View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_12 (Length: 599)

Name: NF13295_low_12
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_12
NF13295_low_12
[»] chr1 (10 HSPs)
chr1 (61-590)||(10604619-10605151)
chr1 (65-113)||(30762018-30762066)
chr1 (68-130)||(10785093-10785155)
chr1 (65-130)||(4431062-4431127)
chr1 (65-130)||(49820543-49820608)
chr1 (19-51)||(10605169-10605201)
chr1 (68-127)||(27905821-27905880)
chr1 (68-115)||(34159045-34159092)
chr1 (65-130)||(7451890-7451955)
chr1 (65-106)||(32882774-32882815)
[»] chr4 (5 HSPs)
chr4 (68-130)||(42719543-42719605)
chr4 (66-127)||(19814847-19814908)
chr4 (61-131)||(21983500-21983569)
chr4 (61-130)||(28967262-28967330)
chr4 (65-122)||(52009220-52009277)
[»] chr3 (4 HSPs)
chr3 (473-554)||(32604288-32604369)
chr3 (68-116)||(46358014-46358062)
chr3 (68-130)||(32010174-32010236)
chr3 (68-130)||(50518721-50518783)
[»] chr6 (4 HSPs)
chr6 (68-122)||(3880244-3880298)
chr6 (65-130)||(13423749-13423814)
chr6 (65-113)||(4043346-4043394)
chr6 (62-130)||(16180483-16180550)
[»] chr8 (5 HSPs)
chr8 (69-130)||(12197708-12197769)
chr8 (69-130)||(12442136-12442197)
chr8 (65-108)||(2613176-2613219)
chr8 (61-125)||(8843739-8843802)
chr8 (65-121)||(17656365-17656421)
[»] chr7 (5 HSPs)
chr7 (61-126)||(3478739-3478804)
chr7 (69-130)||(33719352-33719413)
chr7 (68-130)||(6726051-6726113)
chr7 (61-130)||(42532884-42532953)
chr7 (61-130)||(47456699-47456767)
[»] chr5 (3 HSPs)
chr5 (65-130)||(8297857-8297922)
chr5 (61-121)||(25992397-25992457)
chr5 (65-130)||(23426687-23426752)
[»] chr2 (5 HSPs)
chr2 (61-130)||(15361111-15361179)
chr2 (68-122)||(4975140-4975194)
chr2 (68-122)||(4993048-4993102)
chr2 (90-130)||(13337637-13337677)
chr2 (66-130)||(40470777-40470840)
[»] scaffold0063 (1 HSPs)
scaffold0063 (86-130)||(58515-58559)
[»] scaffold0002 (1 HSPs)
scaffold0002 (65-105)||(426557-426597)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 61 - 590
Target Start/End: Complemental strand, 10605151 - 10604619
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaatatctacctcatcactatannnnnnnn-agac 159  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||         ||||    
T  10605151 gaatcagcaaattttatttaacaatcagatccctgctcaagacgaatagagactggtgaaacagagaatatatacctcatcactatatttttttttagac 10605052  T
Q  160 accaataacatgttgagacttcgctagggttagtaagtcaaaacaccaatgaaatgttgagactctagttggtggaggccaaacccttcactacacaact 259  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  10605051 accaataacatgttgagacttcattagggttagtaagtcaaaacaccaatgacatgttgagactctagttggttgaggccaaacccttcactacacaact 10604952  T
Q  260 aataacacatgttttataatatatagttttgcatgtgaaaaaccattatttggacaa--taattattttaaaagaaacttatttgtctaaattaatcatg 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  10604951 aataacacatgttttataatatatagttttgcatgtgaaaaaccattatttggacaaaataattattttaaaagaaacttatttgtctaaattaatcatg 10604852  T
Q  358 ctataaaatatgaaacaaaagtacaccttttctatcattctttttctatgctagctataatattttaatttaatgtttattgatcatcaacttattatgt 457  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  10604851 ctataaaatatcaaacaaaagtacatcttttctatcattctttttctatgctagctataatattttaatttaatgtttattgatcatcaacttatactgt 10604752  T
Q  458 tttgttgcatcttcttttacagaaaaattaggccaaagatgacactccctatctttttgaggctagcggttcttggtttccttgagtaaggctcttcaat 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10604751 tttgttgcatcttcttttacagaaaaattaggccaaagatgacactccctatctttttgaggctagcggttcttggtttccttgagtaaggctcttcaat 10604652  T
Q  558 tcctctcctccatttaattatcactatattctt 590  Q
    |||||||||||||||||||||||||||||||||    
T  10604651 tcctctcctccatttaattatcactatattctt 10604619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 30762018 - 30762066
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagac 113  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  30762018 cagcaaattttatttaaaaatcagatccttgctcaagacgaacagagac 30762066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 10785093 - 10785155
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||  || |||| |||||||    
T  10785093 caaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaata 10785155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 4431127 - 4431062
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||||||||||| ||||| || |||  ||||||||||||||||||||| ||||||  |||||||    
T  4431127 cagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaata 4431062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 49820608 - 49820543
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||||||||||||||||||| ||||  ||||||||||  ||||||| | ||||| |||||||||    
T  49820608 cagcaaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaata 49820543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 10605201 - 10605169
Alignment:
Q  19 gaaaggtccttattattcttatctacctcatca 51  Q
    |||||||||||||||||||||||||||||||||    
T  10605201 gaaaggtccttattattcttatctacctcatca 10605169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 27905880 - 27905821
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagaga 127  Q
    |||| |||||| ||||| ||||||| ||||||||| ||||||||||| ||||| ||||||    
T  27905880 caaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagaga 27905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 34159092 - 34159045
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagacca 115  Q
    |||| |||||| ||||||||||||| |||||||||| |||||||||||    
T  34159092 caaaatttattaaacaatcagatccctgctcaagacaaatagagacca 34159045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 7451890 - 7451955
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||||| ||||| |||||  |||||  ||||||||||||| ||||||| ||||||| |||||||    
T  7451890 cagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaata 7451955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 32882815 - 32882774
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaa 106  Q
    |||||||||||||| |||||||| |||| |||||||||||||    
T  32882815 cagcaaattttattaaacaatcacatccctgctcaagacgaa 32882774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 42719605 - 42719543
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| |||||||    
T  42719605 caaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaata 42719543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 19814847 - 19814908
Alignment:
Q  66 agcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagaga 127  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||  | |||||||||    
T  19814847 agcaaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagaga 19814908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 21983500 - 21983569
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaatat 131  Q
    |||||||||||||||||| || |||||||||| ||||||||||||| |||||||  ||||| ||| |||||    
T  21983500 gaatcagcaaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatat 21983569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 28967330 - 28967262
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||||||||||| || |||||   ||||||||||||| ||||| | |||||||||| ||||    
T  28967330 gaatcagcaaattttatttaa-aaccagatttctgctcaagacgaacagagatcggtgaaacagataata 28967262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 52009277 - 52009220
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 122  Q
    |||||||||||||| ||| | ||||||| ||| ||||||||||||||| | |||||||    
T  52009277 cagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaac 52009220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 473 - 554
Target Start/End: Complemental strand, 32604369 - 32604288
Alignment:
Q  473 tttacagaaaaattaggccaaagatgacactccctatctttttgaggctagcggttcttggtttccttgagtaaggctcttc 554  Q
    ||||||||||||  |||||||||||||| ||||| |||||  ||||| ||| ||  ||||||||||||||||||||||||||    
T  32604369 tttacagaaaaacaaggccaaagatgactctccccatcttcctgaggatagtggcacttggtttccttgagtaaggctcttc 32604288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 46358014 - 46358062
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccag 116  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||    
T  46358014 caaattttatttaacaaccagatccctgctcaagacgaacagagaccag 46358062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 32010236 - 32010174
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||||||| ||||||| | ||||||||||| ||||| | ||||  |||||||||    
T  32010236 caaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaata 32010174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 50518721 - 50518783
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||| ||||||  ||||| ||||||||||||| ||||||  ||||||| |||||||    
T  50518721 caaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaata 50518783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 3880244 - 3880298
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 122  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||    
T  3880244 caaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaac 3880298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 13423814 - 13423749
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||||||||||||||| || || ||| | ||||||||||| |||||||  |||||| |||||||    
T  13423814 cagcaaattttatttaaccattaggtccctcctcaagacgaacagagacctttgaaactgagaata 13423749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 4043346 - 4043394
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagac 113  Q
    ||||||||||||||||| ||||| |||  ||||||||||||||| ||||    
T  4043346 cagcaaattttatttaaaaatcaaatctctgctcaagacgaataaagac 4043394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 16180483 - 16180550
Alignment:
Q  62 aatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||||||| || |||||||||  ||||||||||||| | ||| | |||||||||| ||||    
T  16180483 aatcagcaaattttattaaa-aatcagatctctgctcaagacgaacaaagatcggtgaaacagataata 16180550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 12197708 - 12197769
Alignment:
Q  69 aaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||||||  ||||| |||||||||||||||||||| | ||||| |||||||||    
T  12197708 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaata 12197769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 12442136 - 12442197
Alignment:
Q  69 aaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||||||  ||||| |||||||||||||||||||| | ||||| |||||||||    
T  12442136 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaata 12442197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 2613176 - 2613219
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaata 108  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  2613176 cagcaaattttatttaacaatcagatccctactcaagacgaata 2613219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 8843739 - 8843802
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacaga 125  Q
    |||||||||||||||||| || ||||| |||| | ||||||||||| ||||||| ||||||||||    
T  8843739 gaatcagcaaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaacaga 8843802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 17656365 - 17656421
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaa 121  Q
    |||||||||||||| ||||||||| ||| |||||| ||  |||||||||| ||||||    
T  17656365 cagcaaattttattaaacaatcaggtccctgctcatgagcaatagagaccggtgaaa 17656421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 3478804 - 3478739
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagag 126  Q
    |||||||||||||||||||||||| ||||||| || ||||||| || ||||||| |||||| ||||    
T  3478804 gaatcagcaaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaaagagag 3478739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 33719413 - 33719352
Alignment:
Q  69 aaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||||||| ||||| ||||||| ||||||||||||| ||||| | ||||||| |||||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaata 33719352  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 6726051 - 6726113
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||| ||||| ||||||  ||||||||||||| ||||| | ||||||| |||||||    
T  6726051 caaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaata 6726113  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 42532884 - 42532953
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||| ||||||||||  |||| || |||| ||||||||||||| ||||||| ||| ||| |||||||    
T  42532884 gaatcagtaaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaata 42532953  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 47456699 - 47456767
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||| ||||||||||| || || ||||||  ||||||||||||| ||||||| |||||||||| ||||    
T  47456699 gaatcaacaaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaata 47456767  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 8297922 - 8297857
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||||||||||| ||||||||||||  | ||||||||||| ||||||| ||||||| |||||||    
T  8297922 cagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaata 8297857  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 25992457 - 25992397
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaa 121  Q
    |||||||||||| ||||| ||||| ||||||  ||||||||||||| ||||||| ||||||    
T  25992457 gaatcagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaa 25992397  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 23426752 - 23426687
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||||||| ||||||||   ||||||||| ||| ||||||| ||||  |||||||||    
T  23426752 cagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaata 23426687  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 15361179 - 15361111
Alignment:
Q  61 gaatcagcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    |||||| ||||||||||| || ||||| |||| ||||||||||||||||||||  |||||||||| ||||    
T  15361179 gaatcaacaaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataata 15361111  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 4975194 - 4975140
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 122  Q
    ||||||||||||||| ||||| ||  ||||||||||||| |||||| ||||||||    
T  4975194 caaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaac 4975140  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 4993102 - 4993048
Alignment:
Q  68 caaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaac 122  Q
    ||||||||||||||| ||||| ||  ||||||||||||| |||||| ||||||||    
T  4993102 caaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaac 4993048  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 13337677 - 13337637
Alignment:
Q  90 tccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||| ||||||||||| ||||||| |||||||||||||||    
T  13337677 tccatactcaagacgaacagagaccggtgaaacagagaata 13337637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 40470840 - 40470777
Alignment:
Q  66 agcaaattttatttaacaatcagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||||||||| || |||||||| | ||||||||||||| ||||| ||||  |||||||||||    
T  40470840 agcaaattttattaaa-aatcagattcttgctcaagacgaacagagatcagtttaacagagaata 40470777  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 58559 - 58515
Alignment:
Q  86 cagatccatgctcaagacgaatagagaccagtgaaacagagaata 130  Q
    ||||||| ||||||||||||| ||||||| |||||||||| ||||    
T  58559 cagatccctgctcaagacgaaaagagaccggtgaaacagataata 58515  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 426557 - 426597
Alignment:
Q  65 cagcaaattttatttaacaatcagatccatgctcaagacga 105  Q
    ||||||||||||||||| |||||||||| | ||||||||||    
T  426557 cagcaaattttatttaaaaatcagatccctactcaagacga 426597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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