View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_66 (Length: 237)
Name: NF13295_high_66
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 49290011 - 49289807
Alignment:
| Q |
15 |
tcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290011 |
tcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcat |
49289912 |
T |
|
| Q |
115 |
atactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289911 |
atactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaac |
49289812 |
T |
|
| Q |
215 |
catct |
219 |
Q |
| |
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||||| |
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|
| T |
49289811 |
catct |
49289807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 49296962 - 49296758
Alignment:
| Q |
15 |
tcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296962 |
tcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcat |
49296863 |
T |
|
| Q |
115 |
atactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296862 |
atactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaac |
49296763 |
T |
|
| Q |
215 |
catct |
219 |
Q |
| |
|
||||| |
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|
| T |
49296762 |
catct |
49296758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 49303692 - 49303488
Alignment:
| Q |
15 |
tcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303692 |
tcaccaccaatgaaaacagttggaacagatggagaagaaccaagtcttgaaataagtgcttgttcaatctctctccctcttggtatctcatcaagttcat |
49303593 |
T |
|
| Q |
115 |
atactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303592 |
atactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcaccactggcctttctgaaac |
49303493 |
T |
|
| Q |
215 |
catct |
219 |
Q |
| |
|
||||| |
|
|
| T |
49303492 |
catct |
49303488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 211
Target Start/End: Original strand, 6567970 - 6568113
Alignment:
| Q |
68 |
aagtgcttgttcaatctctctccctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactc |
167 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| | |
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| T |
6567970 |
aagtgcttgttcaatgtctctccctccactcatctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacac |
6568069 |
T |
|
| Q |
168 |
atgcaacatgaactcttgctgaatatcaccactggcctttctga |
211 |
Q |
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|||||||| ||||||||||||||||||||||| ||| ||||| |
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| T |
6568070 |
atgcaacaactactcttgctgaatatcaccactgacctctctga |
6568113 |
T |
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