View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_high_36 (Length: 355)

Name: NF13295_high_36
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_high_36
NF13295_high_36
[»] scaffold0051 (1 HSPs)
scaffold0051 (36-123)||(62062-62149)
[»] chr6 (11 HSPs)
chr6 (36-123)||(4107954-4108041)
chr6 (36-123)||(28573828-28573915)
chr6 (36-123)||(6969295-6969382)
chr6 (43-125)||(34316948-34317031)
chr6 (36-112)||(9981259-9981335)
chr6 (36-123)||(15045546-15045633)
chr6 (36-123)||(25529241-25529328)
chr6 (49-123)||(1218518-1218592)
chr6 (49-123)||(24443927-24444001)
chr6 (53-101)||(4897511-4897559)
chr6 (49-123)||(18323835-18323909)
[»] chr4 (24 HSPs)
chr4 (36-123)||(12682755-12682842)
chr4 (36-118)||(46104184-46104266)
chr4 (36-123)||(2116089-2116176)
chr4 (53-111)||(35833430-35833488)
chr4 (36-123)||(3821198-3821285)
chr4 (36-103)||(5752471-5752538)
chr4 (36-119)||(15704115-15704198)
chr4 (36-123)||(35498532-35498619)
chr4 (36-123)||(39716717-39716804)
chr4 (36-121)||(13171627-13171712)
chr4 (36-123)||(3757726-3757813)
chr4 (36-123)||(50119957-50120044)
chr4 (53-107)||(8956932-8956986)
chr4 (53-107)||(8986904-8986958)
chr4 (53-107)||(37349802-37349856)
chr4 (53-123)||(51347488-51347558)
chr4 (70-127)||(47560252-47560309)
chr4 (56-123)||(24948306-24948373)
chr4 (53-107)||(9888906-9888960)
chr4 (36-93)||(17730463-17730520)
chr4 (36-93)||(30529278-30529335)
chr4 (53-101)||(24547353-24547401)
chr4 (53-101)||(29712392-29712440)
chr4 (49-101)||(52799047-52799099)
[»] chr3 (14 HSPs)
chr3 (36-123)||(26777850-26777937)
chr3 (39-123)||(4139350-4139434)
chr3 (36-118)||(53800504-53800586)
chr3 (36-123)||(8393563-8393650)
chr3 (36-124)||(19895645-19895733)
chr3 (36-103)||(18682509-18682576)
chr3 (36-101)||(22519211-22519276)
chr3 (78-123)||(39838225-39838270)
chr3 (59-123)||(11602187-11602251)
chr3 (36-101)||(19368941-19369006)
chr3 (36-121)||(28981817-28981902)
chr3 (36-123)||(29530561-29530648)
chr3 (53-101)||(26102167-26102215)
chr3 (53-101)||(35855226-35855274)
[»] chr5 (17 HSPs)
chr5 (123-205)||(31786128-31786210)
chr5 (36-123)||(34727334-34727422)
chr5 (37-118)||(12422345-12422426)
chr5 (36-123)||(3088031-3088118)
chr5 (36-124)||(33709813-33709901)
chr5 (229-283)||(31786235-31786289)
chr5 (36-123)||(25698717-25698804)
chr5 (36-123)||(30140502-30140589)
chr5 (53-107)||(6305466-6305520)
chr5 (53-123)||(36886985-36887055)
chr5 (49-123)||(41689275-41689349)
chr5 (53-125)||(42977849-42977918)
chr5 (53-107)||(43138563-43138617)
chr5 (36-101)||(30754431-30754496)
chr5 (53-107)||(754461-754515)
chr5 (53-123)||(17643402-17643472)
chr5 (49-87)||(34715632-34715670)
[»] chr7 (19 HSPs)
chr7 (36-123)||(49146122-49146210)
chr7 (36-123)||(4848348-4848436)
chr7 (36-123)||(688063-688150)
chr7 (53-123)||(46197416-46197487)
chr7 (36-125)||(39651148-39651237)
chr7 (36-101)||(11840447-11840512)
chr7 (36-101)||(21600970-21601035)
chr7 (36-123)||(9143473-9143563)
chr7 (36-123)||(39276613-39276700)
chr7 (53-125)||(29467749-29467821)
chr7 (36-118)||(29684113-29684195)
chr7 (49-101)||(17169046-17169098)
chr7 (49-109)||(31899998-31900058)
chr7 (36-123)||(21670792-21670879)
chr7 (53-107)||(24684650-24684704)
chr7 (53-123)||(44804520-44804590)
chr7 (49-123)||(48529946-48530020)
chr7 (48-117)||(42912138-42912207)
chr7 (53-93)||(35157012-35157052)
[»] chr8 (18 HSPs)
chr8 (36-123)||(4466420-4466507)
chr8 (36-118)||(7389203-7389285)
chr8 (36-118)||(25616497-25616580)
chr8 (36-123)||(25620714-25620801)
chr8 (36-114)||(41972965-41973043)
chr8 (43-123)||(19243235-19243315)
chr8 (43-123)||(19316419-19316499)
chr8 (53-101)||(40587709-40587757)
chr8 (36-123)||(36776404-36776491)
chr8 (43-118)||(45298259-45298334)
chr8 (53-107)||(8760717-8760771)
chr8 (36-126)||(18378802-18378892)
chr8 (53-107)||(25836282-25836336)
chr8 (36-101)||(25346056-25346121)
chr8 (36-121)||(40616094-40616179)
chr8 (36-123)||(24053914-24054001)
chr8 (53-107)||(1942805-1942859)
chr8 (53-107)||(8162792-8162846)
[»] chr1 (18 HSPs)
chr1 (36-123)||(47134704-47134791)
chr1 (36-117)||(5426222-5426303)
chr1 (36-123)||(16300389-16300476)
chr1 (53-123)||(38894755-38894825)
chr1 (36-123)||(52306069-52306156)
chr1 (49-123)||(1367291-1367365)
chr1 (55-125)||(41918924-41918994)
chr1 (54-123)||(19322362-19322431)
chr1 (53-125)||(33075673-33075745)
chr1 (53-121)||(43116050-43116118)
chr1 (49-123)||(4890098-4890172)
chr1 (49-123)||(17364616-17364690)
chr1 (49-123)||(29188313-29188387)
chr1 (49-123)||(33359700-33359774)
chr1 (36-101)||(46626324-46626389)
chr1 (53-123)||(1826793-1826863)
chr1 (53-123)||(22198924-22198994)
chr1 (53-107)||(28570741-28570795)
[»] scaffold0759 (1 HSPs)
scaffold0759 (36-123)||(5891-5978)
[»] chr2 (15 HSPs)
chr2 (36-123)||(28607221-28607308)
chr2 (123-205)||(32308508-32308587)
chr2 (36-123)||(10050189-10050276)
chr2 (230-284)||(32800467-32800521)
chr2 (123-205)||(32800545-32800628)
chr2 (53-123)||(32677200-32677270)
chr2 (49-122)||(9545788-9545861)
chr2 (49-101)||(2952779-2952831)
chr2 (36-123)||(24520866-24520953)
chr2 (36-117)||(19486111-19486192)
chr2 (36-101)||(19486211-19486276)
chr2 (53-101)||(17836989-17837037)
chr2 (39-119)||(18096495-18096575)
chr2 (49-123)||(4292795-4292869)
chr2 (36-123)||(10876571-10876656)
[»] scaffold0009 (1 HSPs)
scaffold0009 (39-123)||(225435-225519)
[»] scaffold0057 (1 HSPs)
scaffold0057 (49-123)||(20592-20666)
[»] scaffold0429 (1 HSPs)
scaffold0429 (43-123)||(12961-13040)
[»] scaffold0381 (1 HSPs)
scaffold0381 (53-107)||(9585-9639)
[»] scaffold0045 (1 HSPs)
scaffold0045 (71-121)||(18903-18953)
[»] scaffold0385 (1 HSPs)
scaffold0385 (53-101)||(8317-8365)


Alignment Details
Target: scaffold0051 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 62149 - 62062
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  62149 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 62062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 4108041 - 4107954
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4108041 ctcaaccaatttgtaatttaccaaattgcccctcataggggaaaaatggtaaaatcaatggacattaacttttatattagtatataga 4107954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 28573828 - 28573915
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  28573828 ctcaaccaatttgtaatttaccaaattgcccctcctaggggcaaaatggtaaaatcaaaggatattaacttttatatcagtatataga 28573915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 6969295 - 6969382
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  6969295 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaacttttatattagtatataga 6969382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 34317031 - 34316948
Alignment:
Q  43 aatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagt-atatagaag 125  Q
    |||| |||| ||||||||||||| ||| ||||||||||| |||||||||||||||||| |  |||||||||||| |||||||||    
T  34317031 aattagtaaattaccaaattgcccctcttaggggcaaaaaggtaaaatcaatggacatcactttttatattagtaatatagaag 34316948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 9981259 - 9981335
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatat 112  Q
    ||||||||||| | |||||||||||||||| || ||||||| ||||||||||| |||||| |||||  |||||||||    
T  9981259 ctcaaccaattagcaatttaccaaattgccccttataggggtaaaatggtaaattcaatgaacatttccttttatat 9981335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 15045546 - 15045633
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| |||||||||||||||||||| ||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  15045546 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatataga 15045633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 25529328 - 25529241
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||  ||||||||||||| || ||||| ||||||| |||||| ||| ||||||  | |||||||||||||||||||    
T  25529328 ctcaaccaattagtagattaccaaattgccccttataggagcaaaatcgtaaaagcaacggacatggatttttatattagtatataga 25529241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 1218592 - 1218518
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  1218592 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 1218518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 24444001 - 24443927
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| ||| |||   ||| |||| ||||||||||    
T  24444001 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtatataga 24443927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 4897511 - 4897559
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  4897511 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 4897559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 18323909 - 18323835
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||   | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  18323909 taatttaccaaattgcttttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 18323835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 12682755 - 12682842
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12682755 ctcaaccaatttataatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 12682842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 46104266 - 46104184
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46104266 ctcaaccaatttgtaatttaccaaattgcccctcattggggcaaaatggtaaaatcaatggacattaacttttatattagtat 46104184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 2116176 - 2116089
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||| ||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  2116176 ctcaaccaatttataatttaccaaattgcccctcctaaggacaaaatggtaaaatcaatggacattaacttttatattagtatataga 2116089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 35833430 - 35833488
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttata 111  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35833430 ttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaacttttata 35833488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 3821198 - 3821285
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||| ||||||||  ||| |||| ||||||||||    
T  3821198 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtatataga 3821285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 5752538 - 5752471
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaa 103  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||    
T  5752538 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaa 5752471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 15704198 - 15704115
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtata 119  Q
    ||||||||||| ||||||||||||||| || || ||||||||||||||||||| | || | ||||||  |||||||| ||||||    
T  15704198 ctcaaccaattagtaatttaccaaatttccccttataggggcaaaatggtaaatttaaagaacattactttttatataagtata 15704115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 35498532 - 35498619
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||||||||||| |  | |||||||||||||| |||| |||| || ||||   |||||||||||||||||||    
T  35498532 ctcaaccaattagtaatttaccaaattgtcctttataggggcaaaatgataaattcaagggccatttctttttatattagtatataga 35498619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 39716717 - 39716804
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||   ||||||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  39716717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 39716804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 13171712 - 13171627
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatata 121  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||| ||||||| | |||  ||||||||||||    
T  13171712 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatata 13171627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 3757813 - 3757726
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||||| |||||   |||  ||||||||||||||    
T  3757813 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaatgaacatttcttttcttattagtatataga 3757726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 50119957 - 50120044
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||| |||||||   |||  ||||||||||||||    
T  50119957 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacattccttttcttattagtatataga 50120044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 8956986 - 8956932
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  8956986 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 8956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 8986958 - 8986904
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  8986958 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 8986904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 37349856 - 37349802
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  37349856 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 37349802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 51347558 - 51347488
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||||   |||  ||||||||||||||    
T  51347558 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatataga 51347488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 47560252 - 47560309
Alignment:
Q  70 ataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaagaa 127  Q
    ||||||||||||||||||| |||| ||||||||  ||| |||| ||||||||||||||    
T  47560252 ataggggcaaaatggtaaattcaagggacattacttttaatataagtatatagaagaa 47560309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 24948306 - 24948373
Alignment:
Q  56 ccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||| || ||||| ||||||||||||| |||| |||||||   |||||||| ||||||||||    
T  24948306 ccaaattgccccttataggagcaaaatggtaaattcaaaggacatttctttttatataagtatataga 24948373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 9888906 - 9888960
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||| | || ||||||||||||||||||| |||  |||||||||||||    
T  9888906 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacattaacttt 9888960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 17730520 - 17730463
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaa 93  Q
    ||||||||||| |||  ||||||||||||| || ||||| ||||||||||||| ||||    
T  17730520 ctcaaccaattagtagattaccaaattgccccttataggagcaaaatggtaaattcaa 17730463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 30529278 - 30529335
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaa 93  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| ||||    
T  30529278 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaa 30529335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 24547401 - 24547353
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || |||||| |||||||||||| |||| |||||||    
T  24547401 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatt 24547353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 29712440 - 29712392
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || ||||||||||||||||||| | || |||||||    
T  29712440 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatt 29712392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 52799099 - 52799047
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||||||| || ||||||| ||||||||||| | || |||||||    
T  52799099 taatttaccaaattgcccctaataggggtaaaatggtaaatttaaaggacatt 52799047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 26777850 - 26777937
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26777850 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacgttaacttttatattagtatataga 26777937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 4139350 - 4139434
Alignment:
Q  39 aaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4139350 aaccaatttgtaatttaccaaattgcccctaatagggacaaaatggtaaaatcaatggacattaacttttatattagtatataga 4139434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 53800586 - 53800504
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    |||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  53800586 ctcaaccaatttgtaatttaccaaattgcccctcctaagggcaaaatggtaaaatcaatggacattaacttttatattagtat 53800504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 8393650 - 8393563
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  8393650 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatataga 8393563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 19895645 - 19895733
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaa 124  Q
    |||||||||||  |||||||||||||||||  | ||| ||||||||||||||| ||||||||||||  ||| ||||| |||||||||||    
T  19895645 ctcaaccaattactaatttaccaaattgccctttataagggcaaaatggtaaattcaatggacattttcttctatataagtatatagaa 19895733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 18682576 - 18682509
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaa 103  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||    
T  18682576 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattaa 18682509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 22519276 - 22519211
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    |||||||||||  |||||||| |||||||| || ||||||||||||||||||| ||||||||||||    
T  22519276 ctcaaccaattaataatttactaaattgccccttataggggcaaaatggtaaattcaatggacatt 22519211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 39838225 - 39838270
Alignment:
Q  78 aaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  39838225 aaaatggtaaaatcaacggacattaacttttatattagtatataga 39838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 11602187 - 11602251
Alignment:
Q  59 aattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||| || |||||||||||||||||||||||| ||||||  | |||||||||||||||||||    
T  11602187 aattgccccttataggggcaaaatggtaaaatcaacggacatggatttttatattagtatataga 11602251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 19368941 - 19369006
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||  |||  ||||||||||||| || |||||||||||||||||||||||| |||||||    
T  19368941 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaaatcaagggacatt 19369006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 28981817 - 28981902
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatata 121  Q
    ||||||||||| ||   ||||||||||||| || ||||||||||||||||||| |||| ||||||  | |||  ||||||||||||    
T  28981817 ctcaaccaattagttgattaccaaattgccccttataggggcaaaatggtaaattcaagggacatggattttcttattagtatata 28981902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 29530561 - 29530648
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||  |||  ||||||||||||| || |||||| |||||||||||| |||| |||||||   |||  ||||||||||||||    
T  29530561 ctcaaccaataagtagattaccaaattgccccttatagggacaaaatggtaaattcaagggacatttcttttcttattagtatataga 29530648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 26102167 - 26102215
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    |||||||||| || || ||||||||||||||||||| |||| |||||||    
T  26102167 ttaccaaattacctcttataggggcaaaatggtaaattcaaaggacatt 26102215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 35855274 - 35855226
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || ||||||||||||||||||| | || |||||||    
T  35855274 ttaccaaattgccccttataggggcaaaatggtaaatttaagggacatt 35855226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 31786128 - 31786210
Alignment:
Q  123 aagaacaggatgaaaatgatacttgttaaaaaagtgataaaaatgatgaagttgttgatagattttatgggtttatttatttt 205  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786128 aagaacaggatgaaaatgatgcttgttaaaaaagtgataaaaatgatgaagttgttgatagattttatgggtttatttatttt 31786210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 34727334 - 34727422
Alignment:
Q  36 ctcaaccaattt-gtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||| |||||||| ||||||||| ||  ||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  34727334 ctcaaccaattttgtaatttatcaaattgcctcttctaaagacaaaatggtaaaatcaatggacattaacttttatattagtatataga 34727422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 12422345 - 12422426
Alignment:
Q  37 tcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    |||||||||| |||  ||||||||||||| || |||||||||||||||||||||||| |||||| || ||||||||||||||    
T  12422345 tcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaaatcaaaggacatgaatttttatattagtat 12422426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 3088031 - 3088118
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||  ||||||||||||||||| || ||||||||||||||||||| |||| ||||||||  ||| |||| ||||||||||    
T  3088031 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaagggacattacttttaatataagtatataga 3088118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 33709813 - 33709901
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaa 124  Q
    |||||||||||  |||||||||||||||||  | ||||||| ||||||||||| |||| ||||||||| ||| |||| |||||||||||    
T  33709813 ctcaaccaattactaatttaccaaattgccctttataggggtaaaatggtaaattcaagggacattaattttaatataagtatatagaa 33709901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 31786235 - 31786289
Alignment:
Q  229 taagattatcacaagtggcttgccaactcattagttttgtaataaaaaatggaga 283  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  31786235 taagattatctcaagtggtttgccaactcatcagttttgtaataaaaaatggaga 31786289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 25698717 - 25698804
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||   ||||||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  25698717 ctcaaccaataattaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 25698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 30140589 - 30140502
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| ||||||||||||||| ||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  30140589 ctcaaccaattagtaatttaccaaattacccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 30140502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 6305466 - 6305520
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  6305466 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 6305520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 36886985 - 36887055
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||||   |||  ||||||||||||||    
T  36886985 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatataga 36887055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 41689349 - 41689275
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  41689349 taatttaccaaattgcccataataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 41689275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 42977849 - 42977918
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaag 125  Q
    ||||||||||||| || ||||||||||||||||||   |||||||||||  ||||||||| ||||||| ||||    
T  42977849 ttaccaaattgccccttataggggcaaaatggtaa---caatggacattttcttttatataagtatattgaag 42977918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 43138563 - 43138617
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  43138563 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 43138617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 30754496 - 30754431
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  30754496 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaaaggacatt 30754431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 754461 - 754515
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||| | || ||||||||||||||||||| |||  |||||||||||||    
T  754461 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacattaacttt 754515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 17643402 - 17643472
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || ||| |||||||||| |||| |||| ||||||| | |||  ||||||||||||||    
T  17643402 ttaccaaattgccccttataagggcaaaatgataaattcaagggacatttattttcttattagtatataga 17643472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 34715670 - 34715632
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaa 87  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  34715670 taatttaccaaattgcccctaataggggcaaaatggtaa 34715632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 49146122 - 49146210
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaac-ttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49146122 ctcaaccaatttgtaatttaccaaattgcccctcataggggcaaaatggtaaaatcaatggacattaactttttatattagtatataga 49146210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 4848436 - 4848348
Alignment:
Q  36 ctcaaccaattt-gtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4848436 ctcaaccaattttgtaatttaccaaattacccctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 4848348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 688150 - 688063
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  688150 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcaaaggacattaacttttatattagtatataga 688063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 46197487 - 46197416
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttata-ttagtatataga 123  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46197487 ttaccaaattgcctctcctaagggcaaaatggtaaaatcaatggacattaacttttatatttagtatataga 46197416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 39651148 - 39651237
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaag 125  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  39651148 ctcaaccaattagtaatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatagaag 39651237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 11840447 - 11840512
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    |||||||||||  ||||||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  11840447 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 11840512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 21600970 - 21601035
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    |||||||||||  ||||||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  21600970 ctcaaccaattaataatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 21601035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 9143563 - 9143473
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatta---acttttatattagtatataga 123  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||||||| |||| ||| ||||     |||||||||||||||||||    
T  9143563 ctcaacaaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaagggatattatttctttttatattagtatataga 9143473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 39276700 - 39276613
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| |||||||||||||||||||| ||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  39276700 ctcaacaaatttgtaatttaccaaattaccctttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatataga 39276613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 29467821 - 29467749
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaag 125  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  29467821 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagaag 29467749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 29684113 - 29684195
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    ||||||||||| |||  ||||||||||||| || ||||||| ||||||||||| |||| | |||||   ||||||||||||||    
T  29684113 ctcaaccaattagtagattaccaaattgccccttataggggtaaaatggtaaattcaaggcacatttctttttatattagtat 29684195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 17169098 - 17169046
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    |||||||||||||||||  | ||||||||||||||||||| |||| |||||||    
T  17169098 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatt 17169046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 31899998 - 31900058
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaactttta 109  Q
    |||| |||||||||||| || ||||||||||||| ||||| |||| |||||||| ||||||    
T  31899998 taatctaccaaattgcccctaataggggcaaaattgtaaattcaaaggacattacctttta 31900058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 21670792 - 21670879
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| ||||||||||||||||||||  |  | ||||||||||||| ||||| |||| |||||||   ||| |||| ||||||||||    
T  21670792 ctcaacaaatttgtaatttaccaaattatcctttataggggcaaaatagtaaattcaagggacatttcttttaatataagtatataga 21670879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 24684650 - 24684704
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || |||| |||||||||||||| |||  |||||||||||||    
T  24684650 ttaccaaattgccccttatagaggcaaaatggtaaattcatgggacattaacttt 24684704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 44804590 - 44804520
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || |||||| |||||||||||| |||| |||||||   |||  ||||||||||||||    
T  44804590 ttaccaaattgccccttatagggacaaaatggtaaattcaagggacatttcttttcttattagtatataga 44804520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 48529946 - 48530020
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||| |  ||||||||||||||||||  |||| |||||||   ||| |||| ||||||||||    
T  48529946 taatttaccaaattgcccccaataggggcaaaatggtaatttcaaaggacatttcttttaatataagtatataga 48530020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 42912207 - 42912138
Alignment:
Q  48 gtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagta 117  Q
    |||| ||| ||||||||| ||| || |||||||| |||||||||||||||||| |  ||||||| |||||    
T  42912207 gtaaattagcaaattgcccctcttaagggcaaaaaggtaaaatcaatggacatcactttttatactagta 42912138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 35157012 - 35157052
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaa 93  Q
    ||||||||||||| || ||||||||||||||||||| ||||    
T  35157012 ttaccaaattgccccttataggggcaaaatggtaaattcaa 35157052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 4466420 - 4466507
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4466420 ctcaaccaatttgtaatttaccaaattgcccctcctaagggtaaaatggtaaaatcaatggacattaacttttatattagtatataga 4466507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 7389285 - 7389203
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  7389285 ctcaaccaatttgtaatttaccaaattgcccctccttggggcaaaatggtaaaatcaatggacattaacttttatattagtat 7389203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 25616497 - 25616580
Alignment:
Q  36 ctcaaccaattt-gtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    |||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  25616497 ctcaaccaattttgtaatttaccaaattgcccctcttaagggcaaaatggtaaaatcaatggacattaacttttatattagtat 25616580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 25620714 - 25620801
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||    
T  25620714 ctcaactaatttgtaatttaccaaattgcccctcataggggcaaaatagtaaaatcaatggacatgaacttttatatcagtgtataga 25620801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 41973043 - 41972965
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatatta 114  Q
    ||||||||||| |||  ||||||||||||| || ||||||||||||||||||| |||| ||||||| | ||||||||||    
T  41973043 ctcaaccaattagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttaattttatatta 41972965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 19243315 - 19243235
Alignment:
Q  43 aatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||| |||| ||||||||||||| || | |||||||||| |||||||||||  ||||| |  |||||||||||||||||||    
T  19243315 aattagtaaattaccaaattgcccctaagaggggcaaaaaggtaaaatcaacagacatcactttttatattagtatataga 19243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 19316499 - 19316419
Alignment:
Q  43 aatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||| |||| ||||||||||||| || | |||||||||| |||||||||||  ||||| |  |||||||||||||||||||    
T  19316499 aattagtaaattaccaaattgcccctaagaggggcaaaaaggtaaaatcaacagacatcactttttatattagtatataga 19316419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 40587709 - 40587757
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  40587709 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatt 40587757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 36776491 - 36776404
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||| |||||||   |||  ||||||||||||||    
T  36776491 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttcttattagtatataga 36776404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 45298259 - 45298334
Alignment:
Q  43 aatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtat 118  Q
    |||| |||| ||||||||||||| ||| |||||| |||| ||||||||||||| |||| |  ||||||||||||||    
T  45298259 aattagtaaattaccaaattgcccctcttaggggtaaaaaggtaaaatcaatgtacatcattttttatattagtat 45298334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 8760771 - 8760717
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  8760771 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 8760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 18378802 - 18378892
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaaga 126  Q
    ||||||||||   ||||||||||||||||| || |||| ||||||||| |||| |||| |||||||   ||| |||| |||||||||||||    
T  18378802 ctcaaccaataattaatttaccaaattgcccctaatagaggcaaaatgataaattcaaaggacatttcttttaatataagtatatagaaga 18378892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 25836282 - 25836336
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||||||||    
T  25836282 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttt 25836336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 25346121 - 25346056
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||  |||  ||||||||||||| || |||| |||||||||||||| ||||||||||||    
T  25346121 ctcaaccaataagtagattaccaaattgccccttatagaggcaaaatggtaaattcaatggacatt 25346056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 40616094 - 40616179
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatata 121  Q
    ||||||||||| |||  ||||||||||||| || ||||| ||||||||||||| |||| ||||||  | |||  ||||||||||||    
T  40616094 ctcaaccaattagtagattaccaaattgcctcttataggagcaaaatggtaaattcaagggacatggattttcttattagtatata 40616179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 24054001 - 24053914
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||  |||  ||||||||||||| || ||||| ||||||||||||| |||| |||||||   |||  ||||||||||||||    
T  24054001 ctcaaccaataagtagattaccaaattgccccttataggagcaaaatggtaaattcaagggacatttcttttcttattagtatataga 24053914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 1942859 - 1942805
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||||| || |||| |||||||||||||| |||  |||||||||||||    
T  1942859 ttaccaaattgccccttatagaggcaaaatggtaaattcatgggacattaacttt 1942805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 8162792 - 8162846
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||| | || ||||||||||||||||||| |||  |||||||||||||    
T  8162792 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacattaacttt 8162846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 47134791 - 47134704
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  47134791 ctcaaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacattaccttttatataagtatataga 47134704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 5426303 - 5426222
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagta 117  Q
    |||||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||| |||||||||||    
T  5426303 ctcaaccaatttgtaatttaccaaattgccccttctaagggcaaaatggtaaaatcaatggacattaactgttatattagta 5426222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 16300476 - 16300389
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||||||||||||| || ||||| ||||||||||||| |||| ||||||||| ||| |||| ||||||||||    
T  16300476 ctcaaccaattagtaatttaccaaattgccccttataggagcaaaatggtaaattcaagggacattaattttaatataagtatataga 16300389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 38894825 - 38894755
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || ||||||||||||||||||| |||||||||||| |||||  ||||||||||||||    
T  38894825 ttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttactttcttattagtatataga 38894755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 52306156 - 52306069
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||| ||||||||| || ||||||||||||||||||| | || ||| |||   |||||||| ||||||||||    
T  52306156 ctcaaccaattagtaatttatcaaattgccccttataggggcaaaatggtaaattaaagggatatttctttttatataagtatataga 52306069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 1367365 - 1367291
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  1367365 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 1367291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 41918924 - 41918994
Alignment:
Q  55 accaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaag 125  Q
    ||||||||||| ||| |||||||||||| | ||| |||||||||||  | |||||||||||||||||||||    
T  41918924 accaaattgccactcctaggggcaaaattggaaattcaatggacatatatttttatattagtatatagaag 41918994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 19322362 - 19322431
Alignment:
Q  54 taccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||| || ||||||||||||||||||| |||| ||||||| | |||  ||||||||||||||    
T  19322362 taccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttcttattagtatataga 19322431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 33075673 - 33075745
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatagaag 125  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||||    
T  33075673 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttcttttaatataagtatatagaag 33075745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 43116118 - 43116050
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatata 121  Q
    ||||||||||||| ||| |||||||||||| | ||| |||||||||||  | |||||||||||||||||    
T  43116118 ttaccaaattgcccctcctaggggcaaaattggaaattcaatggacatgtatttttatattagtatata 43116050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 4890172 - 4890098
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||| || |||| |||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  4890172 taatttaccaaattgcccctaatagaggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 4890098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 17364616 - 17364690
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| ||| |||   ||| |||| ||||||||||    
T  17364616 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggatatttcttttaatataagtatataga 17364690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 29188313 - 29188387
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  29188313 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 29188387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 33359774 - 33359700
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||  | ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  33359774 taatttaccaaattgcccttaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 33359700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 46626324 - 46626389
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  46626324 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 46626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 1826863 - 1826793
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || |||| | |||||||||||| |||| ||||||||  ||| |||| ||||||||||    
T  1826863 ttaccaaattgccccttatagagccaaaatggtaaattcaagggacattacttttaatataagtatataga 1826793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 22198924 - 22198994
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || |||||||||||||| |||| |||| |||||||   ||| |||| ||||||||||    
T  22198924 ttaccaaattgccccttataggggcaaaatgataaattcaagggacatttcttttaatataagtatataga 22198994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 28570795 - 28570741
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||| | || ||||||||||||||||||| |||  |||||||||||||    
T  28570795 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacattaacttt 28570741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 5891 - 5978
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||| | ||||||||||||||||||||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  5891 ctcaacaattttgtaatttaccaaattgccccttataggggcaaaatggtaaattcatgggacattaacttttatattagtatataga 5978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 28607308 - 28607221
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||||||| | ||| |||| ||||||||||    
T  28607308 ctcaaccaatttgtaatttaccaaattgccccttatagggacaaaatggtaaattcaatggacatttattttaatataagtatataga 28607221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 32308508 - 32308587
Alignment:
Q  123 aagaacaggatgaaaatgatacttgttaaaaaagtgataaaaatgatgaagttgttgatagattttatgggtttatttatttt 205  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| ||||||| |||   |||||||||||||||| ||||||||    
T  32308508 aagaacatgatgaaaatgatgcttgttagaaaagtgataaaaaggatgaagatgt---tagattttatgggtttctttatttt 32308587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 10050189 - 10050276
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  10050189 ctcaaccaattagtaatttatcaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 10050276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 32800521 - 32800467
Alignment:
Q  230 aagattatcacaagtggcttgccaactcattagttttgtaataaaaaatggagag 284  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  32800521 aagattatctcaagtggcttgccaactcatcagttttttaataaaaaatggagag 32800467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 32800628 - 32800545
Alignment:
Q  123 aagaacaggatgaaaatgatacttgttaaa-aaagtgataaaaatgatgaagttgttgatagattttatgggtttatttatttt 205  Q
    ||||||| |||||||||||| ||||| |   |||||||| ||||| |||||| |||| ||||||||||||||||||||||||||    
T  32800628 aagaacatgatgaaaatgatgcttgtcattcaaagtgatgaaaataatgaagatgttcatagattttatgggtttatttatttt 32800545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 32677200 - 32677270
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||| || ||||||||||||||||||| |||| ||||||| | ||| |||| ||||||||||    
T  32677200 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatttattttaatataagtatataga 32677270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 9545788 - 9545861
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatatag 122  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| |||||||||    
T  9545788 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatatag 9545861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 2952831 - 2952779
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  2952831 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatt 2952779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 24520953 - 24520866
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||| |||||||||||||||||  || |||| ||||||||  |||| |||| |||||||   |||||||| ||||||||||    
T  24520953 ctcaaccaattagtaatttaccaaattgctccttatagaggcaaaattataaattcaagggacatttctttttatataagtatataga 24520866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 19486111 - 19486192
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagta 117  Q
    ||||||||||  |||  ||||||||||||| || |||||||||||||| |||| |||||||| |||  ||||||||| ||||    
T  19486111 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatgataaattcaatggatattttcttttatataagta 19486192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 19486276 - 19486211
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||  |||  ||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  19486276 ctcaaccaataagtagattaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 19486211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 17837037 - 17836989
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || ||||||||||||||||||| |||| |||||||    
T  17837037 ttaccaaattgccccttataggggcaaaatggtaaattcaagggacatt 17836989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 18096575 - 18096495
Alignment:
Q  39 aaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtata 119  Q
    ||||||||  |||||| ||||||| || || ||||||||||||||||||| |||| |||||||   |||||||| ||||||    
T  18096575 aaccaattaataatttgccaaattaccccttataggggcaaaatggtaaattcaaaggacatttctttttatataagtata 18096495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 4292795 - 4292869
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||||||||||||  | ||||| ||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  4292795 taatttaccaaattgcccttaataggagcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 4292869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 10876571 - 10876656
Alignment:
Q  36 ctcaaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||  |||  ||||||||||||| ||  |||||||||||||||||| |||| |||||||   |||  ||||||||||||||    
T  10876571 ctcaaccaataagtagattaccaaattgcccct--taggggcaaaatggtaaattcaagggacatttcttttcttattagtatataga 10876656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 225519 - 225435
Alignment:
Q  39 aaccaatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||   ||| |||| ||||||||||    
T  225519 aaccaattagtaatttaccaaattgccccttataggggcaaaatggtaaattcaatggacatttcttttaatataagtatataga 225435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 20592 - 20666
Alignment:
Q  49 taatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| |||||||   ||| |||| ||||||||||    
T  20592 taatttaccaaattgcccctaataggggcaaaatggtaaattcaaaggacatttcttttaatataagtatataga 20666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 13040 - 12961
Alignment:
Q  43 aatttgtaatttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttttatattagtatataga 123  Q
    |||| |||| ||||||||||||| ||| ||||||||||| |||||||||||| ||||| |  || ||||||||||||||||    
T  13040 aattagtaaattaccaaattgcccctcttaggggcaaaa-ggtaaaatcaattgacatcactttctatattagtatataga 12961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 9639 - 9585
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacattaacttt 107  Q
    ||||||||||| | || ||||||||||||||||||| |||  |||||||||||||    
T  9639 ttaccaaattgacccttataggggcaaaatggtaaattcatgggacattaacttt 9585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 18903 - 18953
Alignment:
Q  71 taggggcaaaatggtaaaatcaatggacattaacttttatattagtatata 121  Q
    ||||||||||||| ||||||||||||||||  | ||||||| |||||||||    
T  18903 taggggcaaaatgataaaatcaatggacatgtatttttataatagtatata 18953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 8317 - 8365
Alignment:
Q  53 ttaccaaattgccgctcataggggcaaaatggtaaaatcaatggacatt 101  Q
    ||||||||||||| || ||||||||||||||||||| |||  |||||||    
T  8317 ttaccaaattgccccttataggggcaaaatggtaaattcatgggacatt 8365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University