View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_high_76 (Length: 202)

Name: NF13295_high_76
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_high_76
NF13295_high_76
[»] chr6 (6 HSPs)
chr6 (50-188)||(17457139-17457277)
chr6 (74-136)||(423637-423699)
chr6 (87-135)||(12411131-12411179)
chr6 (66-136)||(5944824-5944894)
chr6 (70-136)||(8507136-8507202)
chr6 (66-108)||(15614662-15614704)
[»] chr4 (3 HSPs)
chr4 (66-129)||(7096085-7096148)
chr4 (57-136)||(14854587-14854666)
chr4 (87-136)||(10199214-10199263)
[»] chr1 (7 HSPs)
chr1 (70-136)||(16756064-16756130)
chr1 (70-136)||(10840999-10841065)
chr1 (57-127)||(17600578-17600648)
chr1 (70-135)||(31733784-31733849)
chr1 (82-128)||(16552491-16552537)
chr1 (70-127)||(36982346-36982403)
chr1 (70-130)||(40019229-40019289)
[»] chr8 (6 HSPs)
chr8 (74-141)||(12958182-12958249)
chr8 (73-128)||(35206990-35207045)
chr8 (66-136)||(4321593-4321663)
chr8 (89-128)||(11363259-11363298)
chr8 (74-136)||(33404379-33404441)
chr8 (90-130)||(36498322-36498362)
[»] chr7 (8 HSPs)
chr7 (70-136)||(7190452-7190518)
chr7 (50-136)||(28537372-28537458)
chr7 (57-141)||(19477329-19477413)
chr7 (74-110)||(38304970-38305006)
chr7 (57-136)||(8839361-8839440)
chr7 (100-136)||(2371130-2371166)
chr7 (74-106)||(2871072-2871104)
chr7 (87-127)||(27484159-27484199)
[»] chr2 (5 HSPs)
chr2 (87-136)||(3772653-3772702)
chr2 (66-128)||(13154012-13154074)
chr2 (89-127)||(13426422-13426460)
chr2 (71-136)||(993736-993801)
chr2 (96-136)||(16532937-16532977)
[»] chr3 (5 HSPs)
chr3 (86-142)||(38088611-38088667)
chr3 (70-130)||(54877821-54877881)
chr3 (74-136)||(25224681-25224743)
chr3 (50-136)||(48204384-48204470)
chr3 (73-129)||(28967278-28967334)
[»] scaffold0068 (1 HSPs)
scaffold0068 (66-127)||(37156-37217)
[»] chr5 (1 HSPs)
chr5 (74-130)||(22188093-22188149)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 17457139 - 17457277
Alignment:
Q  50 acgttgatgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttgtgtatctttgcat 149  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  17457139 acgttgatgcatgccgaagactgaattcaaactcataactttggttaagttaaaagagatctgtgtcatctcatctaagcactcttgtatatctttgcat 17457238  T
Q  150 aaacacgttttatacttttgatttattatttaaaaagtg 188  Q
    ||| || ||||| || |||||||||||||||||||||||    
T  17457239 aaatacattttaaacctttgatttattatttaaaaagtg 17457277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 423699 - 423637
Alignment:
Q  74 attcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||||||| ||||||||||||  ||||||||||||||  |||||||||||||| ||||||    
T  423699 attcaaacccaaaaccttggttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 12411179 - 12411131
Alignment:
Q  87 accttggttaagttagaagagatctgtgtcatctcatctaagcactctt 135  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  12411179 accttggttaagttagaagagacctgttccatctcatctaagcactctt 12411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 5944894 - 5944824
Alignment:
Q  66 aagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||||||| ||| ||  ||||||||||||||| |||||| | || |||||| || ||||||||||||    
T  5944894 aagactgaattcgaactcaggaccttggttaagttaaaagagacccgtatcatcttatataagcactcttg 5944824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 8507136 - 8507202
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||| |||||| ||||||  ||||| ||||||| ||| |||||||||||||||| | ||||||    
T  8507136 ctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaacgctcttg 8507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 15614662 - 15614704
Alignment:
Q  66 aagactgaattcaaacccataaccttggttaagttagaagaga 108  Q
    |||||||||||| ||||||| || |||||||||||||||||||    
T  15614662 aagactgaattcgaacccatgacattggttaagttagaagaga 15614704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 7096148 - 7096085
Alignment:
Q  66 aagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagc 129  Q
    ||||||| ||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||    
T  7096148 aagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtcatctcatctaagc 7096085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 14854666 - 14854587
Alignment:
Q  57 tgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||  ||| ||| |||| |||||| ||||||||||||| ||||||||| | ||  |||||||||||||| ||||||    
T  14854666 tgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaagcgctcttg 14854587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 10199214 - 10199263
Alignment:
Q  87 accttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||||||||||| |||||| | ||  |||||||||||||||||||||    
T  10199214 accttggttaagttataagagacccgttccatctcatctaagcactcttg 10199263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 16756130 - 16756064
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||||||||||| ||||||||||||| ||||||||||| ||  |||||||||||||| ||||||    
T  16756130 ctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgctcttg 16756064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 10841065 - 10840999
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||  |||||| || |||||||||| ||||||||| |||| ||||||||||||||| ||||||    
T  10841065 ctgaatttgaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaagcgctcttg 10840999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 17600578 - 17600648
Alignment:
Q  57 tgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaa 127  Q
    |||||||  ||| |||||||| ||||||  |||||||||||| ||||||||| | ||||||||||||||||    
T  17600578 tgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaa 17600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 31733784 - 31733849
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactctt 135  Q
    |||||||| |||||| ||| ||||||||||||||||| |  ||||| ||||||||||| |||||||    
T  31733784 ctgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaacactctt 31733849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 16552537 - 16552491
Alignment:
Q  82 ccataaccttggttaagttagaagagatctgtgtcatctcatctaag 128  Q
    |||||| |||| ||||| || ||||||||||||||||||||||||||    
T  16552537 ccataatcttgattaagctataagagatctgtgtcatctcatctaag 16552491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 36982403 - 36982346
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaa 127  Q
    |||||||| |||||   |||||||||||  ||||||||| ||||||||||||||||||    
T  36982403 ctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaa 36982346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 40019289 - 40019229
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagca 130  Q
    |||||||| |||||| ||||||| |||||||||||||||   || |||| |||||||||||    
T  40019289 ctgaattcgaacccaaaaccttgattaagttagaagagactcgtatcatttcatctaagca 40019229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 12958182 - 12958249
Alignment:
Q  74 attcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttgtgtat 141  Q
    |||||||||||| |||||||||||| |||||||||   ||  ||||||||||||||||||||| ||||    
T  12958182 attcaaacccatgaccttggttaagctagaagagactagttccatctcatctaagcactcttgggtat 12958249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 35207045 - 35206990
Alignment:
Q  73 aattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaag 128  Q
    ||||| |||||| || |||||||||||||||||||| |||| ||||||||||||||    
T  35207045 aattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag 35206990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 4321593 - 4321663
Alignment:
Q  66 aagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||| ||||||||||| ||||||  ||||| ||||||| |||| ||||||||||||||| | ||||||    
T  4321593 aagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaaccctcttg 4321663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 11363298 - 11363259
Alignment:
Q  89 cttggttaagttagaagagatctgtgtcatctcatctaag 128  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  11363298 cttggttaagttagaagagatttgtttcatctcatctaag 11363259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 33404379 - 33404441
Alignment:
Q  74 attcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||||||| || |||||| || || ||||||  ||||||||||||||||||| ||||||    
T  33404379 attcaaacccatgactttggttgagctataagagacttgtgtcatctcatctaagcgctcttg 33404441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 36498362 - 36498322
Alignment:
Q  90 ttggttaagttagaagagatctgtgtcatctcatctaagca 130  Q
    |||||||||||||||||||| ||| |||| |||||||||||    
T  36498362 ttggttaagttagaagagatttgtttcatatcatctaagca 36498322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 7190452 - 7190518
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||||||| |||||||||||||||| |||||||||| | |  |||||||||||| | ||||||    
T  7190452 ctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgctcttg 7190518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 28537458 - 28537372
Alignment:
Q  50 acgttgatgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||| |||||||  ||| ||| |||| |||||| ||||||| ||||||||||||||| | ||  |||||||||||||| ||||||    
T  28537458 acgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaagcgctcttg 28537372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 19477329 - 19477413
Alignment:
Q  57 tgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttgtgtat 141  Q
    |||||||  ||| ||| ||||||||||| ||||||||||||| ||||||||| | ||  |||||||||||| | |||||| ||||    
T  19477329 tgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgctcttgggtat 19477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 38304970 - 38305006
Alignment:
Q  74 attcaaacccataaccttggttaagttagaagagatc 110  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38304970 attcaaacccagaaccttggttaagttagaagagatc 38305006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 8839361 - 8839440
Alignment:
Q  57 tgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||  ||| ||| |||| ||||||  |||||||||||| ||||||||| | || ||||||||||||||| ||||||    
T  8839361 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttg 8839440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 2371166 - 2371130
Alignment:
Q  100 tagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||||| | |||||||||||||||||||||||||    
T  2371166 tagaagagaaccgtgtcatctcatctaagcactcttg 2371130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 2871072 - 2871104
Alignment:
Q  74 attcaaacccataaccttggttaagttagaaga 106  Q
    ||||||||||| |||||||||||||||||||||    
T  2871072 attcaaacccagaaccttggttaagttagaaga 2871104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 27484159 - 27484199
Alignment:
Q  87 accttggttaagttagaagagatctgtgtcatctcatctaa 127  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  27484159 accttggttaagctagaagagacttgtgtcatctcatctaa 27484199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 3772653 - 3772702
Alignment:
Q  87 accttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||||||| ||||||||||  ||||||||||||||||||| ||||||    
T  3772653 accttggttaaattagaagagacttgtgtcatctcatctaagcgctcttg 3772702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 13154012 - 13154074
Alignment:
Q  66 aagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaag 128  Q
    ||||||| |||||||| || ||| | |||||||||||||||||  | ||||||||||||||||    
T  13154012 aagactgtattcaaactcaaaacttgggttaagttagaagagacttatgtcatctcatctaag 13154074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 13426422 - 13426460
Alignment:
Q  89 cttggttaagttagaagagatctgtgtcatctcatctaa 127  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  13426422 cttggttaagttagaagagatttgtgtaatctcatctaa 13426460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 993801 - 993736
Alignment:
Q  71 tgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    ||||||| ||||||  |||||||||||| || ||||||   |||||||||||||||||| ||||||    
T  993801 tgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaagcgctcttg 993736  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 16532977 - 16532937
Alignment:
Q  96 aagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||||||||||  |||||||||||||||| |||||||||    
T  16532977 aagttagaagagacatgtgtcatctcatctatgcactcttg 16532937  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 38088667 - 38088611
Alignment:
Q  86 aaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttgtgtatc 142  Q
    ||||||||||||| ||||||||| | || ||||||||||||||| |||||| |||||    
T  38088667 aaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgggtatc 38088611  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 54877881 - 54877821
Alignment:
Q  70 ctgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagca 130  Q
    |||||||||||| || ||||||||||||||||||||||| |  |||||  |||||||||||    
T  54877881 ctgaattcaaactcaaaaccttggttaagttagaagagacccatgtcaaatcatctaagca 54877821  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 25224743 - 25224681
Alignment:
Q  74 attcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||| ||||||  |||||||||||| ||||||||| | || ||||||||||||||| ||||||    
T  25224743 attcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttg 25224681  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 48204384 - 48204470
Alignment:
Q  50 acgttgatgcatgcggaagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagcactcttg 136  Q
    |||||| |||||||  ||| ||| |||| ||||||  |||||||||||| |||||||||   ||  |||||||||||||||||||||    
T  48204384 acgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaagcactcttg 48204470  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 28967278 - 28967334
Alignment:
Q  73 aattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagc 129  Q
    ||||| ||| ||| ||||||||||||||||||||||   |||||||||||| |||||    
T  28967278 aattcgaacacatgaccttggttaagttagaagagactcgtgtcatctcatgtaagc 28967334  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 37156 - 37217
Alignment:
Q  66 aagactgaattcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaa 127  Q
    ||||||| |||||||||||  || || ||||| ||||||||||| |||||| ||||||||||    
T  37156 aagactggattcaaacccacgactttagttaaattagaagagatatgtgtcgtctcatctaa 37217  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 22188093 - 22188149
Alignment:
Q  74 attcaaacccataaccttggttaagttagaagagatctgtgtcatctcatctaagca 130  Q
    |||||||||||  |||||||||||||||||||||||  ||   ||||||||||||||    
T  22188093 attcaaacccaataccttggttaagttagaagagattcgttcaatctcatctaagca 22188149  T

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