View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_high_52 (Length: 270)
Name: NF13295_high_52
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 41357731 - 41357980
Alignment:
| Q |
18 |
attcaatagagaatccaattaattagtgcagaaaaaattaaaatagagaatcaagaacgatagattgtgttgcctttgtatgtctgtttattggtctaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41357731 |
attcaatagagaatccaattaattagtgcagaaaaaattaaaatagagaatcaagaacgatagattgtgttgcctttgtatgtctgtttattggtctaaa |
41357830 |
T |
|
| Q |
118 |
gtttgggtagtacgtaaaaagagaaacaatttgtgaaaggaaaaatgagaagccaagttgtttaggatggaataagctagaggaaccttgttgataaatt |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41357831 |
gtttgggtagcacgtaaaaagagaaacaatttgtg-aaggaaaaatgagaagcgaagttgtttaggatggaataagctagaggaaccttgttgataaatt |
41357929 |
T |
|
| Q |
218 |
aattcaagtatcttatagtttacnnnnnnnnnccttttaattttacctttg |
268 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41357930 |
aattcaagtatcttatagtttactttttttttccttttaattttacctttg |
41357980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University