View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_high_72 (Length: 212)
Name: NF13295_high_72
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_high_72 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 16876360 - 16876188
Alignment:
| Q |
25 |
ttttgcgacgattgaaacattttattttttagcgtataaaatcaaaattcgatatatctacatgaatnnnnnnncttatctaacccttatatatttgaca |
124 |
Q |
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| T |
16876360 |
ttttgcgacgattgaaacattttattttttagcgtataaaatcaaaattcgatatatctacatgaataaaaaa-cttatttaacccttatatatttgacg |
16876262 |
T |
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| Q |
125 |
ccgaactttgatcttaaaaaatcatttatcttactacaataagagatatatttttcgttcataattgttataac |
198 |
Q |
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| T |
16876261 |
ccgaactttgatcttaaaaaatcatttatcttactacaataagagatatatttttcgttcataattgttataac |
16876188 |
T |
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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 16882382 - 16882287
Alignment:
| Q |
103 |
tctaacccttatatatttgacaccgaactttgatcttaaaaaatcatttatcttactacaataagagatatatttttcgttcataattgttataac |
198 |
Q |
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| T |
16882382 |
tctaacccttatatatttgacaccgaactttgatgttaaaaaatcatttatcttactacaataagagatatattttttgttcataattgttataac |
16882287 |
T |
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