View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_44 (Length: 310)
Name: NF13295_high_44
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 49128818 - 49129095
Alignment:
| Q |
18 |
ggagggataatgtccaaataccgctctatattttagttgaaaatcactacacagttgtatctgtccggagagacaagtcaacaaggttctccctactagt |
117 |
Q |
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| T |
49128818 |
ggagggataatgtccaaataccgctctatattttagttgaaaatcactacacagttgtatctatccggaga--caagtcaacaaggttctcccgactagt |
49128915 |
T |
|
| Q |
118 |
ttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaaaat |
217 |
Q |
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| T |
49128916 |
ttcttgaaaacacctacttgagaatgcgatcaaactaaatgtggatgggagatctattggtaacctaagtcgttctgattattgtggtcttcttaaaaat |
49129015 |
T |
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| Q |
218 |
tcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactatgt |
297 |
Q |
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| T |
49129016 |
tcgttagggggttggatttttggctttttccaaagtttgtgattttacatctaatattaatgttgagtttcagactatgt |
49129095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 52246131 - 52246196
Alignment:
| Q |
220 |
gttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagctt |
287 |
Q |
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| T |
52246131 |
gttagggggttggatttt-ggctttttcagaagtt-gttattttacgtctaatattaatgtcgagctt |
52246196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 295
Target Start/End: Original strand, 41415325 - 41415506
Alignment:
| Q |
112 |
actagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttctt |
211 |
Q |
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| T |
41415325 |
actagtttcttggaaacaaccacatgagaatgtgatcaaacttaatgtggatgggagctctaatggtaacc-aggtcattctgcttatggtggtcttcta |
41415423 |
T |
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| Q |
212 |
aaaaattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagcttcagactat |
295 |
Q |
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| T |
41415424 |
tggaattcgtcaaggggttggatttttggcttttctggaag-ttatggttttaagtctaatattaatgtcgagcttcaggctat |
41415506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 9852430 - 9852372
Alignment:
| Q |
172 |
tattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggggtt |
230 |
Q |
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| T |
9852430 |
tattggtaatctaaatcgttctggttatggtggtcttcttaaaaatttgttagggggtt |
9852372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 285
Target Start/End: Complemental strand, 39125663 - 39125486
Alignment:
| Q |
107 |
tccctactagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtc |
206 |
Q |
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|||| ||||||||||| |||||||| || ||||||| ||||||||||||||| |||||||| |||||| |||| | ||||||||| |||| | ||| |
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| T |
39125663 |
tcccgactagtttcttagaaacacccacctgagaatatgatcaaactcaatgtagatgggagttctattagtaactcaggtcgttctggttatggcagtc |
39125564 |
T |
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| Q |
207 |
ttcttaaaaattcgttagggggttggatttttggctttttccaaagtttgtgattttacgtctaatattaatgttgagc |
285 |
Q |
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| T |
39125563 |
ttcttaggaattcgtcaagggattggatatttgac-ttttccgaacgttgtggttttacatctaatattaatgttgagc |
39125486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 39147260 - 39147329
Alignment:
| Q |
112 |
actagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataac |
181 |
Q |
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| T |
39147260 |
actagttccttggaaacacccacatgagaatgtgatcaaaatcaatgtggatgagagctctattggtaac |
39147329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 29978964 - 29978866
Alignment:
| Q |
114 |
tagtttcttggaaacacctacttgagaatgcgatcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttctta |
212 |
Q |
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| T |
29978964 |
tagtttcttggaaactcccacataagattgtgaagaaactcaatgtgcatgggagctctattggtaaccctagtcgttctggttatggtggtcttctta |
29978866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 40636114 - 40636012
Alignment:
| Q |
147 |
tcaaactcaatgtggatgggaggtctattgataacctaagtcgttctgattattgtggtcttcttaaaaattcgttagggg---gttggatttttggctt |
243 |
Q |
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||||| |||||||||||| ||| | ||||| |||| || ||| || || ||||||| ||||||||| |||||||||||||| | |||||||||||||| |
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| T |
40636114 |
tcaaaatcaatgtggatgagagctttattggtaacatatgtccttttggttattgtagtcttcttagaaattcgttaggggggtggtggatttttggctt |
40636015 |
T |
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| Q |
244 |
ttt |
246 |
Q |
| |
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||| |
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| T |
40636014 |
ttt |
40636012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 33279913 - 33279965
Alignment:
| Q |
186 |
gtcgttctgattattgtggtcttcttaaaaattcgttagggggttggattttt |
238 |
Q |
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|||| |||| |||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
33279913 |
gtcgatctggttatggtggtcttcttaggaattcgttagggggttgaattttt |
33279965 |
T |
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