag |
14677 |
T |
|
| Q |
313 |
atcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtcct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14678 |
atcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtcct |
14777 |
T |
|
| Q |
413 |
tcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaatt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14778 |
tcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaatt |
14877 |
T |
|
| Q |
513 |
gatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14878 |
gatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
14948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 13 - 583
Target Start/End: Complemental strand, 3631707 - 3631137
Alignment:
| Q |
13 |
acaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctgaggtcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631707 |
acaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctgaggtcaa |
3631608 |
T |
|
| Q |
113 |
acaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaatt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631607 |
gcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaatt |
3631508 |
T |
|
| Q |
213 |
gcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631507 |
gcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcag |
3631408 |
T |
|
| Q |
313 |
atcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtcct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3631407 |
atcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtcct |
3631308 |
T |
|
| Q |
413 |
tcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaatt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3631307 |
tcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaatt |
3631208 |
T |
|
| Q |
513 |
gatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattcttcg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3631207 |
gatctcaccaatgatcacatcaaatccgtccttatggtatgttccaaacactatttttattatattgttcg |
3631137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 556
Target Start/End: Complemental strand, 3621310 - 3620767
Alignment:
| Q |
13 |
acaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctgaggtcaa |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3621310 |
acaatgattgttggagagagataagaaaaatttgtgttgtccatttctttagctccaaaaaaatttctagctttgctcatgtgagaaaatctgaggtcaa |
3621211 |
T |
|
| Q |
113 |
acaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctctatagtatgtagaatt |
212 |
Q |
| |
|
| |||||||||||| ||||||| ||||||| ||| | |||| ||||||||||||||| || |||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
3621210 |
gctaatgattgaaaagatatctaaccatgtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttctattgtatgtagaatt |
3621111 |
T |
|
| Q |
213 |
gcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3621110 |
gcttttggaaaaagttatgagcatgaagggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcag |
3621011 |
T |
|
| Q |
313 |
atcatattccttttatggggtggattgataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtcct |
412 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3621010 |
attatattccttttatggggtgggttgataaactcacaggggcaattgctcgtgttgacaacactttcaaggctttggatgagttctttgaacaagtcct |
3620911 |
T |
|
| Q |
413 |
tcaagaacatctcaatcctaataatcggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaaaaatcagggtcgtctctcaatt |
512 |
Q |
| |
|
| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3620910 |
caaggaacatctcaatcctaataataggaaaaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaatt |
3620811 |
T |
|
| Q |
513 |
gatctcaccaatgatcacatcaaatccgtccttatggtatgttc |
556 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
3620810 |
gatctcaccaataatcacatcaaagccgtcgttatggtatgttc |
3620767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 9401208 - 9401162
Alignment:
| Q |
300 |
ttctttgtttcagatcatattccttttatggggtggattgataaact |
346 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
9401208 |
ttctttgtttctgattatattccatttatgggttggattgataaact |
9401162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University