View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_53 (Length: 267)
Name: NF13295_high_53
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 8137951 - 8138029
Alignment:
| Q |
15 |
acttcttgatgctgtggccatgttcctgtcgtagagacataatatcttgatgttactgccctatattgcaatctttgat |
93 |
Q |
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| T |
8137951 |
acttcttgatgctgtggccatgttcctgtcgtagagacataatatcttgatgttactgccctatattgcaatctttgat |
8138029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 8138041 - 8138085
Alignment:
| Q |
112 |
aaaaaagataaaaggaatatattaaaaaatgattagaaccattca |
156 |
Q |
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| T |
8138041 |
aaagaagataaaaggaatatattaaaaaatgataagaaccattca |
8138085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 267
Target Start/End: Original strand, 8138089 - 8138128
Alignment:
| Q |
228 |
aaaaaagctaacaaaacggattagaccataaaaaattaaa |
267 |
Q |
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| T |
8138089 |
aaaaaggctaacaaaacggattaaaccataaaaaattaaa |
8138128 |
T |
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