View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_18 (Length: 545)
Name: NF13295_high_18
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Original strand, 2945785 - 2946297
Alignment:
| Q |
16 |
cacaagcatagacataaaaaacatgtggataatttgcaaaatattgatgataaccatcctgcacatcacaaacacagaaaggaacaggacccttctacag |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945785 |
cacaagcatagacatagaaaacatgtggataatttgcaaaatattgatgataaccatcctgcacatcacaaacacagaaaggaacaggacccttctacag |
2945884 |
T |
|
| Q |
116 |
gactgatcaaagatctgaggcatgataagataaggcatgcaaattatggaaaacacaaacaagttttggtatatgatcctggggctgagtagagaaagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2945885 |
gactgatcaaagatctgaggcatgataagataaggcatgcaaattatggaaaacacaaacaagttttggtatatgatcctggggctgagtagagaaagtt |
2945984 |
T |
|
| Q |
216 |
ccaattcaatgcagttagttatctcttagaaagtacaatgttttagattaactttgtacctacttcatagaatcataggtatatccttttatttgttatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2945985 |
ccaattcaatgcagttagttatctcttagaaagtacaatgttttagattaactttgtacctacttcatagaatcataggtatatctttttatttgttatt |
2946084 |
T |
|
| Q |
316 |
tcgtttccactagtcttcgttctccattttctagccctttttaatggagtgtggagggcaagaaatgaggaatggaagtcattgaacggtggatttagaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2946085 |
tcgtttccactagtcttcgttctccattttctagccctttttaatggagtgtggagggcaagaaatgaggaatggaagttattgaacggtggatttagaa |
2946184 |
T |
|
| Q |
416 |
tgtagcattgttgtcacgtgaaatatatctgtatggtaaatatataatctgaaacannnnnnnnnggtaatatataatttgaaacatttacactcttaca |
515 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2946185 |
tgtaacattgttgtcacgtgaaatatatctgtatagtaaatatataatctgaaacatttttttttggtaatatataatttgaaacatttacactcttaca |
2946284 |
T |
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| Q |
516 |
aagtgaaacttcc |
528 |
Q |
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||||||||||||| |
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| T |
2946285 |
aagtgaaacttcc |
2946297 |
T |
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