View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_46 (Length: 300)
Name: NF13295_high_46
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 9660786 - 9661060
Alignment:
| Q |
6 |
tctgaatgctttttactatttgtgttgcacctcagaatgttatcaaagtcatgtattttgttgatagatatcgaatgactcacatcatgatttttgacaa |
105 |
Q |
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| T |
9660786 |
tctgaatgctttttactatttgtgttgcacctcagaatgttatcaaagtcatgtattttgttgatagatatcgaatgactcacatcatgatttt-gacaa |
9660884 |
T |
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| Q |
106 |
gtcagaaactcgaaacctcaatcattcgatctttataaacaactgagatcactaattgcagggaacttgttttccacaactttcaattcggattctcagc |
205 |
Q |
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| T |
9660885 |
gtcagaaactcgaaacctcaatcattcgatctttataaacaactgagatcactaattgcagggaacttgttttccacaactttcaattcggattctcagc |
9660984 |
T |
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| Q |
206 |
agtcaaaaatccttattgtcgtcgcggattctcagcagtcaaaattccttattgtcgtcgcagtcagtctatctaa |
281 |
Q |
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| T |
9660985 |
agtcaaaaatccttattgtcgtcgcggattctcagcagtcaaaattccttattgtcgtcgcagtcagtctatctaa |
9661060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 9676353 - 9676534
Alignment:
| Q |
6 |
tctgaatgctttttactatttgtgttgcacctcagaatgttatcaaagtcatgtattttgttgatagatatcgaatgactcacatcatgatttttgacaa |
105 |
Q |
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| T |
9676353 |
tctgaatgctttttactatttgtgttgcacctcagaatgttatcaaaatcatgtattttgttgatagatatcgaatgactcacatcatga-ctttgacca |
9676451 |
T |
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| Q |
106 |
gtcagaaactcgaaacctcaatcattcgatctttataaacaactgagatcactaattgcagggaacttgttttccacaacttt |
188 |
Q |
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| T |
9676452 |
atcagaaacttgaaatctcaatcattcaatctatataaacaattgagataactaattgcagggaactctttttccacaacttt |
9676534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 12107306 - 12107443
Alignment:
| Q |
6 |
tctgaatgctttttactatttgtgttgcacctcagaatgttatcaaagtcatgtattttgttgatagatatcgaatgactcacatcatgatttttgacaa |
105 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12107306 |
tctgaatgctttttactatt-gtgttgcacctcagaatgatatcaaagtcatgtattttgttgatagatatcgaatgactcacatcatga-ttttgacaa |
12107403 |
T |
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| Q |
106 |
gtcagaaactcgaaacctcaatcattcgatctttataaac |
145 |
Q |
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| T |
12107404 |
gtgacaaactcgaaacctcaatcattcaatctttataaac |
12107443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 9677890 - 9678036
Alignment:
| Q |
41 |
aatgttatcaaagtcatgtattttgttgatagatatcgaatgactcacatcatgatttttgacaagtcagaaactcgaaacctcaatcattcgatcttta |
140 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||| || ||||||| || ||||||||||||||||||| |
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| T |
9677890 |
aatgttatcaaagtcatgtattttgttaatagatatcgaatgactcgcatcatgactttgaccaa--caaaaactcgtaatctcaatcattcgatcttta |
9677987 |
T |
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| Q |
141 |
taaacaactgagatcactaattgcagggaacttgttttccacaactttcaat |
192 |
Q |
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||||| ||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
9677988 |
taaac---tgagatcactaattgcaaggaactcgttttccacaactttcaat |
9678036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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