View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_high_43 (Length: 320)

Name: NF13295_high_43
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_high_43
NF13295_high_43
[»] chr5 (1 HSPs)
chr5 (4-302)||(7562619-7562917)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 7562619 - 7562917
Alignment:
Q  4 gtgagaagaaaataaaggaataggaacaatgtcttcccctcctgattctgataactcttcttcgacgccttcagattctccaccagaagagtcaccacaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7562619 gtgagaagaaaataaaggaataggaacaatgtcttcccctcctgattctgataactcttcttcgacgccttcagattctccaccagaagagtcaccacaa 7562718  T
Q  104 tcaccaccaccatcaccaccttcagattcccagccgtctccttcaggatcaccgccaccgccaccaccttcaggatcacaaccttctcctccaccaccta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7562719 tcaccaccaccatcaccaccttcagattcccagccgtctccttcaggatcaccgccaccgccaccaccttcaggatcacaaccttctcctccaccaccta 7562818  T
Q  204 catcaaacaaaccatcaccaccatcccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatccggaaatt 302  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7562819 catcaaacaaaccatccccaccatcccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatctggaaatt 7562917  T

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