View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_1 (Length: 903)

Name: NF13295_low_1
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_1
NF13295_low_1
[»] chr1 (9 HSPs)
chr1 (136-765)||(29060819-29061442)
chr1 (799-891)||(29061476-29061568)
chr1 (607-692)||(39332586-39332673)
chr1 (649-698)||(3374577-3374626)
chr1 (467-511)||(49491903-49491947)
chr1 (467-596)||(3374356-3374485)
chr1 (651-698)||(19393908-19393955)
chr1 (467-544)||(39332387-39332464)
chr1 (645-698)||(41034786-41034839)
[»] chr8 (8 HSPs)
chr8 (516-607)||(3322112-3322203)
chr8 (645-691)||(399518-399564)
chr8 (649-698)||(3072281-3072330)
chr8 (649-698)||(8831017-8831066)
chr8 (652-698)||(14295245-14295291)
chr8 (649-698)||(27786554-27786603)
chr8 (558-607)||(28225640-28225689)
chr8 (469-518)||(36206436-36206485)
[»] chr3 (6 HSPs)
chr3 (645-698)||(18028331-18028384)
chr3 (555-607)||(31163017-31163069)
chr3 (645-692)||(51525157-51525204)
chr3 (646-688)||(29347125-29347167)
chr3 (645-698)||(3367243-3367296)
chr3 (467-536)||(51524920-51524989)
[»] chr2 (6 HSPs)
chr2 (467-535)||(18693154-18693222)
chr2 (645-698)||(18811481-18811534)
chr2 (645-698)||(13502883-13502936)
chr2 (467-544)||(14296248-14296325)
chr2 (467-536)||(18811703-18811772)
chr2 (649-698)||(31092619-31092668)
[»] scaffold0531 (2 HSPs)
scaffold0531 (645-704)||(10559-10617)
scaffold0531 (467-535)||(10312-10380)
[»] chr5 (1 HSPs)
chr5 (645-692)||(15188267-15188314)
[»] chr4 (5 HSPs)
chr4 (645-704)||(19852784-19852842)
chr4 (462-535)||(16593768-16593841)
chr4 (645-704)||(16593531-16593589)
chr4 (468-535)||(19852538-19852605)
chr4 (467-601)||(37050054-37050188)
[»] chr7 (4 HSPs)
chr7 (467-506)||(19407871-19407910)
chr7 (649-704)||(33191577-33191632)
chr7 (646-688)||(7543857-7543899)
chr7 (646-688)||(19407645-19407687)


Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 136 - 765
Target Start/End: Original strand, 29060819 - 29061442
Alignment:
Q  136 agagggggttaggtagctcatctgatttgagtgttaaagagtagcatatcatgatattaatagtaacaacctcattgtagaacacaacgtatcataatcc 235  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29060819 agagggggtcaggtagctcatctgatttgagtgttaaagagtagcatatcatgatattaatagtaacaacctcattgtagaacacaacgtatcataaccc 29060918  T
Q  236 aacaatggttatgagttcgactggaaatgtagttagggggtttgctattactcatgtcattgcatgtctctgaatgcaacgttacaactcttgagcgaga 335  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  29060919 aacaatggttatgagttcgactggaaatgtatttagggggtttgctattactcatgtccttgcatgtctctgaatgcaacgttacaactctcgagcgaga 29061018  T
Q  336 gtcttgctattcatttttgtcctatctaaaagattagtctctataattacacgtaaatgatattcaattnnnnnnnnnngcattgtacaaaagaagaagc 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||          | |||||||||   |||||||    
T  29061019 gtcttgctattcatttttgtcctatctaaaagattagtctctataattacacataaatgatattcaatt--aaaaaaaagtattgtacaa---aagaagc 29061113  T
Q  436 atatgagcaaagcgaagccgactagcacttggccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggtt 535  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29061114 atatgagcaaagcaaagccgactagcacttggccgcaatgagaacccgtgcctaaaagggtacctccaaagttgccttgacagctacaaagtagttggtt 29061213  T
Q  536 ttattgcaaaagtttagtgagaaatagcaatcattttgtacaaattttcatagagatggtagtcttgtagcatagatttggattttcttttcatatgttc 635  Q
    ||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  29061214 ttattgcaaaagtttaacgagaaataacaatcattttgtacaaactttcatagagatggtagtcttgtagcacagatttggattttcttttcataggttc 29061313  T
Q  636 cccactattactctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgatcgaaaattnnnnnnnnnnnngctattatggaaaaata 735  Q
     ||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||  ||||||            | |||| ||||||||||    
T  29061314 tccactatgactctcttggattggtttaggtatctcatgtcttttatattttagtgcattgataaaaaattaaaaaaaaaaaag-tattgtggaaaaata 29061412  T
Q  736 agaattacaacgtggattgaacttataaac 765  Q
    ||||||||||||||||||||||||||||||    
T  29061413 agaattacaacgtggattgaacttataaac 29061442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 799 - 891
Target Start/End: Original strand, 29061476 - 29061568
Alignment:
Q  799 gatagtgaaagcaatcaaaacactttcaaggatcatcattactctctttattcttgactttgacaatatcaagcagtgcgggtaactacatct 891  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29061476 gatagggaaagcaatcaaaacactttcaaggatcatcattactctctttattctttactttgacaatatcaagcagtgcgggtaactacatct 29061568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 607 - 692
Target Start/End: Original strand, 39332586 - 39332673
Alignment:
Q  607 atagatttggattttcttttcatatgttccccactatt--actctgttgtattggttcaggtatctcatgtcttttatattttagtgc 692  Q
    |||||| ||||||||||||||||| |||  |||||||   |||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  39332586 atagatctggattttcttttcataagttatccactatatgactctgttgtattgattcaggcatctcctgtcttttatattttagtgc 39332673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 649 - 698
Target Start/End: Original strand, 3374577 - 3374626
Alignment:
Q  649 tgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  3374577 tgttgtattggttcaggcatcttatgtcttttatattttagtgctttgat 3374626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 511
Target Start/End: Complemental strand, 49491947 - 49491903
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgcc 511  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||    
T  49491947 gccggaatgaggacccgtgcccaaaagggtacctccaaagttgcc 49491903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 596
Target Start/End: Original strand, 3374356 - 3374485
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggttttattgcaaaagtttagtgagaaatagcaat 566  Q
    ||||||||||| ||  ||||| ||||||||| |||||||| |||| ||  ||||||| | |||||||||| ||||||  || ||||  || |||| ||||    
T  3374356 gccggaatgaggacatgtgcccaaaagggtagctccaaagctgccttggaagctacagaatagttggtttaattgcattagattagctagtaatatcaat 3374455  T
Q  567 cattttgtacaaattttcatagagatggta 596  Q
    |||||| | | || ||||||||||| ||||    
T  3374456 cattttcttccaactttcatagagagggta 3374485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 698
Target Start/End: Complemental strand, 19393955 - 19393908
Alignment:
Q  651 ttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    ||||||||||||||  ||||| |||||||||||||||||||| |||||    
T  19393955 ttgtattggttcagacatctcctgtcttttatattttagtgctttgat 19393908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 544
Target Start/End: Original strand, 39332387 - 39332464
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggttttattgcaa 544  Q
    |||| |||||| ||||||||| |||||||||||| ||||  || | || |||||||| | || |||||||||||||||    
T  39332387 gccgaaatgaggacccgtgcccaaaagggtaccttcaaaaatgacttggcagctacagaataattggttttattgcaa 39332464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 698
Target Start/End: Complemental strand, 41034839 - 41034786
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    |||||| |||||||||||||   |||| |||||||||||||||||||| |||||    
T  41034839 actctggtgtattggttcagacctctcctgtcttttatattttagtgctttgat 41034786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 516 - 607
Target Start/End: Original strand, 3322112 - 3322203
Alignment:
Q  516 cagctacaaagtagttggttttattgcaaaagtttagtgagaaatagcaatcattttgtacaaattttcatagagatggtagtcttgtagca 607  Q
    |||||||| | |||||||||||||| ||||||  |||  | ||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  3322112 cagctacagaatagttggttttattacaaaagaatagctacaaatatcaatcatattgtacaaactttcatagagatggtagtcttgtagca 3322203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 645 - 691
Target Start/End: Complemental strand, 399564 - 399518
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtg 691  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  399564 actctgttgtattggttcaggcatctcctgtcttttatattttagtg 399518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 649 - 698
Target Start/End: Complemental strand, 3072330 - 3072281
Alignment:
Q  649 tgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  3072330 tgttgtattggttcaggcatctcctgtcttttatattttagtgctttgat 3072281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 698
Target Start/End: Complemental strand, 8831066 - 8831017
Alignment:
Q  649 tgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    ||||||||||||||||  ||||| |||||||||||||||||||| |||||    
T  8831066 tgttgtattggttcagacatctcctgtcttttatattttagtgctttgat 8831017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 652 - 698
Target Start/End: Complemental strand, 14295291 - 14295245
Alignment:
Q  652 tgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    ||||||||||||||  |||| |||||||||||||||||||| |||||    
T  14295291 tgtattggttcaggcctctcctgtcttttatattttagtgctttgat 14295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 698
Target Start/End: Complemental strand, 27786603 - 27786554
Alignment:
Q  649 tgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    |||||||||||||||||  |||| ||| |||||||||||||||| |||||    
T  27786603 tgttgtattggttcaggcctctcctgtattttatattttagtgctttgat 27786554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 607
Target Start/End: Complemental strand, 28225689 - 28225640
Alignment:
Q  558 aatagcaatcattttgtacaaattttcatagagatggtagtcttgtagca 607  Q
    |||| |||| |||| ||||||| ||||||||||| |||||||||||||||    
T  28225689 aatatcaataatttagtacaaactttcatagagagggtagtcttgtagca 28225640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 518
Target Start/End: Complemental strand, 36206485 - 36206436
Alignment:
Q  469 cggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacag 518  Q
    ||||||||| || |||||||||||| || |||||||||||||| ||||||    
T  36206485 cggaatgaggactcgtgcctaaaagagttcctccaaagttgccttgacag 36206436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 645 - 698
Target Start/End: Complemental strand, 18028384 - 18028331
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  18028384 actctgttgtattggttcaggcatctcatatcttttatattttagtgctttgat 18028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 607
Target Start/End: Complemental strand, 31163069 - 31163017
Alignment:
Q  555 agaaatagcaatcattttgtacaaattttcatagagatggtagtcttgtagca 607  Q
    ||||||| |||||||||||||| || ||||||| ||| |||||||||||||||    
T  31163069 agaaatatcaatcattttgtaccaactttcataaagaaggtagtcttgtagca 31163017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 692
Target Start/End: Original strand, 51525157 - 51525204
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgc 692  Q
    ||||||||||||||| |||||  |||| ||||||||||||||||||||    
T  51525157 actctgttgtattggctcaggcctctcctgtcttttatattttagtgc 51525204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 646 - 688
Target Start/End: Original strand, 29347125 - 29347167
Alignment:
Q  646 ctctgttgtattggttcaggtatctcatgtcttttatatttta 688  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  29347125 ctctgttgtattggttcaggcctctcctgtcttttatatttta 29347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 698
Target Start/End: Complemental strand, 3367296 - 3367243
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    |||||||||||||| |||| | ||||| ||| |||||||||||||||| |||||    
T  3367296 actctgttgtattgattcatgcatctcctgttttttatattttagtgctttgat 3367243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 51524920 - 51524989
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggttt 536  Q
    ||||||||||| ||||||||| |||||||  ||||||||| | || |||||| | |||| ||||||||||    
T  51524920 gccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatgcaaaatagttggttt 51524989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 18693154 - 18693222
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggtt 535  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| | |||||| |||||| |||||||||    
T  18693154 gccggaatgaggacctgtgcctaaaagggttcctccaaagttgtcttgacagatacaaaatagttggtt 18693222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 645 - 698
Target Start/End: Complemental strand, 18811534 - 18811481
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||| |||||    
T  18811534 actctgttgtattggttcaggcctctcctgtcttttatattttagtgctttgat 18811481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 645 - 698
Target Start/End: Original strand, 13502883 - 13502936
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    |||||||||||||| |||| | ||||| |||||||||||||||||||| |||||    
T  13502883 actctgttgtattgattcatgcatctcctgtcttttatattttagtgctttgat 13502936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 544
Target Start/End: Complemental strand, 14296325 - 14296248
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggttttattgcaa 544  Q
    ||||||||||| || |||| | |||||||||||||||||| |||| || ||| |||| | |||||||||  |||||||    
T  14296325 gccggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaattgcaa 14296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 536
Target Start/End: Complemental strand, 18811772 - 18811703
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggttt 536  Q
    ||||||||||| ||||||||| |||||||  ||||||||| | || |||||| |||| | ||||||||||    
T  18811772 gccggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatacagaatagttggttt 18811703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 698
Target Start/End: Original strand, 31092619 - 31092668
Alignment:
Q  649 tgttgtattggttcaggtatctcatgtcttttatattttagtgcattgat 698  Q
    |||||||||||||||||| ||||  ||||||||||||||| ||| |||||    
T  31092619 tgttgtattggttcaggtctctcccgtcttttatattttattgctttgat 31092668  T

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Target: scaffold0531 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 645 - 704
Target Start/End: Original strand, 10559 - 10617
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgatcgaaaa 704  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||    
T  10559 actctgttgtattggttcaggcatctcctgtctttt-tattttagtgctttgatcaaaaa 10617  T

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Target: scaffold0531; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 10312 - 10380
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggtt 535  Q
    ||||||||||| ||||||||||||||| ||| |||||||| || | || |||||||| | |||||||||    
T  10312 gccggaatgaggacccgtgcctaaaagagtaactccaaagctgtcttggcagctacataatagttggtt 10380  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 645 - 692
Target Start/End: Original strand, 15188267 - 15188314
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgc 692  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  15188267 actctgttgtattcgttcaggcatctcttgtcttttatattttagtgc 15188314  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 645 - 704
Target Start/End: Original strand, 19852784 - 19852842
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgatcgaaaa 704  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||| ||||    
T  19852784 actctgttgtattggttcaggcatctcctgtctttt-tattttagtgctttgatcaaaaa 19852842  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 16593841 - 16593768
Alignment:
Q  462 acttggccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggtt 535  Q
    |||| ||||||||||||||||||||| ||||| ||| | ||||||||| | || |||||||| | |||||||||    
T  16593841 acttagccggaatgagaacccgtgcccaaaagagtaacgccaaagttgtcttggcagctacataatagttggtt 16593768  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 704
Target Start/End: Complemental strand, 16593589 - 16593531
Alignment:
Q  645 actctgttgtattggttcaggtatctcatgtcttttatattttagtgcattgatcgaaaa 704  Q
    ||||||||||||||||||||  ||||| |||||||| ||||||||||| |||||| ||||    
T  16593589 actctgttgtattggttcagacatctcctgtctttt-tattttagtgctttgatcaaaaa 16593531  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 19852538 - 19852605
Alignment:
Q  468 ccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggtt 535  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| | || ||||| || | |||||||||    
T  19852538 ccggaatgagaacccgtgcccaaaagagtaactccaaagttgtcttggcagcttcataatagttggtt 19852605  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 467 - 601
Target Start/End: Original strand, 37050054 - 37050188
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaagttgccctgacagctacaaagtagttggttttattgcaaaagtttagtgagaaatagcaat 566  Q
    ||||||||||| || |||||| ||||||||||||||||||  ||  ||| || |||||| |||||||||  ||||||| ||  ||    | |||| ||||    
T  37050054 gccggaatgaggactcgtgcccaaaagggtacctccaaagccgctttgagagatacaaaatagttggttcaattgcaacagaatatatgggaataccaat 37050153  T
Q  567 cattttgtacaaattttcatagagatggtagtctt 601  Q
      |||||| ||||||||||||||||  ||||||||    
T  37050154 acttttgttcaaattttcatagagagagtagtctt 37050188  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 19407910 - 19407871
Alignment:
Q  467 gccggaatgagaacccgtgcctaaaagggtacctccaaag 506  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  19407910 gccggaatgaggacccgtgcccaaaagggtacctccaaag 19407871  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 704
Target Start/End: Original strand, 33191577 - 33191632
Alignment:
Q  649 tgttgtattggttcaggtatctcatgtcttttatattttagtgcattgatcgaaaa 704  Q
    ||||||||||||||| | ||||| ||||||||||||||| |||| |||||| ||||    
T  33191577 tgttgtattggttcatgcatctcttgtcttttatattttcgtgctttgatcaaaaa 33191632  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 646 - 688
Target Start/End: Complemental strand, 7543899 - 7543857
Alignment:
Q  646 ctctgttgtattggttcaggtatctcatgtcttttatatttta 688  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  7543899 ctctgttgtattggttcaggcctctcctgtcttttatatttta 7543857  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 646 - 688
Target Start/End: Complemental strand, 19407687 - 19407645
Alignment:
Q  646 ctctgttgtattggttcaggtatctcatgtcttttatatttta 688  Q
    ||||||||||||||||||||  |||| ||||||||||||||||    
T  19407687 ctctgttgtattggttcaggcctctcctgtcttttatatttta 19407645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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