View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_14 (Length: 575)
Name: NF13295_low_14
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 22 - 518
Target Start/End: Complemental strand, 8134730 - 8134222
Alignment:
| Q |
22 |
gccgacacgtacatgagaaagaacattgacacatcgcatatacgcagataataatttgagnnnnnnngttattgaatgaaactacatgcatagatgttgt |
121 |
Q |
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| T |
8134730 |
gccgacacgtacatgagaaagaatattgacacatcgcatatacatcgataataatttgagaaaaaaagttattgaatgaaactacatgcgtggatgttgt |
8134631 |
T |
|
| Q |
122 |
gttagtatccaacactagcatgtctcggacaccagacatatattcaatcagaaatctcggtactaaatatggtcaacaaacaagctacaggtgtgtgact |
221 |
Q |
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| T |
8134630 |
gttagtatccaacactagcatgtctcggacaccagacatatattcaatcagaaatctcggtaataaatatggtcaacaaacaagctacaggtgtgtgact |
8134531 |
T |
|
| Q |
222 |
taacatgatttgcaccatcgcaggttgctacatgaacttggacggttacaaccacaagacaaagatgcgg------------aaacacacttatgataaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | |
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| T |
8134530 |
taacatgatttgcaccatcgcaggttgctacatgaacttggacggttacaaccacgagacaaagatgcggcaatcaagcggataacacacttatgataca |
8134431 |
T |
|
| Q |
310 |
attacgaggtttaatagcagcctaattaagccttaacatcgacctttttaagttaaatgttccccaaaattaacatttttcttagacattaccgtgaatt |
409 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8134430 |
attacgaggtttaacagcagcctaattaagccttaacatcaactttttcaagtt-aatgttccccaaaattaacatttttcttagacattaccgtgaatt |
8134332 |
T |
|
| Q |
410 |
gaaggcaccaaca-aacgatcaatttataataaaacacaacacacaacagtacgtccaagaattatacacatcataattattcataaacctaaaactacc |
508 |
Q |
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| T |
8134331 |
gaaggcaccaacacaacgatcaatttataataaaacacaacacacaacagtacgtccaagaattatacacatcataattattcataaacctaaaactacc |
8134232 |
T |
|
| Q |
509 |
accttataac |
518 |
Q |
| |
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|||||||||| |
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| T |
8134231 |
accttataac |
8134222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 566
Target Start/End: Complemental strand, 8134202 - 8134167
Alignment:
| Q |
531 |
gaataatgtacataatcatgatcgcatgagaataat |
566 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
8134202 |
gaataatgtatataatcatgatcgcatgagaataat |
8134167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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