View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_high_75 (Length: 204)

Name: NF13295_high_75
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_high_75
NF13295_high_75
[»] chr1 (49 HSPs)
chr1 (12-204)||(40419685-40419877)
chr1 (18-204)||(28528401-28528587)
chr1 (18-204)||(26016483-26016669)
chr1 (41-204)||(50771629-50771791)
chr1 (35-204)||(10272305-10272473)
chr1 (26-202)||(27637689-27637867)
chr1 (38-193)||(43898288-43898444)
chr1 (18-130)||(51584864-51584976)
chr1 (18-129)||(7083011-7083122)
chr1 (35-204)||(12261780-12261949)
chr1 (57-204)||(42501154-42501301)
chr1 (137-202)||(29807914-29807979)
chr1 (48-204)||(37263377-37263532)
chr1 (110-204)||(23791786-23791880)
chr1 (104-201)||(39422179-39422276)
chr1 (40-201)||(52442600-52442761)
chr1 (18-204)||(15577467-15577650)
chr1 (57-204)||(853874-854021)
chr1 (137-204)||(17640222-17640289)
chr1 (18-180)||(6641181-6641343)
chr1 (59-204)||(3818947-3819092)
chr1 (12-61)||(14224274-14224323)
chr1 (25-126)||(19969269-19969370)
chr1 (72-204)||(48431510-48431642)
chr1 (57-204)||(30834066-30834213)
chr1 (98-204)||(5338770-5338876)
chr1 (17-67)||(37263540-37263590)
chr1 (18-204)||(38868928-38869114)
chr1 (23-204)||(8796255-8796436)
chr1 (135-196)||(46388430-46388491)
chr1 (135-196)||(46394874-46394935)
chr1 (60-204)||(32404618-32404762)
chr1 (104-204)||(43423765-43423865)
chr1 (18-169)||(50806750-50806899)
chr1 (141-204)||(10569240-10569303)
chr1 (143-202)||(19908214-19908273)
chr1 (142-204)||(27704056-27704116)
chr1 (57-204)||(40416417-40416564)
chr1 (57-160)||(52561678-52561781)
chr1 (142-204)||(2544645-2544707)
chr1 (141-175)||(43954268-43954302)
chr1 (135-204)||(4590694-4590763)
chr1 (18-95)||(13578952-13579028)
chr1 (99-204)||(13827701-13827806)
chr1 (145-198)||(43375764-43375817)
chr1 (144-204)||(990635-990695)
chr1 (142-194)||(19969367-19969419)
chr1 (44-196)||(36339880-36340031)
chr1 (23-95)||(52532671-52532743)
[»] chr8 (21 HSPs)
chr8 (26-181)||(7531702-7531857)
chr8 (25-204)||(32043636-32043815)
chr8 (18-204)||(39953314-39953500)
chr8 (26-128)||(30812874-30812976)
chr8 (25-204)||(16351424-16351602)
chr8 (76-178)||(38409130-38409232)
chr8 (57-204)||(10079996-10080143)
chr8 (23-204)||(29520696-29520876)
chr8 (104-204)||(25985736-25985836)
chr8 (23-204)||(35914656-35914837)
chr8 (24-94)||(38901875-38901945)
chr8 (26-115)||(26685977-26686066)
chr8 (71-190)||(25985578-25985697)
chr8 (57-204)||(30559739-30559886)
chr8 (57-187)||(38178349-38178479)
chr8 (18-110)||(30456344-30456436)
chr8 (37-107)||(541433-541503)
chr8 (104-204)||(29700322-29700422)
chr8 (144-204)||(41971954-41972014)
chr8 (61-192)||(38391986-38392117)
chr8 (141-186)||(45331741-45331786)
[»] chr2 (27 HSPs)
chr2 (17-204)||(44437770-44437957)
chr2 (18-204)||(42543281-42543467)
chr2 (23-148)||(4598617-4598742)
chr2 (27-204)||(33594332-33594508)
chr2 (18-130)||(12489852-12489964)
chr2 (35-204)||(37481684-37481853)
chr2 (26-162)||(5759053-5759189)
chr2 (18-85)||(12470947-12471014)
chr2 (35-196)||(19235051-19235212)
chr2 (26-95)||(28960269-28960338)
chr2 (57-204)||(38434998-38435145)
chr2 (98-203)||(23714391-23714496)
chr2 (98-203)||(24102063-24102168)
chr2 (57-202)||(43832146-43832291)
chr2 (59-203)||(26784431-26784575)
chr2 (142-204)||(3481187-3481249)
chr2 (57-191)||(37470222-37470356)
chr2 (57-202)||(43752036-43752181)
chr2 (85-204)||(12141590-12141709)
chr2 (154-204)||(13240931-13240981)
chr2 (142-204)||(45077801-45077863)
chr2 (141-200)||(42092567-42092626)
chr2 (51-177)||(7293675-7293801)
chr2 (142-204)||(7825406-7825468)
chr2 (18-64)||(29968661-29968707)
chr2 (57-130)||(26670888-26670961)
chr2 (72-161)||(33504312-33504401)
[»] chr4 (45 HSPs)
chr4 (27-204)||(31897487-31897664)
chr4 (35-204)||(46372070-46372239)
chr4 (18-204)||(31961316-31961502)
chr4 (18-204)||(42285753-42285936)
chr4 (18-204)||(17900526-17900712)
chr4 (30-204)||(10209080-10209256)
chr4 (35-204)||(51550316-51550484)
chr4 (18-204)||(35555700-35555883)
chr4 (23-179)||(6478738-6478894)
chr4 (58-204)||(26356665-26356811)
chr4 (18-198)||(2589124-2589304)
chr4 (142-200)||(46715546-46715604)
chr4 (57-179)||(47147444-47147566)
chr4 (18-203)||(44360133-44360318)
chr4 (120-204)||(2589036-2589120)
chr4 (142-204)||(28497535-28497597)
chr4 (18-82)||(50869930-50869994)
chr4 (30-83)||(10775531-10775584)
chr4 (140-200)||(51252633-51252693)
chr4 (57-192)||(28351617-28351752)
chr4 (19-204)||(33709970-33710158)
chr4 (23-204)||(42639075-42639256)
chr4 (57-198)||(50680792-50680933)
chr4 (155-204)||(54470253-54470302)
chr4 (112-204)||(25257725-25257817)
chr4 (35-75)||(35622743-35622783)
chr4 (26-85)||(6318836-6318895)
chr4 (18-69)||(13262393-13262444)
chr4 (18-65)||(36556810-36556857)
chr4 (142-204)||(34233198-34233260)
chr4 (122-204)||(50471572-50471654)
chr4 (87-204)||(13805384-13805501)
chr4 (89-204)||(1427405-1427520)
chr4 (152-195)||(44719532-44719575)
chr4 (57-175)||(21945727-21945845)
chr4 (154-204)||(31339582-31339632)
chr4 (112-150)||(36557185-36557223)
chr4 (57-115)||(49738639-49738697)
chr4 (155-204)||(21214767-21214816)
chr4 (26-95)||(26024908-26024977)
chr4 (143-204)||(53518495-53518556)
chr4 (85-203)||(21107035-21107157)
chr4 (35-79)||(25257661-25257705)
chr4 (172-204)||(38570951-38570983)
chr4 (112-204)||(47372697-47372789)
[»] chr5 (36 HSPs)
chr5 (18-201)||(1525693-1525876)
chr5 (49-204)||(2712990-2713145)
chr5 (35-204)||(21952403-21952570)
chr5 (28-198)||(34734454-34734628)
chr5 (25-204)||(31635977-31636156)
chr5 (18-159)||(11002471-11002612)
chr5 (23-204)||(14749353-14749534)
chr5 (35-197)||(21915934-21916095)
chr5 (62-204)||(38578615-38578757)
chr5 (18-130)||(33667555-33667667)
chr5 (27-94)||(37065632-37065699)
chr5 (40-204)||(10082817-10082975)
chr5 (26-95)||(1935277-1935346)
chr5 (17-95)||(1174644-1174722)
chr5 (57-202)||(14667819-14667964)
chr5 (18-91)||(28411835-28411908)
chr5 (18-85)||(3442921-3442988)
chr5 (57-204)||(42199332-42199479)
chr5 (42-92)||(16134045-16134095)
chr5 (142-198)||(7359434-7359490)
chr5 (104-204)||(16134289-16134388)
chr5 (85-204)||(15489609-15489728)
chr5 (57-191)||(6788126-6788260)
chr5 (123-203)||(21093799-21093879)
chr5 (158-202)||(36123382-36123426)
chr5 (141-204)||(4460254-4460317)
chr5 (169-204)||(33667262-33667297)
chr5 (22-197)||(38684533-38684708)
chr5 (57-204)||(43475286-43475432)
chr5 (57-203)||(7678530-7678671)
chr5 (59-169)||(12576951-12577061)
chr5 (35-93)||(17213231-17213289)
chr5 (23-204)||(6889039-6889220)
chr5 (120-204)||(6368052-6368136)
chr5 (55-147)||(15369884-15369975)
chr5 (166-202)||(37065577-37065613)
[»] chr7 (28 HSPs)
chr7 (35-204)||(36514275-36514443)
chr7 (18-204)||(5335966-5336150)
chr7 (53-204)||(18605231-18605382)
chr7 (18-130)||(34745867-34745979)
chr7 (53-204)||(18637608-18637759)
chr7 (53-204)||(18651042-18651193)
chr7 (18-196)||(48735951-48736127)
chr7 (23-95)||(45558485-45558557)
chr7 (57-204)||(28628022-28628169)
chr7 (35-203)||(1569063-1569231)
chr7 (19-83)||(25578027-25578091)
chr7 (18-152)||(19119474-19119607)
chr7 (85-204)||(6420607-6420726)
chr7 (142-203)||(39812004-39812065)
chr7 (29-202)||(14593813-14593973)
chr7 (59-115)||(40830337-40830393)
chr7 (115-204)||(43791587-43791677)
chr7 (86-204)||(47848720-47848838)
chr7 (135-204)||(35713741-35713810)
chr7 (124-204)||(1740847-1740927)
chr7 (26-129)||(45601597-45601700)
chr7 (145-204)||(48202879-48202938)
chr7 (142-204)||(25579251-25579313)
chr7 (57-191)||(28562455-28562589)
chr7 (144-204)||(30633014-30633071)
chr7 (154-204)||(42187516-42187566)
chr7 (143-204)||(19262609-19262669)
chr7 (104-204)||(36101901-36102001)
[»] chr6 (16 HSPs)
chr6 (18-204)||(10617284-10617468)
chr6 (18-178)||(7513439-7513600)
chr6 (39-130)||(38883-38974)
chr6 (38-140)||(14315070-14315171)
chr6 (57-204)||(9593797-9593942)
chr6 (57-195)||(6906917-6907054)
chr6 (23-171)||(8364635-8364783)
chr6 (120-204)||(32913414-32913498)
chr6 (57-190)||(31818591-31818724)
chr6 (146-204)||(6293564-6293622)
chr6 (23-140)||(34560-34677)
chr6 (142-203)||(579465-579526)
chr6 (142-203)||(5897524-5897585)
chr6 (152-200)||(5053577-5053625)
chr6 (124-204)||(14389324-14389404)
chr6 (60-160)||(35199714-35199814)
[»] chr3 (25 HSPs)
chr3 (26-204)||(11581490-11581668)
chr3 (23-204)||(31454280-31454463)
chr3 (29-204)||(37351453-37351628)
chr3 (63-164)||(43254977-43255078)
chr3 (41-199)||(26990259-26990422)
chr3 (18-126)||(27893213-27893321)
chr3 (57-204)||(21200594-21200741)
chr3 (57-204)||(39600770-39600917)
chr3 (18-65)||(3987519-3987566)
chr3 (57-204)||(45289180-45289327)
chr3 (18-115)||(31453011-31453108)
chr3 (23-204)||(48508281-48508462)
chr3 (57-189)||(23534659-23534791)
chr3 (57-204)||(39235184-39235331)
chr3 (145-204)||(50249433-50249492)
chr3 (23-189)||(42510071-42510237)
chr3 (143-204)||(7278506-7278567)
chr3 (87-204)||(31261061-31261177)
chr3 (132-204)||(19737043-19737115)
chr3 (132-204)||(19757946-19758018)
chr3 (104-184)||(22902864-22902944)
chr3 (142-202)||(46568154-46568214)
chr3 (112-150)||(3987126-3987164)
chr3 (123-201)||(36304027-36304105)
chr3 (135-196)||(44443371-44443432)
[»] scaffold1609 (1 HSPs)
scaffold1609 (74-192)||(1059-1178)
[»] scaffold0018 (1 HSPs)
scaffold0018 (117-204)||(44017-44104)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-95)||(163244-163320)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 40419877 - 40419685
Alignment:
Q  12 atgaataaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctat 111  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40419877 atgaataaacgacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatctctagatccttcataatagtttcttgtatagattttctat 40419778  T
Q  112 gtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40419777 gtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 40419685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 28528587 - 28528401
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||  ||||| |||| || |||| |    
T  28528587 aaacgacgccatagtggtctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaatagtttctgttatagtttttttaggtcttc 28528488  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||| |||||  || | |||||||||||| ||| ||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||    
T  28528487 ccctacttctagggatttgactcccctccatttgatctactgtccttactacagaatccacaagtcttctcccgacatgccgaaacc 28528401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 26016669 - 26016483
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| |||||| | || |||| |||||||||||| |||||| ||||||||||| |||||||| ||| |||||||||||  ||||| ||||||| ||||||    
T  26016669 aaacgacgccacaatgttctaccaaaaaccatgtttttctctaactcatttatctctagatcattcctaatagtttctcttatagtttttctaggtctac 26016570  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
     | |||||||||| |||| |||||||| ||||||| ||| ||||||||||||| ||| || | ||||||| ||||||| ||||||||    
T  26016569 tcttacctctagtgatctgactccccttcatctgatctaatctccttgctacagaatgcataggtcttctttctacatacccaaacc 26016483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 50771629 - 50771791
Alignment:
Q  41 aaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactc 140  Q
    ||||||||||||||||||||||| ||| || ||||| |||||| ||||||||||   ||||| ||||||| |||| |||||||||||||| || | ||||    
T  50771629 aaaaaccatgtctttctccaacttattaatctctaggtccttcttaatagtttcgcttatagtttttctaggtcttcccctacctctagtcatttgactc 50771728  T
Q  141 ccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||| ||||||||||| ||||| ||||||   |||||||||||||| |||||||||    
T  50771729 ccctccatctgatctactctccttactacaaaatccatgggtcttctctctaca-gcccaaacc 50771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 10272473 - 10272305
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    |||||||||||||| || ||||||| ||| ||| ||||||||||||||| |||||||||||  ||||  ||||||| |||| |||||||||||||| ||     
T  10272473 tctatcaaaaaccaggtgtttctcctacttattaatttctagatccttcttaatagtttctcttataagttttctaggtcttcccctacctctagtgatt 10272374  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    | |||||| ||||||||| || |||||||| ||||  |||||||| |||||||||||||||||| |||||    
T  10272373 tgactcccatccatctgatctcctctccttcctac-gaatccacaggtcttctctctacatgccaaaacc 10272305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 27637689 - 27637867
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    |||||||  ||||||||||||||||||||||||||||||||| ||  ||||||||||| | |||||||||   | || |||| || |||| |||||||||    
T  27637689 ccatagtattctatcaaaaaccatgtctttctccaactcattgatcactagatccttcttgatagtttctctaaaagtttttttaggtcttcccctacct 27637788  T
Q  126 ctagttatctaactcccctcc--atctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    ||||| || |  |||| ||||  || ||| ||||||||||| |||||  ||||||||||||| ||||||||||||||||    
T  27637789 ctagtgatttgcctccactccatatatgatctactctccttactacaacatccacatgtcttttctctacatgcccaaa 27637867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 43898444 - 43898288
Alignment:
Q  38 atcaaaaaccatgtctttctccaactcatttatttctagatccttcat---aatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| |   ||||||||||  ||||| ||||| | ||||  |||||||| | || ||     
T  43898444 atcaaaaaccatgtttttctccaactcattaatctctagatccttcttctaaatagtttctcttatagtttttccaggtctttccctacctttggtgatt 43898345  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctac 193  Q
    | |||||||||||||||| ||||||||||| ||||||||||  || |||||||||||||    
T  43898344 tgactcccctccatctgatctactctccttactacataatc--caagtcttctctctac 43898288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 51584976 - 51584864
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||| | ||||||| |||||||||||| ||||||||||||| |||||| || || |||||| || |||||||||||  ||||| ||||||| |||| |    
T  51584976 aaacaatgtcatagtgttctatcaaaaacaatgtctttctccagctcattaatgtccagatccctcttaatagtttctcttatagtttttctaggtcttc 51584877  T
Q  118 ccctacctctagt 130  Q
    |||||||||||||    
T  51584876 ccctacctctagt 51584864  T

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Target: chr1; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 7083122 - 7083011
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||||||||||| ||||||| || | |||||||||||||||||||| || ||||| ||| || |||||||||||  ||||| ||||||| |||| |    
T  7083122 aaacgacgccatagtgttctatcataaccgatgtctttctccaactcattaatctctagttccatcttaatagtttctcttatagcttttctaggtcttc 7083023  T
Q  118 ccctacctctag 129  Q
    ||||||||||||    
T  7083022 ccctacctctag 7083011  T

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Target: chr1; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 12261780 - 12261949
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    ||||||||||||||||||||||||||||| ||| ||  |||  | |||| || ||||||||  ||||| ||||||| ||||  ||| ||||||||| ||     
T  12261780 tctatcaaaaaccatgtctttctccaactaattaatccctaatttcttcttactagtttctcttatagtttttctaggtcttaccccacctctagtgatt 12261879  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    | |||| |||||||| || |||| ||| || ||||| |||||| | |||||| ||| |||||||||||||    
T  12261880 tgactctcctccatcagatctaccctcattactacaaaatccaaaagtcttccctccacatgcccaaacc 12261949  T

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Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 42501301 - 42501154
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || | |||||| ||| ||||| |||||  ||||| ||||||| || | || ||||||||| | || | ||| ||||||||||||||||    
T  42501301 tccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggttttcctctacctctaatgatttgactaccctccatctgaacta 42501202  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||||| |||||||  ||||  |||||||||| |||||||    
T  42501201 ctctcctttctacagaatccacgggtctcttctctacatgtccaaacc 42501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 29807979 - 29807914
Alignment:
Q  137 actcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    |||||||||||| | | |||||||| || |||||||||||||||||||||||||||||||||||||    
T  29807979 actcccctccatttaatctactctctttactacataatccacatgtcttctctctacatgcccaaa 29807914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 37263532 - 37263377
Alignment:
Q  48 atgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctcca 147  Q
    |||| ||||||||||||||| || |||||||| ||| | ||||||||    ||||  |||||| |||| |||||||||||||| || | || ||||||||    
T  37263532 atgtgtttctccaactcattgatctctagatc-ttcttgatagtttcactaatagtatttctaggtcttcccctacctctagtgatttgacacccctcca 37263434  T
Q  148 tctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||  |||||||||| |  ||  ||||||| || |||||||||||||||||||||    
T  37263433 tctgatttactctccttaccgcaacatccacaagttttctctctacatgcccaaacc 37263377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 23791786 - 23791880
Alignment:
Q  110 atgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||  |||| |||| ||||  |||||||| | |||| || ||  |||||||||||||||||||||||||||||||| ||||||    
T  23791786 atgtctacccctacccttagtgatctgactcatctccatctcatctacccttctaactacataatccacatgtcttctctctacatgcacaaacc 23791880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 39422179 - 39422276
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaa 201  Q
    |||||||  |||| |||||||||| || || | |||||||||||| ||| ||| ||||||  |||||||||| |||||||||||||||||||| ||||    
T  39422179 ttttctagatctagccctacctctggtgatttgactcccctccatatgatctattctcctaactacataatctacatgtcttctctctacatgtccaa 39422276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 52442600 - 52442761
Alignment:
Q  40 caaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaact 139  Q
    ||||||| |||||||| ||||||||||| |  |||||||||||| | |||||||||  ||||  | ||||| |||| || ||||||||||  || | |||    
T  52442600 caaaaactatgtctttatccaactcattaacatctagatccttcttgatagtttctcttatatttgttctaggtcttcctctacctctagagatttgact 52442699  T
Q  140 cccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaa 201  Q
    ||| ||||||||| ||||||||    ||||| || |||||||| ||||||  ||||||||||    
T  52442700 cccttccatctgatctactctctgcactacagaacccacatgttttctcttcacatgcccaa 52442761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 15577650 - 15577467
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    ||||||| | ||| || ||||||||| | ||| ||| | ||||||||||| || |||| ||||||| |||||||||||  |||   |||| ||  ||| |    
T  15577650 aaacaacacaataatgttctatcaaatatcatatctctatccaactcattaatctctatatccttcttaatagtttctcttattatttttttagatcttc 15577551  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    | ||||||||||| || | |||    ||||||||| ||||||||||| ||||| ||||| |||||||||||| ||||||| ||||||    
T  15577550 ctctacctctagtgatgtgacta---tccatctgatctactctccttactacagaatccgcatgtcttctctatacatgctcaaacc 15577467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 853874 - 854021
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||| | || |||||||||||| ||||||||||| ||||||||||| || |||| || || |||||||| || | |||   || ||||||    |    
T  853874 tccaactcactaatctctagatccttcttaatagtttctcgtatagattttttaggtcttcctctgcctctagtgatttgactaatcttcatctggtaaa 853973  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||||||||||  |||||  |||||||||||||| |||||    
T  853974 ctctccttactacataatcttcatgttatctctctacatgcctaaacc 854021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 17640222 - 17640289
Alignment:
Q  137 actcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||| ||||||||||| ||||| |||||||  |||| ||||||||||||| |||||    
T  17640222 actcccctccatctgatctactctccttactacaaaatccacgggtctcctctctacatgcctaaacc 17640289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 6641343 - 6641181
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||||||||||| | |||| |||| |||| ||||||| ||||||||||| |||| ||  ||| | | ||||| |  ||||| || |||| ||||||    
T  6641343 aaacgacgccatagtgttttatcgaaaatcatgcctttctcaaactcatttatctctatattattcctgacagtttttcttatagtttgtctaggtctac 6641244  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacat 180  Q
    ||  ||||||||| || | ||| |||||||| |||  ||||||||| |||||| |||||||||    
T  6641243 ccacacctctagtgatttgacttccctccatttgatttactctcctagctacaaaatccacat 6641181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 3818947 - 3819092
Alignment:
Q  59 caactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactact 158  Q
    ||||||||| || |||| ||| ||| |||||||||||  ||||| ||||| | |||| || ||  |||||||  | | | | |||||||||||| |||||    
T  3818947 caactcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtcttcctctttctctagtggtttgattaccctccatctgatctact 3819046  T
Q  159 ctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||| || ||| | |||||||| ||||||| ||||||||||||||||    
T  3819047 ctctttactagagaatccacaagtcttctttctacatgcccaaacc 3819092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 14224323 - 14224274
Alignment:
Q  12 atgaataaacaacgccatagtgatctatcaaaaaccatgtctttctccaa 61  Q
    |||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  14224323 atgaataaatgacgccatagtggtctatcaaaaaccatgtctttctccaa 14224274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 19969269 - 19969370
Alignment:
Q  25 gccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacc 124  Q
    ||||||||| ||| ||||| ||||||  ||||||||||||||| || |||||||| ||  |||||||||||  ||||| ||||||| |||| | ||||||    
T  19969269 gccatagtgttctgtcaaagaccatgaatttctccaactcattaatctctagatctttgttaatagtttctcttatagtttttctaggtcttctcctacc 19969368  T
Q  125 tc 126  Q
    ||    
T  19969369 tc 19969370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 48431510 - 48431642
Alignment:
Q  72 tctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacat 171  Q
    |||| ||| ||| |||||||||||  ||||| |||| |  |||| || |||||||| || |||  |||  ||||||||||| | |||||| || |||||     
T  48431510 tctaaatctttcttaatagtttctcttatagtttttttgggtcttcctctacctcttgtaatccgactatcctccatctgatcaactctctttactacaa 48431609  T
Q  172 aatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| ||| ||||||||||||||||||||||||    
T  48431610 aatctacaagtcttctctctacatgcccaaacc 48431642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 30834066 - 30834213
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| ||| |||||||||||  ||||| ||||||| |||| || || ||||||   || | ||| || ||||||||| |||    
T  30834066 tccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttcctctccctctatcgatttgactaccttccatctgatcta 30834165  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||  || | ||||  || |||||||||||||| | |||||||    
T  30834166 ctctccttattatagaatctgcaagtcttctctctacacgaccaaacc 30834213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 5338876 - 5338770
Alignment:
Q  98 tatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgc 197  Q
    ||||| ||||||| ||||||  || |||||||| |||| | |  ||||||||||| ||||||||||| ||| |  ||| ||| ||||||||||| |||||    
T  5338876 tatagtttttctaggtctacttctgcctctagtgatctgaatatcctccatctgatctactctccttactaaagcatctacaggtcttctctctgcatgc 5338777  T
Q  198 ccaaacc 204  Q
    |||||||    
T  5338776 ccaaacc 5338770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 37263590 - 37263540
Alignment:
Q  17 taaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatt 67  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  37263590 taaacgacgccatagtgttctatcaaaaatcatgtgtttctccaactcatt 37263540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 38869114 - 38868928
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| |||||||| || ||||||| | ||||| | | | |||||| |||| ||  ||||||| ||| ||||| |||||  ||||| ||||||| |||| |    
T  38869114 aaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttcttaataatttctcttatagtttttctaggtcttc 38869015  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
      || |||||| | || | ||| |||||||||| | |||||||||| |||| | |||| ||  || |||||||||||||||||||||    
T  38869014 ttctgcctctaatgatttgactaccctccatctaatctactctcctcgctagagaatctactagtgttctctctacatgcccaaacc 38868928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 8796436 - 8796255
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || ||||||| ||||||| | |   ||||| ||||| || |||||||| ||| |||||||||||  || || |||| |  |||| || ||     
T  8796436 acgccataatgttctatcataaaccatatttcaatccaagtcattaatatctagatctttcttaatagtttctcttaaagtttttattggtcttcctctg 8796337  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| |||| |||  |||||||| ||  |||||||||| ||||  || | ||||||||| |||||||||| |||||||    
T  8796336 cctctagtgatctgactatcctccatccgatttactctccttactacgaaacctacatgtcttatctctacatgtccaaacc 8796255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 46388491 - 46388430
Alignment:
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatg 196  Q
    ||||| ||||||| |||| ||||||||||| ||||| |||| ||| ||||||||||||||||    
T  46388491 taactaccctccaactgagctactctccttactacagaatctacaagtcttctctctacatg 46388430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 46394935 - 46394874
Alignment:
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatg 196  Q
    ||||| ||||||| |||| ||||||||||| ||||| |||| ||| ||||||||||||||||    
T  46394935 taactaccctccaactgagctactctccttactacagaatctacaagtcttctctctacatg 46394874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 32404618 - 32404762
Alignment:
Q  60 aactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactc 159  Q
    |||||||| || |||| ||| ||| |||||||||||  ||||| |||| || |||| || |||||||| || || | |||  |||||||||   ||||||    
T  32404618 aactcattaatctctaaatctttcctaatagtttctcttatagtttttgtaggtcttcctctacctcttgtgatatgactatcctccatcttctctactc 32404717  T
Q  160 tccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||| ||| | |||| ||| |||||||||||||||  |||||||    
T  32404718 tccttactatagaatctacaggtcttctctctacatatccaaacc 32404762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 43423865 - 43423765
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    ||||||| |||| || ||||||||||| || | ||| |  |||||||   ||||||| ||| |||||||||| ||| |||||||||||||||| ||||||    
T  43423865 ttttctaggtcttcctctacctctagtgatttgactactatccatctagtctactctacttactacataatctacaagtcttctctctacatggccaaac 43423766  T
Q  204 c 204  Q
    |    
T  43423765 c 43423765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 50806899 - 50806750
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||||||||||||| | ||||| ||||||| | ||| |||||| |||| || |||  ||||||| | |||||||||  ||| | ||||||| |||| |    
T  50806899 aaacaacgccatagtgttttatcataaaccatatttttatccaacgcattaatctct--atccttcttgatagtttctcttattgtttttctaggtcttc 50806802  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctac 169  Q
      |||| |||||| || | |||||||||||| ||| |||| |||||| ||||    
T  50806801 atctacttctagtgatttgactcccctccatttgatctaccctccttactac 50806750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 10569240 - 10569303
Alignment:
Q  141 ccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||| | |||| |||| | ||||| |||| ||| ||||||||||||||||||||||||    
T  10569240 ccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgcccaaacc 10569303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 19908214 - 19908273
Alignment:
Q  143 ctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    ||||||||||  | |||||||| |||||||||| ||| || |||||||||||||||||||    
T  19908214 ctccatctgatttgctctccttactacataatctacaggttttctctctacatgcccaaa 19908273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 27704116 - 27704056
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||||||||||||||||||||||   | ||||| |||||||||| |||||||    
T  27704116 cctccatctgatctactctccttgctacataatc--taggtcttttctctacatgtccaaacc 27704056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 40416564 - 40416417
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || | |||||| ||| ||||||||| |  ||||| ||||||| |||| |  ||  || | || |||| |||  ||| ||||||| |||    
T  40416564 tccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtcttcttctgtctttggtgatctgactatcctgcatctgatcta 40416465  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||||| |||| |||  ||||||||||||||||| |||||    
T  40416464 ctctccttactacaaaatctacagttcttctctctacatgcctaaacc 40416417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 52561678 - 52561781
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| |  |||| ||| ||| ||| |||||||  ||||| ||||||| |||| || ||||||||  | ||||||||| ||||||||||| |||    
T  52561678 tccaactcattaacctctaaatctttcctaacagtttctcttatagtttttctaagtcttcctctacctcttctaatctaactctcctccatctgatcta 52561777  T
Q  157 ctct 160  Q
    ||||    
T  52561778 ctct 52561781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 2544707 - 2544645
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||||||||||| ||| | |||| | | |||||||||||||||| |||||||    
T  2544707 cctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaacc 2544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 43954302 - 43954268
Alignment:
Q  141 ccctccatctgaactactctccttgctacataatc 175  Q
    |||||||||||| ||||||||||||||||||||||    
T  43954302 ccctccatctgatctactctccttgctacataatc 43954268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 4590694 - 4590763
Alignment:
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||| |||||||||| | |||||||| || ||||| |||| |||  |||||||||| ||||||||||||    
T  4590694 taactaccctccatctaatctactctctttactacaaaatctacagatcttctctctgcatgcccaaacc 4590763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 13578952 - 13579028
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    |||| ||| ||||||| ||||||||||  |||| ||||||| ||||||||||| |||| ||  |||||||||||||||    
T  13578952 aaacgacgtcatagtgttctatcaaaattcatg-ctttctcaaactcatttatctctaaatatttcataatagtttct 13579028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 13827701 - 13827806
Alignment:
Q  99 atagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcc 198  Q
    |||| ||||||| |||| || || |||||||| |||| |||    ||||| ||| ||||||||||| ||||| |||| |||  ||||||||||||||| |    
T  13827701 atagtttttctaggtcttcctctgcctctagtgatctgactatgttccatatgatctactctccttactacagaatctacacttcttctctctacatgtc 13827800  T
Q  199 caaacc 204  Q
    ||||||    
T  13827801 caaacc 13827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 43375764 - 43375817
Alignment:
Q  145 ccatctgaactactctccttgctacataatccacatgtcttctctctacatgcc 198  Q
    |||||||| |||||||| || |||||||||| | | ||||||||||||||||||    
T  43375764 ccatctgatctactctctttactacataatctataggtcttctctctacatgcc 43375817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 990635 - 990695
Alignment:
Q  144 tccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| | ||||||||||||||||| |||| | ||||||||||| ||||| || |||||    
T  990635 tccatctaatctactctccttgctacagaatctatatgtcttctctttacatacctaaacc 990695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 19969367 - 19969419
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctaca 194  Q
    ||||||||||| ||| ||||||| | |||||||||| | ||||||||||||||    
T  19969367 cctccatctgatctagtctccttaccacataatccataagtcttctctctaca 19969419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 36339880 - 36340031
Alignment:
Q  44 aaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccc 143  Q
    |||||||| | | ||||||||||| ||||| | ||| ||| |||||||||||   |||| ||||||| |||| || ||||||||||| |||||  |  ||    
T  36339880 aaccatgtttctgtccaactcattaatttcaa-atctttcctaatagtttctctgatagtttttctaggtcttcctctacctctagtgatctaggtatcc 36339978  T
Q  144 tccatctgaactactctccttgctacataatccacatgtcttctctctacatg 196  Q
    ||||||||| | || | |||| ||||| |||| | | ||||||||||| ||||    
T  36339979 tccatctgatcaacccgccttactacaaaatctataggtcttctctctccatg 36340031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 52532671 - 52532743
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    |||||||| || ||||||| ||||||| | ||  ||||||||||| ||||||| ||| ||| |||||||||||    
T  52532671 acgccataatgttctatcataaaccatattttgttccaactcattaatttctaaatctttcctaatagtttct 52532743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 7531702 - 7531857
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| ||||||| |||||||| |||||    
T  7531702 ccatagtgttctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcgtatagtttttctaggtctacccttacct 7531801  T
Q  126 ctagttatctaactcccctccatctgaactactctccttgctacataatccacatg 181  Q
    ||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||    
T  7531802 ctagtgatctgactcccctccatctgatctactctccttactacataatccacatg 7531857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 32043815 - 32043636
Alignment:
Q  25 gccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacc 124  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||| | |||||||||   |||| |||| || |||| ||||||||    
T  32043815 gccatagtgttctatcaaaaaccatgtctttctccaactcattgatctttagatccttcttgatagtttctctaatagtttttttaggtcttcccctacc 32043716  T
Q  125 tctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||| || | || ||||||||||||| ||| ||||||| |||||  ||||||| |||||||||||||||| |||||||    
T  32043715 tctagtgatttgacacccctccatctgatctattctccttactacaacatccacaggtcttctctctacatggccaaacc 32043636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 39953314 - 39953500
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    ||||||| ||||||||  | |||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||  | ||| ||| ||| ||||||    
T  39953314 aaacaactccatagtgtcccatcaaaaaccatgtttttctctaactcatttatctctagatccttcctaatagtttctcttttagttttcctaggtctac 39953413  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||||| |||| | || ||| ||||||| ||||||||||| |||||||||||| | |||  ||||||||||||| |||||    
T  39953414 ccctacctctagtgatctgattcgccttcatctgatctactctccttactacataatccataggtcacctctctacatgcctaaacc 39953500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 30812874 - 30812976
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||    
T  30812874 ccatagtgttctatcaaaaaccatgtctttttccaactcatttatctctagatccttcctaacagtttcttgtatagtttttctaggtctacccctacct 30812973  T
Q  126 cta 128  Q
    |||    
T  30812974 cta 30812976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 16351602 - 16351424
Alignment:
Q  25 gccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacc 124  Q
    ||||||||| ||||| |||||||||||||||||| |||||||| || |||||||||||| |||||||||||   |||| ||||||| |||| | |||| |    
T  16351602 gccatagtgttctattaaaaaccatgtctttctc-aactcattaatctctagatccttcttaatagtttctctaatagtttttctaggtcttctcctatc 16351504  T
Q  125 tctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    || ||| |  | |||||||||||||||| ||||||||||| |||||| ||||| | || ||||||||||||||| |||||    
T  16351503 tcaagtgacttgactcccctccatctgatctactctccttactacatgatccaaaagttttctctctacatgcctaaacc 16351424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 38409130 - 38409232
Alignment:
Q  76 gatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatc 175  Q
    |||||||||||||||||||  |||||| ||||||| ||||||||||||||| |||  | | |||| ||||||||||| ||||||||||||||||||||||    
T  38409130 gatccttcataatagtttcgcgtatagtttttctaggtctacccctacctccagtggtttgactctcctccatctgatctactctccttgctacataatc 38409229  T
Q  176 cac 178  Q
    |||    
T  38409230 cac 38409232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 10079996 - 10080143
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| ||| ||| ||||| |  ||||| || |||| |||| || ||||||||||| || | |||||||| ||| ||| |||    
T  10079996 tccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtcttcctctacctctagtgatttgactccccttcatttgatcta 10080095  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||||    
T  10080096 ctctccttactacaaaatcctcaggtcttctctctacatgcccaaacc 10080143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 29520876 - 29520696
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || ||||||| ||||||| | |   ||||||||||| || |||| ||| ||| ||| |||||||  ||||| ||||||| | || || |||    
T  29520876 acgccataatgttctatcataaaccatatttggatccaactcattaatctctaaatcgttcctaacagtttctcttatagtttttctagg-cttcctcta 29520778  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||| || || | |||  ||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||||||||||||    
T  29520777 cctcttgtgatttgactatcctccatctgatctactctccttactacaaaatctacaagtcttctctctacatgcccaaacc 29520696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 25985736 - 25985836
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    |||||||  |||||||||||||||||  |||| |||||| ||||||||| ||||||||||| ||||| ||| |||| |||||||||||| |||| |||||    
T  25985736 ttttctagatctacccctacctctagcgatctgactcccttccatctgatctactctccttactacaaaattcacaggtcttctctctaaatgcacaaac 25985835  T
Q  204 c 204  Q
    |    
T  25985836 c 25985836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 35914656 - 35914837
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttat-ttctagatccttcataatagtttcttgtatagattttctatgtctacccct 121  Q
    |||||||| || ||||||| ||||||| | ||  ||||||||||| || ||| || || ||| |||||||||||  ||||| |||||||||||| || ||    
T  35914656 acgccataatgttctatcataaaccatattttggtccaactcattaatcttcaag-tctttcctaatagtttctcttatagtttttctatgtcttcctct 35914754  T
Q  122 acctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
      ||||||  |||| |||  ||||||||||| ||||||||||||||| | |||| | | ||||||||||||| ||||||||||    
T  35914755 gtctctagggatctgactatcctccatctgacctactctccttgctataaaatctataggtcttctctctacgtgcccaaacc 35914837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 38901875 - 38901945
Alignment:
Q  24 cgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttc 94  Q
    |||||||||| | ||||||||||||||||||||||||| ||||| || ||||||| |||| ||||||||||    
T  38901875 cgccatagtgttatatcaaaaaccatgtctttctccaaatcattaatctctagattcttcctaatagtttc 38901945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 26685977 - 26686066
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtct 115  Q
    |||||||| ||||||||||||||||||||||||||||||||  || ||||| |||| | ||| |||||||  ||||| ||||||| ||||    
T  26685977 ccatagtgttctatcaaaaaccatgtctttctccaactcatcaatctctaggtcctacttaacagtttctcttatagcttttctaggtct 26686066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 25985697 - 25985578
Alignment:
Q  71 ttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctaca 170  Q
    ||||| ||||||| ||||||||||   | ||| ||||||| |||| || ||||||||||| || | |||||||| ||||||| ||| ||||||| || ||    
T  25985697 ttctaaatccttcttaatagtttcccatttagtttttctaggtcttcctctacctctagtgatttgactcccctacatctgatctagtctccttacttca 25985598  T
Q  171 taatccacatgtcttctctc 190  Q
     ||| |||||||||||||||    
T  25985597 aaattcacatgtcttctctc 25985578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 30559886 - 30559739
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||| ||| ||| | |||||||||  ||||| |||| || |||| |  ||| ||||||| |||  |||  ||||||||||| | |    
T  30559886 tccaactcattaatctctaaatctttcctgatagtttctcttatagtttttttaagtcttcatctatctctagtgatccgactatcctccatctgatcca 30559787  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    || ||||| ||||| |||| |||||||||||||||| |||||||||||    
T  30559786 ctgtccttactacaaaatctacatgtcttctctctaaatgcccaaacc 30559739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 38178349 - 38178479
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || ||||| || ||  |||||||||||  ||||| ||||||| |||| || ||||||||||  || | |||  ||||||||||| |||    
T  38178349 tccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtcttcctctacctctagcgatttgactatcctccatctgatcta 38178448  T
Q  157 ctctccttgctacataatccacatgtcttct 187  Q
    |||||||| ||||| |||| ||| |||||||    
T  38178449 ctctccttactacaaaatctacaggtcttct 38178479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 30456344 - 30456436
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttcta 110  Q
    |||| ||||||||||| |||||||||||| || |||||||| |||| | |||| |||||||| ||  |||||||||||  ||||| |||||||    
T  30456344 aaacgacgccatagtgttctatcaaaaacaatatctttctcgaacttagttatatctagatcatttctaatagtttctcttatagtttttcta 30456436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 541433 - 541503
Alignment:
Q  37 tatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagatttt 107  Q
    ||||||||||||||||||||||| |||  ||||| | ||||||| || ||||||||||| |||||| ||||    
T  541433 tatcaaaaaccatgtctttctcctacttgtttatctttagatccctcctaatagtttctcgtatagttttt 541503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 29700422 - 29700322
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    ||||||| |||| || ||||||||||| || | |||  ||||||||| | ||||||||||| ||||| ||||||   ||||| |||||| ||||||||||    
T  29700422 ttttctaggtcttcctctacctctagtgatatgactatcctccatctaatctactctccttactacagaatccaatggtcttttctctatatgcccaaac 29700323  T
Q  204 c 204  Q
    |    
T  29700322 c 29700322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 41971954 - 41972014
Alignment:
Q  144 tccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| |||| ||||||||||||||| | |||| ||| |||||||||||||||| |||||||    
T  41971954 tccacctgatctactctccttgctagaaaatctacacgtcttctctctacatgtccaaacc 41972014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 192
Target Start/End: Original strand, 38391986 - 38392117
Alignment:
Q  61 actcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactct 160  Q
    ||||||| || | |||||| ||| |||| ||||||  ||||| ||||||| |||| || ||  || |||| | || ||| |||| ||||||| |||||||    
T  38391986 actcattaatctgtagatctttcttaatggtttctcatatagtttttctaggtcttcctctgtctatagtgagctgactacccttcatctgacctactct 38392085  T
Q  161 ccttgctacataatccacatgtcttctctcta 192  Q
    |||  ||||| |||| ||||||||||||||||    
T  38392086 cctcactacagaatcaacatgtcttctctcta 38392117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 45331741 - 45331786
Alignment:
Q  141 ccctccatctgaactactctccttgctacataatccacatgtcttc 186  Q
    |||||||||||| ||||||||||| |||||||||||| | ||||||    
T  45331741 ccctccatctgatctactctccttactacataatccataggtcttc 45331786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 44437770 - 44437957
Alignment:
Q  17 taaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtcta 116  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| |||||    
T  44437770 taaacaacgccatagtgttctatcaaaaaccatgtttttctccaactcatttatctctagatccttcttaatagtttctcatatagtttttctaggtcta 44437869  T
Q  117 cccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||| |||| |||||||||||||| | |||  ||||||  |||| |||||||| |||||||||||||||||| |||||    
T  44437870 cccctacctctagtgatctgactcccctccatctcatctatactccttattacagaatccacaagtcttctctctacatgccgaaacc 44437957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 42543467 - 42543281
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||||||||||| | ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| ||||||    
T  42543467 aaacaacgccatagcgttctatcaaaaagcacgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctac 42543368  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||||| |||| |||||||||||| ||| ||||||||||  ||||| |||||||| ||||||||| ||||||||||||||    
T  42543367 ccctacctctagtgatctgactcccctccatttgatctactctcctaactacagaatccacaggtcttctctgtacatgcccaaacc 42543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 4598617 - 4598742
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||| |||||| |||| |||||| ||||||| || |||| |||    
T  4598617 acgccatagtgttctatcaaaatctatgtctttctccaactcatttatctctagatccttcctaatagcttctcgtatagtttttctaggtttaccacta 4598716  T
Q  123 cctctagttatctaactcccctccat 148  Q
    |||||||| | || ||||||||||||    
T  4598717 cctctagtgacctgactcccctccat 4598742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 33594332 - 33594508
Alignment:
Q  27 catagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctc 126  Q
    ||||||| |||||| |||||||| ||||||||||||| |||||| |||  ||| |||||||||||||||  ||||  |||||||| | ||||| ||||||    
T  33594332 catagtgttctatccaaaaccatttctttctccaacttatttatctctgtatctttcataatagtttctcttataatttttctatatttaccc-tacctc 33594430  T
Q  127 tagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||  | ||||||| ||| ||||||| ||| ||||||| ||||  |||||||||||||||||||||||||| ||||||    
T  33594431 tagcgacctaactctccttcatctgatctattctccttactaccaaatccacatgtcttctctctacatgctcaaacc 33594508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 12489852 - 12489964
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| |||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| ||||||    
T  12489852 aaacgacgccaaagtgttatatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcatatagtttttctaggtctac 12489951  T
Q  118 ccctacctctagt 130  Q
    |||||| ||||||    
T  12489952 ccctacttctagt 12489964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 37481684 - 37481853
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    ||||||||| ||||| | ||| ||||||||||||||  ||||||| ||| |||||||||||   |||| ||||||  |||| |  ||||||| ||| |||    
T  37481684 tctatcaaataccatatttttatccaactcatttatcgctagatctttcttaatagtttctctaatagtttttcttggtcttcatctacctccagtgatc 37481783  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||||| ||||||||||  ||||| ||| |||| ||||||||||||||||| ||||||    
T  37481784 taactcccctccatctgatctactctcctaactacaaaattcacaagtcttctctctacatgctcaaacc 37481853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 5759053 - 5759189
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |  ||||||||   |||| ||||||| || |  ||||||||    
T  5759053 ccatagtgttctatcaaaaaccatgtctttctccaactcattgatctctagatccttcttggtagtttctctaatagtttttctaggtatttccctacct 5759152  T
Q  126 ctagttatctaactcccctccatctgaactactctcc 162  Q
    ||||| || | | |||||||||||||| |||||||||    
T  5759153 ctagtgatttgattcccctccatctgatctactctcc 5759189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 12470947 - 12471014
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcat 85  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12470947 aaacgacgccatagtgatatatcaaaaaccatgtctttctccaactcatttatctctagatccttcat 12471014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 19235051 - 19235212
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    ||||||||| ||||| | | | ||||| ||||| || |||||||| |||  ||||||||||  ||||| ||||||| |||| || ||| ||||||| ||     
T  19235051 tctatcaaataccatatttctatccaaatcattaatctctagatctttctcaatagtttctcttatagtttttctaggtcttcctctatctctagtgatt 19235150  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatg 196  Q
    | |||||||||||||||| |||||||| || ||||| ||||| || ||||||||| ||||||    
T  19235151 tgactcccctccatctgatctactctctttactacagaatccgcaggtcttctctttacatg 19235212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 28960269 - 28960338
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||    
T  28960269 ccatagtgctctatcaaaaaccatatctttctccaactcatttatctctagatccttcttaacagtttct 28960338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 38435145 - 38434998
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    |||||| |||| || |||||||| ||| |||||||||||  | ||| ||||||| ||||||| || |||||||| |||| |||  ||||||| ||| |||    
T  38435145 tccaacacattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgcctctagtgatctgactatcctccatatgatcta 38435046  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||| |  ||| ||| ||||||||| ||||||||||||||    
T  38435045 ctctccttactaaagcatctacaagtcttctctttacatgcccaaacc 38434998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 23714391 - 23714496
Alignment:
Q  98 tatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgc 197  Q
    ||||| ||||||| |||| |  |||| |||||| || | ||||||| |||| ||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  23714391 tatagtttttctaagtcttcatctacgtctagtgatttgactccccaccatttgatctactctccttactacataatccacaagtcttctctctacatgc 23714490  T
Q  198 ccaaac 203  Q
    | ||||    
T  23714491 ctaaac 23714496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 24102063 - 24102168
Alignment:
Q  98 tatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgc 197  Q
    ||||| ||||||| |||| |  |||| |||||| || | ||||||| |||| ||| ||||||||||| |||||||||||||| |||||||||||||||||    
T  24102063 tatagtttttctaagtcttcatctacgtctagtgatttgactccccaccatttgatctactctccttactacataatccacaagtcttctctctacatgc 24102162  T
Q  198 ccaaac 203  Q
    | ||||    
T  24102163 ctaaac 24102168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 43832291 - 43832146
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||||||| |||||||||||  ||||| || | || |||| || || | |||| | || | | | | |||||||||| |||    
T  43832291 tccaactcattaatctctagatccttcttaatagtttctcttatagtttgtttaggtcttcctctgcgtctactgatttgattactctccatctgatcta 43832192  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    |||||||  ||||||||||||||||| |||||| ||||||||||||    
T  43832191 ctctcctaactacataatccacatgttttctctgtacatgcccaaa 43832146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 26784431 - 26784575
Alignment:
Q  59 caactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactact 158  Q
    ||||||||| || |||| ||| ||| |||||||||||  ||||| ||||||| ||||  | || |||||||| || | ||| |||||||||| | ||||     
T  26784431 caactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgcctctagtgatttgactaccctccatcttatctacc 26784530  T
Q  159 ctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    |||||| ||||| ||||||||| ||||||||||| |||| |||||    
T  26784531 ctccttactacaaaatccacatatcttctctctaaatgcacaaac 26784575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 3481249 - 3481187
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||||||||||||||||| |||| | | |||||||||||||||| |||||||    
T  3481249 cctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaacc 3481187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 37470222 - 37470356
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || ||||||||  || |||||||||||  ||||| ||||  | |||| || ||||| ||||| |||| ||| || ||||||| | |||    
T  37470222 tccaactcattaatctctagatctgtcctaatagtttctcttatagttttttcaggtcttcctctaccactagtgatctgactaccttccatctaatcta 37470321  T
Q  157 ctctccttgctacataatccacatgtcttctctct 191  Q
    ||||||||  ||||||||| ||| |||||||||||    
T  37470322 ctctccttaatacataatctacaagtcttctctct 37470356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 43752036 - 43752181
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| ||||| | ||| ||| |||||||||||   |||| ||||||| |||| ||  | |||| ||| |||| | |  ||||||||||| |||    
T  43752036 tccaactcattaatttccaaatctttcctaatagtttctctgatagtttttctaggtcttcctatgcctccagtgatctgagtatcctccatctgatcta 43752135  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    |||||| | |||||||||| | | |||||||||||||||| |||||    
T  43752136 ctctccctactacataatctataggtcttctctctacatgtccaaa 43752181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 12141709 - 12141590
Alignment:
Q  85 taatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtct 184  Q
    |||||||||||  ||||| ||||||| |||| || |||||||| || || | |||  |||| |||||| ||||||||||| ||| | |||| ||| ||||    
T  12141709 taatagtttctcctatagcttttctaggtcttcctctacctcttgtaatttgactatcctcaatctgatctactctccttactagagaatctacaggtct 12141610  T
Q  185 tctctctacatgcccaaacc 204  Q
    ||| ||||| ||||||||||    
T  12141609 tctttctacgtgcccaaacc 12141590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 13240931 - 13240981
Alignment:
Q  154 ctactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||| | |||| ||||||||||||||||||||||||||||    
T  13240931 ctactctccttactaaagaatctacatgtcttctctctacatgcccaaacc 13240981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 45077863 - 45077801
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||||||||||| ||||| |||| ||| || ||||||||||||||| |||||    
T  45077863 cctccatctgatctactctccttactacaaaatctacaagttttctctctacatgccaaaacc 45077801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 42092626 - 42092567
Alignment:
Q  141 ccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgccca 200  Q
    |||||||||| | ||||||||||| ||||| |||| ||| | ||||||||||||||||||    
T  42092626 ccctccatctaatctactctccttactacaaaatctacaagccttctctctacatgccca 42092567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 7293801 - 7293675
Alignment:
Q  51 tctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatct 150  Q
    ||||| ||||| | |||||| |||||||| ||  || | ||||||| | ||  ||||||| || |||||||||||||||| |||  ||| | ||||||||    
T  7293801 tctttttccaatttatttatctctagatcatttctagtggtttcttttctactttttctaggtttacccctacctctagtgatccgacttctctccatct 7293702  T
Q  151 gaactactctccttgctacataatcca 177  Q
    || ||||||||||  || |||||||||    
T  7293701 gatctactctcctaactgcataatcca 7293675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 7825468 - 7825406
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| | ||||||||||  ||| | |||| ||||||||||||||||||||| ||||||    
T  7825468 cctccatctcatctactctcctgactatagaatctacatgtcttctctctacatgctcaaacc 7825406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 29968661 - 29968707
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactc 64  Q
    |||||||||||||||| |||||  ||||||||| |||||||||||||    
T  29968661 aaacaacgccatagtgttctattgaaaaccatggctttctccaactc 29968707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 26670961 - 26670888
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagt 130  Q
    ||||||||||| || |||| ||| ||| |||||||||||| ||||| |||| || |||| || |||||||||||    
T  26670961 tccaactcattaatctctaaatctttcttaatagtttcttttatagtttttgtaggtcttcctctacctctagt 26670888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 33504401 - 33504312
Alignment:
Q  72 tctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctc 161  Q
    |||||||| ||| |||||||||||  ||||| ||||||| || |  | || |||||||| |||| ||| |||||||||||| ||||||||    
T  33504401 tctagatctttcttaatagtttctcttatagtttttctaggtttttctctgcctctagtgatctgactaccctccatctgatctactctc 33504312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 31897487 - 31897664
Alignment:
Q  27 catagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctc 126  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| |||||||||||||||    
T  31897487 catagtgttctatcaacaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctc 31897586  T
Q  127 tagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| |||| |||||||||||||| | | ||||||||  ||||| |||||||| |||| |||||||||||| ||||||    
T  31897587 tagtgatctgactcccctccatctaatcgactctcctaactacagaatccacaggtctgctctctacatgcgcaaacc 31897664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 46372239 - 46372070
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| ||||||||||||||||||| |||    
T  46372239 tctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacccctacctctagtgatc 46372140  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |  |||||||| |||||| || |||| |||  |||| |||||||||||||||||||||||||| ||||||    
T  46372139 tggctcccctctatctgatctgctcttcttagtacagaatccacatgtcttctctctacatgcacaaacc 46372070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 31961316 - 31961502
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||||| ||| |||||||||||  ||||| ||||||| ||||||    
T  31961316 aaacgacgtcatagtgttctatcaacaaccatgtctttctccaactcatttatctctagatctttcctaatagtttctcttatagtttttctaggtctac 31961415  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||||| || | ||||| |||||||| | | ||||||||  ||||| |||||||| ||||||||||||||||||||||||    
T  31961416 ccctacctctagtgatttgactcctctccatctaatccactctcctaactacagaatccacaagtcttctctctacatgcccaaacc 31961502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 42285753 - 42285936
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| ||||||    
T  42285753 aaacaatgccatagtattctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttct--tatagcttttctaggtctac 42285850  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||| ||||||||| |||| ||||||||||| |||| || |||| ||  ||||| |||||||| ||||||||| ||||||||||||||    
T  42285851 ccccacctctagtgatctgactcccctcca-ctgatctgctcttctgactacagaatccacaggtcttctctatacatgcccaaacc 42285936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 17900712 - 17900526
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||| ||| ||| | |||||||||  || || |||||||     ||    
T  17900712 aaacaacgccatagtgctctattaaaaaccatgtctttctacaactcatttatctctatatctttcctgatagtttctcttaaagtttttctacagacac 17900613  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| | |||| ||||| |||||||||| ||||||||||  |||||||||||||| ||||||||||||| ||||||||||    
T  17900612 ccctacctctaatgatctgactcctctccatctgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaacc 17900526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 10209256 - 10209080
Alignment:
Q  30 agtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtct--acccctacctct 127  Q
    |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||  ||||| ||||||| ||||   |||||||| ||    
T  10209256 agtgttctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaatagtttctcttatagtttttctaggtctccccccctaccact 10209157  T
Q  128 agttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||| || | |||| ||||||||||| ||||||||||| ||| | ||| |||| |||||||| |||||||||||||||    
T  10209156 agtcatatgactctcctccatctgatctactctccttactaaaaaattcacaggtcttctcgctacatgcccaaacc 10209080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 51550316 - 51550484
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    ||||||||||  |||||||||||| ||||||||||| |||||||||||| ||||||  |||  ||| | ||||| | |||||||||||||| |||| |||    
T  51550316 tctatcaaaagtcatgtctttctc-aactcatttatctctagatccttcctaatagcatctcttatggtttttccaggtctacccctacctttagtgatc 51550414  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    | |||||||||||||||| | ||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  51550415 tgactcccctccatctgatcaactctccttgctagagaatccacatatcttctctctacatgcccaaacc 51550484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 35555700 - 35555883
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| |||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||  |||   ||||||||||  ||||| ||||||| ||||||    
T  35555700 aaacgacgccatactgtactatcaaaaaccatgtctttctccaactcatttatctctagactctt---aatagtttctcttatagtttttctaggtctac 35555796  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||||| | | ||||| |||| |||| | ||||||||||  ||||| |||||||| |||||||||||| |||||||||||    
T  35555797 ccctacctctagtgacccaactctcctctatctaatctactctcctaactacagaatccacaggtcttctctctaaatgcccaaacc 35555883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 6478738 - 6478894
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||| |||||| | |||||||||||||||||||||| ||||||||||  |||||||||||| |||||||||||  | | | ||||||| |||||||||||    
T  6478738 acgctatagtgttgtatcaaaaaccatgtctttctctaactcatttacctctagatccttcctaatagtttctcttgtcgtttttctaggtctaccccta 6478837  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccaca 179  Q
     |||| || ||||||||||| ||||||||| ||||||||||  ||||||||||||||    
T  6478838 gctctggtgatctaactcccttccatctgatctactctcctaactacataatccaca 6478894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 58 - 204
Target Start/End: Complemental strand, 26356811 - 26356665
Alignment:
Q  58 ccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactac 157  Q
    |||||||||| || |||||||||||||||| |||||||  ||||| ||||||| |||| |||||||||||||| || | ||||||||||||| || ||||    
T  26356811 ccaactcattaatctctagatccttcataacagtttctcttatagtttttctaggtcttcccctacctctagtgatttgactcccctccatccgatctac 26356712  T
Q  158 tctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| |||||  | ||||||||||||||||||  ||||||||||    
T  26356711 tctccttactacaatacccacatgtcttctctctaagtgcccaaacc 26356665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 2589304 - 2589124
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||||||||||| ||||||||||||||| | ||  ||||||||||| || ||||||||| || | |||||||||  |||   ||||||| |||       
T  2589304 aaacgacgccatagtgttctatcaaaaaccatattttcatccaactcattaatctctagatccatcttgatagtttctcttatgctttttctaggtcgtg 2589205  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcc 198  Q
    | ||||||||||| || |||||||||||||| ||| ||||||||||  ||||| |||||||| || |||||||||||||||    
T  2589204 ctctacctctagtaatttaactcccctccatttgatctactctcctaactacagaatccacaagttttctctctacatgcc 2589124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 46715546 - 46715604
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgccca 200  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46715546 cctccatatgatctactctccttgctacataatccacatgtcttctctctacatgccca 46715604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 47147566 - 47147444
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| ||| |||||||||||| ||||| ||||||| |||| || || |||||||| |||  ||| | ||||||||||  ||    
T  47147566 tccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttcctctgcctctagtgatccgactactctccatctgattta 47147467  T
Q  157 ctctccttgctacataatccaca 179  Q
    |||||||| ||||||||||||||    
T  47147466 ctctccttactacataatccaca 47147444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 44360318 - 44360133
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||| ||||||| ||||||||||||| |||||||||||||||||||    || ||||||||| | | |||||||   |||| ||||||| |||| |    
T  44360318 aaacgacgtcatagtgttctatcaaaaaccgtgtctttctccaactcattggcctcaagatccttcttgacagtttctctaatagtttttctaagtcttc 44360219  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
     ||   | ||||| || |  ||||||||||| ||| ||| | ||||| ||||||  ||||||||||||||||||||||||||||||    
T  44360218 tccaggcactagtgatttgcctcccctccatatgatctattatccttactacatcgtccacatgtcttctctctacatgcccaaac 44360133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 2589120 - 2589036
Alignment:
Q  120 ctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| || |||||||||||||||||| ||||||||||  ||||| |||||||| || ||||||||||||||| |||||    
T  2589120 ctacctctagtaatttaactcccctccatctgatctactctcctaactacagaatccacaagttttctctctacatgcctaaacc 2589036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 28497597 - 28497535
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  28497597 cctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaacc 28497535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 50869930 - 50869994
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatcctt 82  Q
    |||| ||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  50869930 aaacgacgccatagtgttctaccaaaaaccatgtctttctctaactcatttatctctagatcctt 50869994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 10775531 - 10775584
Alignment:
Q  30 agtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttc 83  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  10775531 agtgttctatcaaaaaccatgtctttctccaactcattgttttctagatccttc 10775584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 51252633 - 51252693
Alignment:
Q  140 cccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgccca 200  Q
    ||||||||| ||| ||||||||||||| | | |||||||||||||||||||||||||||||    
T  51252633 cccctccatttgacctactctccttgccatagaatccacatgtcttctctctacatgccca 51252693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 28351752 - 28351617
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||| | || |||| ||| ||| |||||||||||  ||||| ||||||| ||||  | |||||||| || |||| |||  ||||||||||| |||    
T  28351752 tccaactcaataatctctaaatctttcgtaatagtttctcttatagtttttctaggtctttctctacctcttgtaatctgactatcctccatctgatcta 28351653  T
Q  157 ctctccttgctacataatccacatgtcttctctcta 192  Q
    |||||||| ||||| | || ||| ||||||||||||    
T  28351652 ctctccttactacagagtctacaggtcttctctcta 28351617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 33710158 - 33709970
Alignment:
Q  19 aacaacgccatagtgatctatcaaa---aaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtct 115  Q
    |||||||||||| || |||||||||   |||||| | | | ||||||||||| || ||||||||  || ||||||||||| |||| | |||| || |  |    
T  33710158 aacaacgccataatgttctatcaaatagaaccatatttctatccaactcattaatctctagatcagtcttaatagtttctcgtatggtttttataagcat 33710059  T
Q  116 acccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
     |||||  ||||||| |||| ||| |||||| ||||| | |||||| || ||||| ||||||||  ||||||||| ||||||| |||||    
T  33710058 tcccctgtctctagtgatctgactaccctccttctgatccactctctttactacagaatccacagttcttctctccacatgcctaaacc 33709970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 42639075 - 42639256
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || ||||||||| ||||| | | | ||||||||||| ||  ||||||| ||| |||||||||||  |  || |||||||  | | || |||    
T  42639075 acgccataatgttctatcaaataccatatttctatccaactcattaatcgctagatctttcttaatagtttctcttgcagtttttctagatattcctcta 42639174  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| || | |||||||||||||| |  ||| | |||| | ||| |||||| | |||||||||||||||| |||||||    
T  42639175 cctctagtgatttgactcccctccatctaatttaccccccttaccacagaatccataagtcttctctctacatgtccaaacc 42639256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 198
Target Start/End: Complemental strand, 50680933 - 50680792
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| |||  |||| |||||  ||||| ||||||| ||||||| || ||| |||| ||||||||  ||| |||  || |||    
T  50680933 tccaactcattaatctctagatctttctaaataatttctcttatagtttttctaggtctacctctgcctatagtgatctaactatccttcattggatcta 50680834  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcc 198  Q
    |||||||| ||||  |||| ||| | ||||||||||||||||    
T  50680833 ctctccttactacggaatctacaagccttctctctacatgcc 50680792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 54470302 - 54470253
Alignment:
Q  155 tactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  54470302 tactctccttactacataatttacatgtcttctctctacatgcccaaacc 54470253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 25257725 - 25257817
Alignment:
Q  112 gtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| |||||||||||||| || |   |||||||||||||| ||||||||||| | |||  || |||| ||||||||||||||||| ||||||    
T  25257725 gtcttcccctacctctagtgatttgtgtcccctccatctgatctactctccttacaacagcattcacaggtcttctctctacatgctcaaacc 25257817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 35622743 - 35622783
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttcta 75  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  35622743 tctatcaaaaaccatgtctttctccaactcatttatctcta 35622783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 6318895 - 6318836
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcat 85  Q
    |||||| | ||||||||||||||||| ||||||||| |||||| | ||||||||||||||    
T  6318895 ccatagagttctatcaaaaaccatgtttttctccaattcatttttctctagatccttcat 6318836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 13262444 - 13262393
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcattta 69  Q
    |||| ||| ||||||  |||||||||||||||||||||||||||||||||||    
T  13262444 aaacgacgtcatagttttctatcaaaaaccatgtctttctccaactcattta 13262393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 36556810 - 36556857
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactca 65  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||    
T  36556810 aaacaacgccatagtgtcctatcaaaaaccatgcctttctccaactca 36556857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 34233198 - 34233260
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| | ||||||||||| |||||||||| ||||||  |||||||||||| |||||||    
T  34233198 cctccatctcatctactctccttactacataatctacatgttctctctctacatgtccaaacc 34233260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 50471654 - 50471572
Alignment:
Q  122 acctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| || ||||||| |||||| ||  |||||||||||  || | ||| |||| ||||||||||||||||||||||||    
T  50471654 acctctagtaatttaactcctctccatatggtctactctccttaatatagaattcacaggtcttctctctacatgcccaaacc 50471572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 13805384 - 13805501
Alignment:
Q  87 atagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttc 186  Q
    |||||||||  ||||| ||||||| || | || || |||||||| |||| ||   ||||||| ||| ||| ||||||||||||| |||| | | ||||||    
T  13805384 atagtttctcttatagtttttctaggttttcctctgcctctagtgatctgacaatcctccatgtgatctagtctccttgctacaaaatctaaaggtcttc 13805483  T
Q  187 tctctacatgcccaaacc 204  Q
    ||||||||| ||||||||    
T  13805484 tctctacatacccaaacc 13805501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 1427405 - 1427520
Alignment:
Q  89 agtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctc 188  Q
    |||||||| ||||| |||| ||  ||| |||||||||||||| || | |||||||    | ||| ||||||||||| | ||| |||||||| ||| ||||    
T  1427405 agtttcttttatagtttttatagatcttcccctacctctagtgatttgactcccccttgtatgatctactctccttaccacaaaatccacaggtcctctc 1427504  T
Q  189 tctacatgcccaaacc 204  Q
    ||||||||| ||||||    
T  1427505 tctacatgctcaaacc 1427520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 44719532 - 44719575
Alignment:
Q  152 aactactctccttgctacataatccacatgtcttctctctacat 195  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||    
T  44719532 aactactctccttactacagaatccacaggtcttctctctacat 44719575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 21945727 - 21945845
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| ||||| | ||| ||| |||||||||||   |||| ||||||| |||| || |  |||||||| || | |||  ||||||||||| |||    
T  21945727 tccaactcattaatttccaaatctttcctaatagtttctatgatagtttttctaggtcttcctcagcctctagtgatgtgactatcctccatctgatcta 21945826  T
Q  157 ctctccttgctacataatc 175  Q
    |||||||| ||||| ||||    
T  21945827 ctctccttactacagaatc 21945845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 31339632 - 31339582
Alignment:
Q  154 ctactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||||| ||||||    
T  31339632 ctactatccttactacataatctacaagtcttctctctacatgctcaaacc 31339582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 36557185 - 36557223
Alignment:
Q  112 gtctacccctacctctagttatctaactcccctccatct 150  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  36557185 gtctacccctacctctagtcatctgactcccctccatct 36557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 49738639 - 49738697
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtct 115  Q
    ||||||||||| ||||||||||||||| ||||||||| |  ||||| ||||||| ||||    
T  49738639 tccaactcattaatttctagatccttcttaatagtttttattatagtttttctaggtct 49738697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 21214767 - 21214816
Alignment:
Q  155 tactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||| ||||| |||  ||| ||||||||||||||||||||||||    
T  21214767 tactctccttactacagaattaacaagtcttctctctacatgcccaaacc 21214816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 26024908 - 26024977
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    ||||| || ||||||| |||||||||||   ||||||||||| || |||||||| ||| |||||||||||    
T  26024908 ccataatgttctatcataaaccatgtctcgatccaactcattaatctctagatctttcttaatagtttct 26024977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 53518495 - 53518556
Alignment:
Q  143 ctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||| ||||||| | | |||||  ||||||| ||||||||||||||| ||||||||    
T  53518495 ctccatctgatctactcttcgtactacagcatccacaggtcttctctctacatacccaaacc 53518556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 21107157 - 21107035
Alignment:
Q  85 taatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatct-gaactactctccttgctacataatccacatgtc 183  Q
    |||||||||||  ||||| ||||||| |||| || || | || ||| |||| ||| |||||||||| || | ||||||||| |||||||||| ||| |||    
T  21107157 taatagtttctcttatagtttttctaggtcttccgctgcatccagtgatctgactaccctccatcttgatccactctccttactacataatctacaagtc 21107058  T
Q  184 ---ttctctctacatgcccaaac 203  Q
       ||||||||| ||||||||||    
T  21107057 gtcttctctctagatgcccaaac 21107035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 25257661 - 25257705
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatc 79  Q
    ||||||||||| ||||||||||| ||||||||| || ||||||||    
T  25257661 tctatcaaaaaacatgtctttcttcaactcattgatctctagatc 25257705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 38570951 - 38570983
Alignment:
Q  172 aatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||| ||||||||||||||||    
T  38570951 aatccacatgtcttctttctacatgcccaaacc 38570983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 47372789 - 47372697
Alignment:
Q  112 gtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| || |||||||| || | ||| |||||| ||| | ||||||| ||| ||||| |||||||  |||||| ||||||||||| |||||    
T  47372789 gtctacctctgcctctagtgatttgactaccctccgtctaatctactcttcttcctacaaaatccacgggtcttcgctctacatgcctaaacc 47372697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 1525876 - 1525693
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||  | ||| ||||||| ||||||    
T  1525876 aaacaacgccatagcgttctatcaaaaaccatgtctttctccaactcatttatctctggatccttcctaatagtttctcttgtagtttttctaggtctac 1525777  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaa 201  Q
    ||||||||||||| |||| |||| ||||||||||| ||||||||||  || || ||| |||  |||||||||||||||| ||||    
T  1525776 ccctacctctagtgatctgactctcctccatctgatctactctcctaactgcagaattcacgggtcttctctctacatgtccaa 1525693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 2713145 - 2712990
Alignment:
Q  49 tgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccat 148  Q
    ||||||||||||||||||| || |||||||||||| |||||||||||  ||||| ||||||| |||| |||||  ||||||| || | |||| |||||||    
T  2713145 tgtctttctccaactcattcatctctagatccttcttaatagtttctcttatagtttttctaggtcttcccctgactctagtgatttgactctcctccat 2713046  T
Q  149 ctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| |||||||||||  |||| |||||||| ||||||||||||||||||||||||    
T  2713045 ctgatctactctccttcatacagaatccacaggtcttctctctacatgcccaaacc 2712990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 21952570 - 21952403
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||||  ||||||||||   |||| ||||||| |||| |||||||||||||| ||     
T  21952570 tctatcaaaaaccatgtctttctccaacccattaatctctagatccttctcaatagtttctc--atagtttttctaggtcttcccctacctctagtgatt 21952473  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    | |||||||||||||||| ||| ||||||| ||| | |||||||| | |||||||||||||| |||||||    
T  21952472 tgactcccctccatctgatctattctccttactatagaatccacaggacttctctctacatgtccaaacc 21952403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 34734454 - 34734628
Alignment:
Q  28 atagtgatctatcaaaaaccatgtctttctccaactcatttatttctag--atccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    ||||| |||||||||||| |||||||||||||||||||||||| |||||  ||||||||||||||||| | |||||| |||||||  ||||||| |||||    
T  34734454 atagtaatctatcaaaaatcatgtctttctccaactcatttatctctagatatccttcataatagtttatcgtatagtttttctagatctacccgtacct 34734553  T
Q  126 ctagttatctaactcccctccatctgaactactctcctt--gctacataatccacatgtcttctctctacatgcc 198  Q
    | ||| |||| |||||||| ||| ||| ||| |||||||   ||||||||| ||||  |||||||||||||||||    
T  34734554 ccagtgatctgactccccttcatttgatctattctccttaatctacataattcacagatcttctctctacatgcc 34734628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 31635977 - 31636156
Alignment:
Q  25 gccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacc 124  Q
    ||||||||| |||| |||||||||||| ||||||||||||||| || |||| ||||||| | |||||||||   |||| |||||||  ||| |||||| |    
T  31635977 gccatagtgttctaccaaaaaccatgtgtttctccaactcattgatctctatatccttcttgatagtttctctaatagtttttctagatcttcccctatc 31636076  T
Q  125 tctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||| || | ||||||| |||||| | ||||||||||| |||||  ||||||  ||||||||||||||||||||||||    
T  31636077 tctagtgatttgactccccaccatctaatctactctccttactacaacatccacgggtcttctctctacatgcccaaacc 31636156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 11002471 - 11002612
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||| ||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||| ||  ||||||||| |  ||||| ||||||| ||||||    
T  11002471 aaacaatgccatagtgttctatcaaaaactatgcctttctccaactcatttatctctagatcgttactaatagtttgtcttatagtttttctaggtctac 11002570  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactc 159  Q
    ||| ||||||||| |||| |||||||| ||||||| ||||||    
T  11002571 cccaacctctagtgatctgactcccctacatctgatctactc 11002612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 14749534 - 14749353
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    ||||||||||| ||||||||||||||| | | | |||||||| || || |||||||||||| | |||||||||  ||||| ||||||| |||| || ||     
T  14749534 acgccatagtgttctatcaaaaaccatatttctatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttcctctg 14749435  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||| |||| || | |||||||||||||||| | ||||||||| | ||| |||||||| |||||||||||||||| |||||||    
T  14749434 cctttagtgatttgactcccctccatctgatcgactctccttacaacagaatccacaggtcttctctctacatgtccaaacc 14749353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 21916095 - 21915934
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||||| |||| ||||||  ||| | |||||| |||||| ||||| ||||||| |||    
T  21916095 tctatcaaaaataatgtatttctccaactcatttatctctagatccttcctaattgtttctcttatcgtttttctgtgtcta-ccctatctctagtgatc 21915997  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgc 197  Q
    | ||| |||||||| ||| ||||||||||  ||| ||||| |||| ||||| |||||||||||    
T  21915996 tgacttccctccatatgatctactctcctaactaaataatacacaagtcttttctctacatgc 21915934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 62 - 204
Target Start/End: Original strand, 38578615 - 38578757
Alignment:
Q  62 ctcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctc 161  Q
    ||||||||||||||||||||||||||||||||||  | ||| ||||||| |||||||||||| |||||| || | |||| |||| |||||| ||| |||     
T  38578615 ctcatttatttctagatccttcataatagtttctcttgtagtttttctaggtctacccctacatctagtgatttgactctcctcgatctgatctaatctg 38578714  T
Q  162 cttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||  ||| |||||| ||||||||||||| ||||||| ||||||    
T  38578715 ctaactatataatctacatgtcttctctttacatgctcaaacc 38578757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 33667667 - 33667555
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||||  ||||  ||||| ||||||| |||| |    
T  33667667 aaacaacgccaaagtgttctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaataacttctcttatagtttttctaggtcttc 33667568  T
Q  118 ccctacctctagt 130  Q
    |||||| ||||||    
T  33667567 ccctacatctagt 33667555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 37065699 - 37065632
Alignment:
Q  27 catagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttc 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  37065699 catagtgctctatcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttc 37065632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 10082817 - 10082975
Alignment:
Q  40 caaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaact 139  Q
    |||||||||||||||||||||||||||| || |||||||||||  || ||||||||  ||||| ||||||| ||||  ||||| |||| || || | |||    
T  10082817 caaaaaccatgtctttctccaactcattaatctctagatccttgttactagtttctcttatagtttttctaggtcttaccctatctctggtgatttgact 10082916  T
Q  140 cccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||      | |||||||| || ||||| |||||||| |||||||||||||||||| |||||    
T  10082917 cccctc------atctactctctttactacagaatccacaagtcttctctctacatgccgaaacc 10082975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 1935346 - 1935277
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||    
T  1935346 ccatagtgttctgtcaaaaaccttgtctttctccaactcatttatctctagatccttcctaatagtttct 1935277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 1174722 - 1174644
Alignment:
Q  17 taaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    ||||||||||||||||| |  ||||||||||||||||||||| |||||||| || |||||||||||| |||||| ||||    
T  1174722 taaacaacgccatagtgttacatcaaaaaccatgtctttctcaaactcattaatctctagatccttcttaatagattct 1174644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 14667964 - 14667819
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| ||| || ||| ||||  ||||| ||||||| |  | || || |||||||| || |||||    ||||||||| |||    
T  14667964 tccaactcattaatctctagatctttcttagtagcttctcttatagtttttctaggatttccgctgcctctagtgatataactataatccatctgatcta 14667865  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||    
T  14667864 ctctccttactacataatgtacatgtcttctctctacatgcccaaa 14667819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 28411908 - 28411835
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagt 91  Q
    |||||||||||||||| ||||||| ||| ||||| ||||||||| |||||||| |||||||||||| |||||||    
T  28411908 aaacaacgccatagtgttctatcagaaaacatgtttttctccaagtcatttatctctagatccttcctaatagt 28411835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 3442921 - 3442988
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcat 85  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||| |||||    
T  3442921 aaacgacgccatagtgttctatcaaaaaccatgtctttctccaattcattaatctctagatctttcat 3442988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 42199479 - 42199332
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| |||  |||||||| |   |||| ||||||| ||||  | || || ||||| || | ||| | |||||| ||| |||    
T  42199479 tccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttctctccccctagtgatttgactactctccatgtgatcta 42199380  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  42199379 ctctccttactacagaatctacatgtcttctctctacatgcccaaacc 42199332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 16134045 - 16134095
Alignment:
Q  42 aaaaccatgtctttctccaactcatttatttctagatccttcataatagtt 92  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  16134045 aaaaccatgtctttctccaaatcatttatctttagatccttcataatagtt 16134095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 7359434 - 7359490
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcc 198  Q
    ||||||||||| ||||||||||| ||||| |||| |||| |||||||||||||||||    
T  7359434 cctccatctgatctactctccttactacagaatctacatatcttctctctacatgcc 7359490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 16134289 - 16134388
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    ||||||||||| ||||||||||||||| |||| |||||||||||| ||   |||||||||  ||||| |||| ||| |||||||||||  ||||| ||||    
T  16134289 ttttctatgtcgacccctacctctagtgatctgactcccctccatatggtatactctcctaactaca-aatcaacaagtcttctctcttgatgcctaaac 16134387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 15489609 - 15489728
Alignment:
Q  85 taatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtct 184  Q
    |||||||||||  ||| | ||||||| |||| || || |||||||| ||  ||||  ||||||||| | |||||||||||  |||| |||| |||  |||    
T  15489609 taatagtttctcttattgtttttctaggtcttcctctgcctctagtgattcaactatcctccatctaatctactctccttaatacaaaatctacaaatct 15489708  T
Q  185 tctctctacatgcccaaacc 204  Q
    ||||||||||||||||||||    
T  15489709 tctctctacatgcccaaacc 15489728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 6788260 - 6788126
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| ||||| |  || ||| |||||||| |||  |||| ||||||| |||| || || |||||||| |||| ||   ||||||||||  | |    
T  6788260 tccaactcattaatttccaagtctttcctaatagttcctttgatagtttttctaggtcttcctctgcctctagtgatctgaccatcctccatctggtcga 6788161  T
Q  157 ctctccttgctacataatccacatgtcttctctct 191  Q
    |||||||| |||||||||||| |||| ||||||||    
T  6788160 ctctccttactacataatccatatgttttctctct 6788126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 21093879 - 21093799
Alignment:
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    |||||||| |||| |||  ||||||||||| |||||||| || ||||| ||||  || |||||| ||||||||||||||||    
T  21093879 cctctagtgatctgactatcctccatctgatctactctctttactacaaaatctccaagtcttccctctacatgcccaaac 21093799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 36123382 - 36123426
Alignment:
Q  158 tctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||    
T  36123382 tctccttgctacaaaatcaacacgtcttctctctacatgcccaaa 36123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 4460317 - 4460254
Alignment:
Q  141 ccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||| | ||| ||||| ||||| ||||||||  ||||||||| |||||||||||||    
T  4460317 ccctccatctgatcaactttccttactacagaatccacagttcttctctccacatgcccaaacc 4460254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 33667297 - 33667262
Alignment:
Q  169 cataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaacc 33667262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 38684708 - 38684533
Alignment:
Q  22 aacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccct 121  Q
    ||||||||| || ||||||||  ||||| | | | ||||||| ||| || |||||||| ||| ||| |||||||  | ||| ||||||| |||| ||  |    
T  38684708 aacgccataatgttctatcaagtaccatatttctatccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtcttccttt 38684609  T
Q  122 acctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgc 197  Q
    || |||||| ||   | |||||||||||| |  |||||||||| ||| | ||| |||| |||||||||||||||||    
T  38684608 acatctagtgattggaatcccctccatctaatatactctccttactatagaatacacaggtcttctctctacatgc 38684533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 43475432 - 43475286
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || ||| |||| ||| |||||||||||  || || |||||||||| |||   | ||| |||| |||| |||  ||||||||||| |||    
T  43475432 tccaactcattaatctctggatctttcttaatagtttctctta-agtttttctatgtttactttttcctatagtgatctgactatcctccatctgatcta 43475334  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| |||||  ||| ||| |||||||||||  || ||||||||    
T  43475333 ctctccttactacaacatctacaggtcttctctctgaatacccaaacc 43475286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 7678671 - 7678530
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| |||  ||||||||||  ||| | ||| |||  ||| || || |||||||| |||| |||  |||||||||     |    
T  7678671 tccaactcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcctctgcctctagtgatctgactatcctccatct-----a 7678577  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    |||||||| ||||| |||| ||||||||| |||||||| ||||||||    
T  7678576 ctctccttactacagaatctacatgtcttttctctacaagcccaaac 7678530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 12576951 - 12577061
Alignment:
Q  59 caactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactact 158  Q
    ||||||||| || |||||||| ||| ||||||||| |  | ||| ||||||| |||| || || |||||||| ||   ||| |||||||||||| |||||    
T  12576951 caactcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtcttcctctgcctctagtgataggactaccctccatctgatctact 12577050  T
Q  159 ctccttgctac 169  Q
    |||||| ||||    
T  12577051 ctccttactac 12577061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 17213289 - 17213231
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagttt 93  Q
    |||||||||||  ||||||||||| |||||||| || |||||||||||  |||||||||    
T  17213289 tctatcaaaaattatgtctttctctaactcattaatctctagatccttgttaatagttt 17213231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 6889220 - 6889039
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || ||||||| ||||||| | ||   |||||| ||| || |||| ||| ||| |||||||||||  ||||| ||||||| | || || ||     
T  6889220 acgccataatgttctatcataaaccatattttggcccaactaattaatctctaaatctttcctaatagtttctcttatagtttttctaggccttcctctt 6889121  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| |||  | | |||  ||||||||| |  || | ||||| | |||||||||||| |||||||||||||||| |||||||    
T  6889120 cctcaagtggtttgactatcctccatctaatttattgtccttaccacataatccacaagtcttctctctacatgtccaaacc 6889039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 6368052 - 6368136
Alignment:
Q  120 ctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||| |||||  |||||||||  |||||||||| ||||| || |   |||| |||| ||||||||| ||||||    
T  6368052 ctacctctagttatctgactccagtccatctgatttactctccttactacaaaacctgtatgttttctttctacatgctcaaacc 6368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 15369884 - 15369975
Alignment:
Q  55 tctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctcca 147  Q
    |||||||||||||||| | |||||  ||| |||||||||||  ||||  ||||||| ||||| || |||||||||| || | |||||||||||    
T  15369884 tctccaactcatttatctttagatttttcttaatagtttctcttatactttttctaggtcta-ccatacctctagtgatatgactcccctcca 15369975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 37065613 - 37065577
Alignment:
Q  166 ctacataatccacatgtcttctctctacatgcccaaa 202  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  37065613 ctacagaatccacatttcttctctctacatgcccaaa 37065577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 36514275 - 36514443
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| | |||| ||||  |||   |||||||||||| |||||||||||||| |      
T  36514275 tctatcaaaaaccatgtctttctccaattcatttatctctagatccttcttgatagcttctcttatgttttttctatgtct-cccctacctctagtgact 36514373  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    | ||||||||| |||||| ||||||||| | ||||| |||||||| ||| ||||||||||||||||||||    
T  36514374 tgactcccctctatctgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaacc 36514443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 5336150 - 5335966
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||||||||||  || |||||||||||||||||||||||||||||| || |||||||| ||| ||||||| |||   |||| ||||| | || | |    
T  5336150 aaacgacgccatagtattcaatcaaaaaccatgtctttctccaactcattaatctctagatcattcttaatagtatct--catagtttttcaaggttttc 5336053  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| ||| || | |||||||||||||| | ||||||||||  ||||| ||||||||  ||||||||||| |||||||||||    
T  5336052 ccctacctcgagtgatttgactcccctccatctaatctactctcctaactacagaatccacagttcttctctctatatgcccaaacc 5335966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 204
Target Start/End: Original strand, 18605231 - 18605382
Alignment:
Q  53 tttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctga 152  Q
    ||||| ||||||||||||||||| |||||||||||||||||||  | ||| ||||||| |||||||| ||| |||||| || | |||| |||| ||||||    
T  18605231 tttcttcaactcatttatttctaaatccttcataatagtttctcttgtagtttttctaggtctacccatacatctagtgatttgactctcctcgatctga 18605330  T
Q  153 actactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
     ||| ||||||  ||| |||||| ||||||||||||||||||||| ||||||    
T  18605331 tctaatctcctaactatataatctacatgtcttctctctacatgctcaaacc 18605382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 34745979 - 34745867
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||  ||| | ||||||| ||||||    
T  34745979 aaacaacgccatagcgttctatcaaaaaccatgtttttctccaactcatttatctttagatccttcctaatagtttctcttatggtttttctaggtctac 34745880  T
Q  118 ccctacctctagt 130  Q
    ||||| |||||||    
T  34745879 ccctaactctagt 34745867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 18637759 - 18637608
Alignment:
Q  53 tttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctga 152  Q
    ||||| ||||||||||||||||| |||||||||||||||||||  | ||  ||||||| |||||||| ||| |||||| || | |||| |||| ||||||    
T  18637759 tttcttcaactcatttatttctaaatccttcataatagtttctcttgtattttttctaggtctacccatacatctagtgatttgactctcctcgatctga 18637660  T
Q  153 actactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
     ||| ||||||  ||| |||||| ||||||||||||||||||||| ||||||    
T  18637659 tctaatctcctaactatataatctacatgtcttctctctacatgctcaaacc 18637608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 18651193 - 18651042
Alignment:
Q  53 tttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctga 152  Q
    ||||| ||||||||||||||||| |||||||||||||||||||  | ||  ||||||| |||||||| ||| |||||| || | |||| |||| ||||||    
T  18651193 tttcttcaactcatttatttctaaatccttcataatagtttctcttgtattttttctaggtctacccatacatctagtgatttgactctcctcgatctga 18651094  T
Q  153 actactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
     ||| ||||||  ||| |||||| ||||||||||||||||||||| ||||||    
T  18651093 tctaatctcctaactatataatctacatgtcttctctctacatgctcaaacc 18651042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 48735951 - 48736127
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||||||||||  ||| ||| |||||||||||||||| ||||||||||| |||||| || |  ||||||  |||  ||||| ||||| | |||||     
T  48735951 aaacgacgccatagtattct-tcataaaccatgtctttctcaaactcatttatctctagaaccctactaatagcctctcttatagtttttcaaggtctag 48736049  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatg 196  Q
    ||||||||||||| |||| |||||| ||||| ||| ||||||||||  |||||||||||||| |||||| |||||||||    
T  48736050 ccctacctctagtgatctgactccc-tccatttgatctactctcctaactacataatccacaggtcttcgctctacatg 48736127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 45558557 - 45558485
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||    
T  45558557 acgccatagtgttctatcaaaaaccatgtctttcaccaactcatttatctctagatccttcccaatagtttct 45558485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 28628022 - 28628169
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||| ||| ||| |||||||||||  ||||| ||||||| |||| || |||||||| || || | |||  |||||||| || |||    
T  28628022 tccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtcttcctctacctcttgtgatttgactatcctccatcggatcta 28628121  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| |||||||||| ||| || |||||| ||||||||||||||    
T  28628122 ctctccttactacataatctacaggttttctctttacatgcccaaacc 28628169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 1569231 - 1569063
Alignment:
Q  35 tctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatc 134  Q
    ||||||| ||||||| | ||  ||||||||||| || |||||||| ||| |||||||| ||  ||||| ||||||| | ||||| || |||||||  |||    
T  1569231 tctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagttactcttatagtttttctaggactacctctgcctctagcaatc 1569132  T
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    | |||  ||||||||||| ||||||||||| |||||  ||| ||| | ||||||||||||||| |||||    
T  1569131 tgactatcctccatctgatctactctcctttctacaacatctacacgacttctctctacatgctcaaac 1569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 25578091 - 25578027
Alignment:
Q  19 aacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttc 83  Q
    ||||||||||||||| | ||||||||||||||||||||||||| ||||| || ||||||||||||    
T  25578091 aacaacgccatagtgttttatcaaaaaccatgtctttctccaattcattaatctctagatccttc 25578027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 19119474 - 19119607
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||| ||| ||||||| | |||||||| ||||||||||||| |||||||| || ||||||||| || | |||||||||   |||| ||||||| |||| |    
T  19119474 aaacgacgtcatagtgttgtatcaaaagccatgtctttctcaaactcattgatctctagatccatcttgatagtttctctaatag-ttttctaggtcttc 19119572  T
Q  118 ccctacctctagttatctaactcccctccatctga 152  Q
    | ||||||||||| || | |||| |||||||||||    
T  19119573 cactacctctagtgatttgactctcctccatctga 19119607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 6420607 - 6420726
Alignment:
Q  85 taatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtct 184  Q
    ||||||| |||  ||||| |||| || ||||||| || |||||||| |||| |||  | | ||||||| ||||||||||| |||||  ||| ||| ||||    
T  6420607 taatagtatctcttatagtttttataggtctacctctgcctctagtgatctgactatcattcatctgatctactctccttactacagtatctacaagtct 6420706  T
Q  185 tctctctacatgcccaaacc 204  Q
    ||||||||||||||||||||    
T  6420707 tctctctacatgcccaaacc 6420726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 39812065 - 39812004
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    ||||||||||| ||||||||||| ||| | |||| |||| ||||||||||||||||||||||    
T  39812065 cctccatctgatctactctccttactatagaatctacatctcttctctctacatgcccaaac 39812004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 14593973 - 14593813
Alignment:
Q  29 tagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctcta 128  Q
    ||||| |||||||||||||||||| ||||||||        | ||||| | |||| |||||||||||  ||||| ||||||| |||| ||||||||||||    
T  14593973 tagtgttctatcaaaaaccatgtccttctccaa--------tctctaggttcttcttaatagtttctcttatagtttttctaggtcttcccctacctcta 14593882  T
Q  129 gttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    || || | ||||| ||| |||||| ||||| |      |||| |||||||| |||||||| |||||||||||||    
T  14593881 gtgatttgactcctctctatctgatctactat-----atacagaatccacaggtcttctcactacatgcccaaa 14593813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 40830393 - 40830337
Alignment:
Q  59 caactcatttatttctagatccttcataatagtttcttgtatagattttctatgtct 115  Q
    ||||||||| ||||||||||||||| |||||||||||  ||||||||||||| ||||    
T  40830393 caactcattaatttctagatccttcttaatagtttctcttatagattttctaggtct 40830337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 43791587 - 43791677
Alignment:
Q  115 tacccctacctctagttatctaactcccc-tccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||||| |||| ||||||| |||| | || |||||||| |  ||||| |||| ||| |||||||||| |||||||||||||    
T  43791587 tacccctacctctagtgatctgactccccctccaacggatctactctcttaactacagaatctacaggtcttctctccacatgcccaaacc 43791677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 47848838 - 47848720
Alignment:
Q  86 aatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtctt 185  Q
    ||||||||||  ||||| |||||||  ||| || || |||||||| |||  |||  ||||||||||| |||||||||||  |||| |||  ||| |||||    
T  47848838 aatagtttctcttatagtttttctagttcttcctctgcctctagtgatcagactatcctccatctgatctactctccttagtacagaatttacaagtctt 47848739  T
Q  186 ctctctacatgcccaaacc 204  Q
    ||||| |||||||||||||    
T  47848738 ctctcgacatgcccaaacc 47848720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 35713810 - 35713741
Alignment:
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||| |||| |||| || ||||||||||| ||||| |||  ||| ||||||||||||||||||||||||    
T  35713810 taactacccttcatcagatctactctccttactacaaaatgtacaagtcttctctctacatgcccaaacc 35713741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 1740927 - 1740847
Alignment:
Q  124 ctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| || | ||| |||||||||||| ||||||||||| ||||| ||||||||  ||| || ||||||| ||||||||    
T  1740927 ctctagtgatttgactaccctccatctgatctactctccttactacaaaatccacaattctcctatctacatacccaaacc 1740847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 45601700 - 45601597
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    |||||||| ||||||| ||| ||| | ||  ||||||||||| || |||||||| ||| |||| ||||||  ||||| ||||||| |||| || ||||||    
T  45601700 ccatagtgttctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtcttcctctacct 45601601  T
Q  126 ctag 129  Q
    ||||    
T  45601600 ctag 45601597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 48202879 - 48202938
Alignment:
Q  145 ccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| ||| ||||||||||| ||||| |||| ||| ||||||||||||||||| ||||||    
T  48202879 ccatatgatctactctccttactacagaatctacaagtcttctctctacatgcgcaaacc 48202938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 25579251 - 25579313
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| | ||||||| ||| | ||| |||| ||||||||||||||||||| ||||||||    
T  25579251 cctccatctaatctactcttcttaccacagaatctacatgtcttctctctacatccccaaacc 25579313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 28562455 - 28562589
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    |||||||| || || |||| ||| |||||||||||||||  ||||  ||||||| |||  || |||||||| || ||||||||   ||| |||||| |||    
T  28562455 tccaactcgttaatctctaaatctttcataatagtttctcttatattttttctaggtcatcctctacctcttgtaatctaactattctctatctgatcta 28562554  T
Q  157 ctctccttgctacataatccacatgtcttctctct 191  Q
     ||| ||| ||||| ||||  ||||||||||||||    
T  28562555 atcttcttactacaaaatctgcatgtcttctctct 28562589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 30633071 - 30633014
Alignment:
Q  144 tccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| | ||||||||||| ||||| ||||||||   ||||||||||||||||||||||    
T  30633071 tccatctaatctactctccttactacagaatccaca---cttctctctacatgcccaaacc 30633014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 42187566 - 42187516
Alignment:
Q  154 ctactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| |||||||||| ||| | ||||||| ||||||||||||||    
T  42187566 ctactctccttactacataatctacaggccttctctttacatgcccaaacc 42187516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 19262609 - 19262669
Alignment:
Q  143 ctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||| ||||||| ||| ||||| |||| ||| ||||||||||||||||| ||||||    
T  19262609 ctccatctgatctactcttcttactaca-aatctacaggtcttctctctacatgctcaaacc 19262669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 36101901 - 36102001
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    ||||||| |||| || || |||||||| |||| |||   |||||| ||| ||||||||| || |||| |||| | | ||||||||||||||| |||||||    
T  36101901 ttttctaggtcttcctctgcctctagtgatctgactattctccatatgatctactctccctgttacaaaatctataggtcttctctctacatccccaaac 36102000  T
Q  204 c 204  Q
    |    
T  36102001 c 36102001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 10617284 - 10617468
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||  ||||| ||||||| || | |    
T  10617284 aaacaacgccaaagtgttctatcaaaaaccatgtctttctccaactcattaatctctagatccttcttaatggtttctcttatagtttttctaggttttc 10617383  T
Q  118 ccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
      ||||||||||| || | |||||||||||| |||  ||||||||||  | || || ||||| ||||||| ||||||||| ||||||    
T  10617384 ttctacctctagtgatttgactcccctccatttga--tactctccttaatgcagaaaccacaggtcttctttctacatgctcaaacc 10617468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 7513439 - 7513600
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtc-ta 116  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||  ||||| || || | ||| |     
T  7513439 aaacaacgccatagtgttctatcaaaaaccatgtctttctccaactcattcatctctagatccttcctaaaagtttctcttatagtttatccaggtcttc 7513538  T
Q  117 cccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccac 178  Q
    ||||| |||||||| || | ||||||||| ||||||   ||||| ||| |||||||||||||    
T  7513539 cccctgcctctagtgatttgactcccctcaatctgattgactcttcttactacataatccac 7513600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 38974 - 38883
Alignment:
Q  39 tcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagt 130  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  ||||| ||||||| || |||||| |||||||||    
T  38974 tcaaaaaccatgtctttctccaactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtataccccgacctctagt 38883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 14315070 - 14315171
Alignment:
Q  38 atcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaa 137  Q
    |||||||| |||||||||||| || |||||||| | |||||||||| ||||||||| ||  |||  ||||||| ||||||||||||||||||| ||||||    
T  14315070 atcaaaaaacatgtctttctctaaatcatttatctttagatccttcgtaatagtttatttaata-tttttctaggtctacccctacctctagtcatctaa 14315168  T
Q  138 ctc 140  Q
    |||    
T  14315169 ctc 14315171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 9593797 - 9593942
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || ||||  || ||| |||||||||||  ||||  ||||||| |||| || |||||||| |  || | |||| ||||||||||| |||    
T  9593797 tccaactcattaatctctaagtctttcctaatagtttctcttataatttttctaggtcttcctctacctcttg--atttgactctcctccatctgatcta 9593894  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| ||| |||||  ||| ||||||||||||||||||||||||||||    
T  9593895 ctcttcttactacagcatctacatgtcttctctctacatgcccaaacc 9593942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 6906917 - 6907054
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    |||||||| || || |||||||| ||| ||||||| |||| ||||| ||||| |  ||| |  |||||||| || || | ||| |||| ||||||| |||    
T  6906917 tccaactcgttaatatctagatctttcttaatagtctctt-tatagcttttcaagatcttcatctacctctcgtgatttgactaccctgcatctgatcta 6907015  T
Q  157 ctctccttgctacataatccacatgtcttctctctacat 195  Q
    |||||||| ||||| |||| |||||||||||||||||||    
T  6907016 ctctccttactacaaaatctacatgtcttctctctacat 6907054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 8364783 - 8364635
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || ||||||| ||||||||| |   ||||||| ||| ||||||| ||| ||| |||||||||||  ||||| |||| || |||| |  ||     
T  8364783 acgccataatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttcttaatagtttctcttatagtttttttaggtcttcatctt 8364684  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacat 171  Q
    |||||||| |||| ||   ||||||||||| |||||||||| |||||||    
T  8364683 cctctagtgatctgacaatcctccatctgatctactctcctagctacat 8364635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 32913414 - 32913498
Alignment:
Q  120 ctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||||| || | ||| |||||||||| |  ||||||||||||||||||||| |||  |||| |||||||||| |||||||    
T  32913414 ctacctctagtgatttgactaccctccatctaatatactctccttgctacataatctacaactcttttctctacatggccaaacc 32913498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 31818724 - 31818591
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || || | | | ||| |||||||||||  ||||| ||||||| |||| | ||||||| |||| |||| ||| |||||||| ||| |||    
T  31818724 tccaactcattaatctccaaacctttcctaatagtttctcttatagtttttctaggtcttctcctacctttagtgatctcactaccctccatatgatcta 31818625  T
Q  157 ctctccttgctacataatccacatgtcttctctc 190  Q
    || ||||| || || |||| ||| ||||||||||    
T  31818624 ctttccttactgcagaatcaacaggtcttctctc 31818591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 6293564 - 6293622
Alignment:
Q  146 catctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||  ||||||||||  ||||||||| ||| || |||||||||||||||||||||    
T  6293564 catctgatttactctccttattacataatctacaggtgttctctctacatgcccaaacc 6293622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 34560 - 34677
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || ||||||| ||||||| | |   ||||||||||| || | |||||| ||| |||| ||||||  ||||| ||||||| |||| || ||     
T  34560 acgccataatgttctatcataaaccatatttcaatccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtcttcctctg 34659  T
Q  123 cctctagttatctaactc 140  Q
    |||||||| |||||||||    
T  34660 cctctagtgatctaactc 34677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 579526 - 579465
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    ||||||||||| | ||||||||| ||| |||||| ||| | ||||||||||||||| |||||    
T  579526 cctccatctgatcaactctccttactatataatctacaagccttctctctacatgctcaaac 579465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 5897585 - 5897524
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaac 203  Q
    |||||||| || ||||||||| | ||||| |||  |||| ||||||||||||||||||||||    
T  5897585 cctccatccgatctactctccatactacaaaatatacatatcttctctctacatgcccaaac 5897524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 5053625 - 5053577
Alignment:
Q  152 aactactctccttgctacataatccacatgtcttctctctacatgccca 200  Q
    ||||||||||||| |||||||||||||  ||||||||| || |||||||    
T  5053625 aactactctccttcctacataatccacgggtcttctctttatatgccca 5053577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 14389324 - 14389404
Alignment:
Q  124 ctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| |||| |||  ||||||||||| ||| ||||||| ||||| | || | | |||||||||||||||| |||||||    
T  14389324 ctctagtgatctgactatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaacc 14389404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 35199714 - 35199814
Alignment:
Q  60 aactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactc 159  Q
    |||||||| || |||||||| ||| |||||||||||| ||||  |||||||  |||  | ||| ||||||| || | ||| |||||||||||| ||||||    
T  35199714 aactcattaatctctagatctttcctaatagtttcttttataatttttctaattcttactctagctctagtgatatgactaccctccatctgatctactc 35199813  T
Q  160 t 160  Q
    |    
T  35199814 t 35199814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 11581668 - 11581490
Alignment:
Q  26 ccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacct 125  Q
    ||||| || ||||| ||||| ||||||||||| |||||||||||| | |||||| ||| |||||||||||  ||||| ||||||| |||| | | |||||    
T  11581668 ccataatgttctataaaaaatcatgtctttcttcaactcatttatctatagatctttcttaatagtttctcttatagtttttctaggtcttctcatacct 11581569  T
Q  126 ctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||| || | |||| ||| |||||||  |||||| ||| ||||||||| |||||||||||||||||||| ||||||||    
T  11581568 ctagtgatttgactcacctacatctgatgtactcttcttactacataattcacatgtcttctctctacatacccaaacc 11581490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 31454280 - 31454463
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||   ||||||||||   ||||| ||||||| |||  ||||||    
T  31454280 acgccatagtgttctatcaaaaaccatgtctttctccaattcattaatatctagatcctaattaatagtttcccttatagtttttctaggtcatccccta 31454379  T
Q  123 c--ctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |  |||||   || | |||||||||||||||| ||||||||||  ||||| ||||| ||| |||||||||||||||| ||||||    
T  31454380 catctctaaagatttgactcccctccatctgatctactctcctaactacagaatccgcatttcttctctctacatgcacaaacc 31454463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 37351628 - 37351453
Alignment:
Q  29 tagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctcta 128  Q
    ||||| |||| |||||||||| |||||||||| |||||| || |||||||| ||| | || ||||||   |||| ||||||| |||| ||||||||||||    
T  37351628 tagtgttctaacaaaaaccatatctttctccatctcattaatctctagatctttcttgattgtttctctaatagtttttctaggtcttcccctacctcta 37351529  T
Q  129 gttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    || || |  ||||| ||||||||| ||||||||||| ||||   || |||||| |||||||| |||||||||||||    
T  37351528 gtgatttgcctcccttccatctgatctactctccttactaccgcattcacatgacttctctccacatgcccaaacc 37351453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 43255078 - 43254977
Alignment:
Q  63 tcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctcc 162  Q
    |||||||| |||||||||||| | |||||||||   |||| ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  43255078 tcatttatctctagatccttcctgatagtttctctcatagtttttctaggtctacccctacctctagtgatctgacttccctccatctgaactactctcc 43254979  T
Q  163 tt 164  Q
    ||    
T  43254978 tt 43254977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 26990422 - 26990259
Alignment:
Q  41 aaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactc 140  Q
    ||||| ||||||||||||||||||||| || |||||||||||| | |||||||||   |||| ||||||| |||| |||||||||| ||| || | ||||    
T  26990422 aaaaaacatgtctttctccaactcattgatctctagatccttcttgatagtttctctaatagtttttctaggtcttcccctacctcgagtgatttgactc 26990323  T
Q  141 ccctccatctgaactactctcct---tgc--tacataatccacatgtcttctctctacatgccc 199  Q
    ||||||  |  | ||||||||||   | |  ||||  |||||||||||||||||||||||||||    
T  26990322 ccctccgaccaatctactctcctaaatacaatacaacatccacatgtcttctctctacatgccc 26990259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 27893321 - 27893213
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctac 117  Q
    |||||| ||||||||| ||| ||||||| ||||||||||||||||||||| || ||||| |||||  |||||||||||  |||||  |||||| |||| |    
T  27893321 aaacaatgccatagtgttctttcaaaaatcatgtctttctccaactcattaatctctaggtcctttttaatagtttctcttatagtctttctaggtcttc 27893222  T
Q  118 ccctacctc 126  Q
    | |||||||    
T  27893221 ctctacctc 27893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 21200741 - 21200594
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||||||| |||  |||||||| |   |||| ||||||| |||| || || || ||||| || | ||| | |||||| ||| |||    
T  21200741 tccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtcttcctctccccctagtgatttgactactctccatgtgatcta 21200642  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| || || |||| ||||||||||||||||||||||||||||    
T  21200641 ctctccttactgcagaatctacatgtcttctctctacatgcccaaacc 21200594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 39600770 - 39600917
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| |  |||| ||| ||| |||||||||||  ||||| ||||||| |||| || |||||||| |  |||| |||  |||| |||||| |||    
T  39600770 tccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtcttcctctacctcttgcaatctgactatcctcgatctgatcta 39600869  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| |||||| |||| ||| ||||||||| |||||||| |||||    
T  39600870 ctctcctcgctacagaatctacaggtcttctctttacatgccaaaacc 39600917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 3987566 - 3987519
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactca 65  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  3987566 aaacaacgccatagtgtcctatcaaaaaccatgtctttctccaactca 3987519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 204
Target Start/End: Original strand, 45289180 - 45289327
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || |||| ||| ||| |||||||||||  ||||| |||  ||  ||| || ||| |||| || ||||||||  ||||||||||| |||    
T  45289180 tccaactcattaatctctaaatctttcctaatagtttctcttatagttttcatagatcttcctctatctcttgtaatctaactatcctccatctgatcta 45289279  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| ||| ||||| |||| ||| || |||||||||| ||||||||||    
T  45289280 ctcttcttactacaaaatctacaagtgttctctctacgtgcccaaacc 45289327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 31453011 - 31453108
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtct 115  Q
    |||| ||||||||||  | | |||||||||||||||||| |||| ||||| || |||||||||||| | |||||||||| ||||| || |||| ||||    
T  31453011 aaacgacgccatagtattatgtcaaaaaccatgtctttcaccaattcattaatatctagatccttcttgatagtttcttatatagcttatctaggtct 31453108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 48508462 - 48508281
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    ||||||||||| ||||||| ||||||| | |   ||||||||||| |  |||| ||||||  |||| ||||||  ||||| ||| ||| |||| || |||    
T  48508462 acgccatagtgttctatcataaaccatatttgaatccaactcattgacctctaaatcctttctaatggtttctcttatagttttcctaggtcttcctcta 48508363  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||  | | || |||| ||||||||||| ||||||| ||| | |||  ||| ||  ||||||||||||||||||||||||    
T  48508362 cctcttttgacctgactctcctccatctgatctactcttcttacgacaacatctacgggtcttctctctacatgcccaaacc 48508281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 23534659 - 23534791
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| || ||||  || ||| |||||||||||  ||||  |||| |  |||| || ||||||||||| ||||||||  | ||||||||| |||    
T  23534659 tccaactcattaatctctaagtctttcctaatagtttctgttataatttttttgggtcttcctctacctctagtgatctaactatcatccatctgatcta 23534758  T
Q  157 ctctccttgctacataatccacatgtcttctct 189  Q
    |||||||| |||||||| ||||  |||||||||    
T  23534759 ctctccttactacataacccacgggtcttctct 23534791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 39235331 - 39235184
Alignment:
Q  57 tccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaacta 156  Q
    ||||||||||| | ||||| ||| ||| ||||||||| |  ||||| |||| |  |||| || ||||||||  | |||| |||  ||||||||||| |||    
T  39235331 tccaactcattaacttctaaatctttcctaatagtttatcctatagtttttttgggtcttcctctacctcttttgatctgactttcctccatctgatcta 39235232  T
Q  157 ctctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||| | | |||||  ||| ||| ||||||||||||||||||||||||    
T  39235231 ctcttcgtactacaacatctacaggtcttctctctacatgcccaaacc 39235184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 50249492 - 50249433
Alignment:
Q  145 ccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||| ||||||||||| ||| | |||| |||||||||| |||||||||||||||||    
T  50249492 ccatctgatctactctccttactaaagaatctacatgtcttcactctacatgcccaaacc 50249433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 42510071 - 42510237
Alignment:
Q  23 acgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttcttgtatagattttctatgtctaccccta 122  Q
    |||||||| || || |||| ||||||| | ||  ||||||||||||||||| | ||| ||| |||| ||||||   |||| ||||||| |||| ||  |     
T  42510071 acgccataatgttcaatcataaaccatattttggtccaactcatttatttccaaatctttcctaatggtttctctgatagtttttctaggtcttcctttg 42510170  T
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctct 189  Q
    |||||||| |||| |||  ||||||||||| ||||||||||| | ||| |||| | | |||||||||    
T  42510171 cctctagtgatctgactatcctccatctgatctactctccttaccacaaaatctataggtcttctct 42510237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 7278567 - 7278506
Alignment:
Q  143 ctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||| || ||||||||||||||||| |||| ||| || | |||||||||||||||||||    
T  7278567 ctccatccgatctactctccttgctacaaaatctacaggtttgctctctacatgcccaaacc 7278506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 31261061 - 31261177
Alignment:
Q  87 atagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttc 186  Q
    |||||||||  ||||| ||||||| |||| || || |||||||| || | ||| || ||||||||| |||||| | || ||||| |||| |||| |||||    
T  31261061 atagtttctcttatagtttttctaggtcttcctctgcctctagtgatttgactacc-tccatctgatctactcacattactacaaaatctacatatcttc 31261159  T
Q  187 tctctacatgcccaaacc 204  Q
    |||| |||||||||||||    
T  31261160 tctcaacatgcccaaacc 31261177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 19737115 - 19737043
Alignment:
Q  132 atctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| ||||||||||| ||||||| ||| |||||  ||| ||| ||||||||||| ||||| ||||||    
T  19737115 atctaactctcctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaacc 19737043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 19758018 - 19757946
Alignment:
Q  132 atctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    ||||||||| ||||||||||| ||||||| ||| |||||  ||| ||| ||||||||||| ||||| ||||||    
T  19758018 atctaactctcctccatctgatctactcttcttactacaacatctacaggtcttctctctgcatgctcaaacc 19757946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 22902944 - 22902864
Alignment:
Q  104 ttttctatgtctacccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtct 184  Q
    |||||||| ||| ||||||| |||||| || |||||||||||||||||| ||||| | ||| || |||||| |||| ||||    
T  22902944 ttttctatatcttcccctacatctagtgatttaactcccctccatctgatctacttttcttactgcataattcacaggtct 22902864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 46568214 - 46568154
Alignment:
Q  142 cctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaa 202  Q
    ||||||| ||| ||||||||||| ||||||| | |||||| ||| ||||||||||||||||    
T  46568214 cctccatgtgatctactctccttactacatagttcacatgacttttctctacatgcccaaa 46568154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 3987164 - 3987126
Alignment:
Q  112 gtctacccctacctctagttatctaactcccctccatct 150  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  3987164 gtctacccctacctctagtcatctgactcccctccatct 3987126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 36304105 - 36304027
Alignment:
Q  123 cctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaa 201  Q
    |||||||| |||| ||| ||||| |||||| ||| ||||||| ||| |  ||| ||| |||||||||||||||||||||    
T  36304105 cctctagtaatctgactaccctctatctgatctattctccttactaaagcatctacaggtcttctctctacatgcccaa 36304027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 44443371 - 44443432
Alignment:
Q  135 taactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatg 196  Q
    ||||| ||||||| |||| ||||||||||| ||||| |||| | | ||||||||||||||||    
T  44443371 taactaccctccaactgagctactctccttactacagaatctaaaagtcttctctctacatg 44443432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 1059 - 1178
Alignment:
Q  74 tagatccttcataatagtttcttgtatagattttctatgtctacccctacctctagttatctaactcccc-tccatctgaactactctccttgctacata 172  Q
    |||||||||| |||||||||||  || || ||||||| ||| ||||||||||| ||| |||||||||||| |||||||||  || ||||||  ||||| |    
T  1059 tagatccttcctaatagtttctcttacagtttttctaggtccacccctacctcaagtcatctaactccccttccatctgatttattctcctaactacaaa 1158  T
Q  173 atccacatgtcttctctcta 192  Q
    || || || |||||||||||    
T  1159 attcatatatcttctctcta 1178  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 44017 - 44104
Alignment:
Q  117 cccctacctctagttatctaactcccctccatctgaactactctccttgctacataatccacatgtcttctctctacatgcccaaacc 204  Q
    |||||||||||||| |||| |||  |||||||||   ||||||||||| ||| | ||||   | ||||||||||||||||||||||||    
T  44017 cccctacctctagtgatctgactatcctccatctagtctactctccttactagagaatctgaaggtcttctctctacatgcccaaacc 44104  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 163244 - 163320
Alignment:
Q  18 aaacaacgccatagtgatctatcaaaaaccatgtctttctccaactcatttatttctagatccttcataatagtttct 95  Q
    |||| ||| ||||||| |||||||||| | ||| ||||||| ||||||||||| | || || ||||||||||||||||    
T  163244 aaacgacgtcatagtgttctatcaaaatcaatg-ctttctcaaactcatttatctttaaatacttcataatagtttct 163320  T

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