View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_24 (Length: 450)
Name: NF13295_high_24
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 21 - 440
Target Start/End: Original strand, 14458947 - 14459371
Alignment:
| Q |
21 |
atttggatcctctgcatgcaacaatgcaacaatattgtgtttaaccagaacataatattgatgtg---tgataacacttttttacatgaaaa-tat-gtc |
115 |
Q |
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| T |
14458947 |
atttggatcctctgcatgcaactatgcaacaatattttgtttaaccagaacataatattgatgtgaagtgataacactttttcacatgaaaaatattgtc |
14459046 |
T |
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| Q |
116 |
acactattgtagcaggggagaggattcaaattcatctatgagtgatgtgttagtactgtttatgattttatgtaatgatgaaatgaaataggatatataa |
215 |
Q |
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| T |
14459047 |
acactattgtagcaggggagaggattcaaattcatctatgagtgatgtgttagtactgtttatgattttatgtaatgatgaaatgaaataggatatataa |
14459146 |
T |
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| Q |
216 |
acttaggaataattcaatgcagtaaatacctcgaatattttattgcaccattcctcggactcattgttgagtaaatgacgcaaaatttgttgatgatgtg |
315 |
Q |
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| T |
14459147 |
acttaggaataattcaatgcagtaattacctcgaatattttattgcaccattcctcggactcattgttgagtaaatgacgcaaaatttgttgatgatgtg |
14459246 |
T |
|
| Q |
316 |
ttggttctgacataagttttcccttaccttcattatcttttattgctttcttatatgcatgccaccttatatgattctctgacttgtagaattttgcata |
415 |
Q |
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| T |
14459247 |
ttggttctgacataagttttcccttaccttcattatcttttattgctttcttatatgcatgccaccttatatgattctctgacttgtagaattttgcata |
14459346 |
T |
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| Q |
416 |
gtagaaaaattgtacttcacctatg |
440 |
Q |
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| T |
14459347 |
gtagaaaaattgtacttcacctatg |
14459371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 14467954 - 14468059
Alignment:
| Q |
44 |
atgcaacaatattgtgtttaaccagaacataatattgatgtgtgataacacttttttacatgaaaata---tgtcacactattgtagcaggggagaggat |
140 |
Q |
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| T |
14467954 |
atgcaacaatattttgtttaaccagaacataatattgatgtgtgataacacttttttacatgaaaatattttgtcacactgttgcaccatgggagaggat |
14468053 |
T |
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| Q |
141 |
tcaaat |
146 |
Q |
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|||||| |
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| T |
14468054 |
tcaaat |
14468059 |
T |
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