View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_15 (Length: 568)

Name: NF13295_low_15
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_15
NF13295_low_15
[»] chr4 (9 HSPs)
chr4 (339-550)||(53004109-53004318)
chr4 (10-148)||(53003798-53003936)
chr4 (211-270)||(32202505-32202564)
chr4 (211-270)||(53003980-53004040)
chr4 (217-270)||(30387164-30387218)
chr4 (209-270)||(5091633-5091694)
chr4 (233-270)||(33108720-33108757)
chr4 (233-270)||(39844009-39844046)
chr4 (215-270)||(789558-789614)
[»] chr3 (6 HSPs)
chr3 (211-269)||(20924095-20924154)
chr3 (212-270)||(42964274-42964333)
chr3 (214-270)||(49893433-49893490)
chr3 (220-269)||(11308244-11308293)
chr3 (214-270)||(48725373-48725430)
chr3 (215-270)||(33140987-33141043)
[»] chr8 (9 HSPs)
chr8 (214-270)||(30675600-30675656)
chr8 (211-270)||(9253926-9253986)
chr8 (209-270)||(27988521-27988583)
chr8 (209-270)||(28045823-28045885)
chr8 (209-270)||(28626870-28626932)
chr8 (233-270)||(16890527-16890564)
chr8 (214-270)||(20831580-20831637)
chr8 (214-270)||(34228784-34228841)
chr8 (211-270)||(21595948-21596008)
[»] chr1 (12 HSPs)
chr1 (214-270)||(9266755-9266812)
chr1 (214-270)||(45431380-45431437)
chr1 (211-270)||(8472938-8472998)
chr1 (220-270)||(19031848-19031899)
chr1 (212-270)||(36446350-36446409)
chr1 (213-270)||(43286824-43286882)
chr1 (214-270)||(5694423-5694480)
chr1 (214-270)||(15227841-15227898)
chr1 (214-270)||(29683298-29683355)
chr1 (214-270)||(51065775-51065832)
chr1 (214-270)||(51368812-51368869)
chr1 (214-269)||(47010096-47010152)
[»] scaffold0113 (1 HSPs)
scaffold0113 (211-270)||(41021-41081)
[»] chr6 (5 HSPs)
chr6 (211-270)||(3026033-3026093)
chr6 (214-270)||(392198-392255)
chr6 (214-270)||(4215797-4215854)
chr6 (214-270)||(32929535-32929592)
chr6 (215-270)||(2350754-2350810)
[»] scaffold0190 (1 HSPs)
scaffold0190 (214-270)||(14998-15055)
[»] chr7 (4 HSPs)
chr7 (214-270)||(7689227-7689284)
chr7 (214-270)||(24438579-24438636)
chr7 (226-269)||(525114-525158)
chr7 (233-269)||(28262129-28262165)
[»] chr5 (3 HSPs)
chr5 (230-270)||(12506398-12506439)
chr5 (214-270)||(34650860-34650917)
chr5 (215-270)||(10956053-10956109)
[»] chr2 (8 HSPs)
chr2 (214-270)||(4381897-4381954)
chr2 (214-270)||(6580291-6580348)
chr2 (214-270)||(20553033-20553090)
chr2 (214-270)||(22068347-22068404)
chr2 (214-270)||(27856423-27856480)
chr2 (214-270)||(30486312-30486369)
chr2 (215-270)||(561546-561602)
chr2 (211-270)||(32860204-32860263)
[»] scaffold1266 (1 HSPs)
scaffold1266 (215-270)||(394-450)
[»] scaffold0263 (1 HSPs)
scaffold0263 (211-270)||(19609-19669)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 339 - 550
Target Start/End: Original strand, 53004109 - 53004318
Alignment:
Q  339 gttatcgaaatttaatgcaaattgatcaaataatccaaactgaaaagaaactataacagcactttgaaatctttaaattaatagtatcgcatnnnnnnnn 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            
T  53004109 gttatcgaaatttaatgcaaattgatcaaataatccaaactgaaaagaaactataatagcactttgaaatctttaaattaatagtatcgcataaaaaaaa 53004208  T
Q  439 nnnnngaacaccctaccacgtccttcattattttcaatacttttctttgatagaaattgctttacatggccatcgatcattaatgccaaaagaacaacaa 538  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53004209 gaa--gaacaccctaccacgtccttcattattttcaatacttttctttgatagaaattgctttacatggccatcgatcattaatgccaaaagaacaacaa 53004306  T
Q  539 caatgatgcttt 550  Q
    ||||||||||||    
T  53004307 caatgatgcttt 53004318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 53003798 - 53003936
Alignment:
Q  10 attatactcactttcagacagatacaacaaggtgaaaaatgtactaaaattgaaagaggtcaaaagtgaaataaaatagattcttttaggtagactcaat 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  53003798 attatactcactttcagactgatacaacaaggtgaaaaatgtactaaaattgaaagagatcaaaagtgaaatcaaagagattcttttaggtagactcaat 53003897  T
Q  110 atttgctctaggcagtttgatagtcatttactcaatgta 148  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53003898 atttgctctaggcagtttgatagtcatttactcaatgta 53003936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 32202505 - 32202564
Alignment:
Q  211 ggacactgattaagtatatcataaaaggaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| |||||||| |||||||||||||||||||||   |||||||||||||||||||||    
T  32202505 ggacattgattaagcatatcataaaaggaattattatcataaaaggaaactgtttttgac 32202564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 53003980 - 53004040
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||| | ||||||||    
T  53003980 ggacactgattaagcatatcataaaagagaattattattttaaaaggaaattatttttgac 53004040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 30387164 - 30387218
Alignment:
Q  217 tgattaagtatatcataaaa-ggaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||| ||||||||||| |||||||||||  |||||||||||||||||||||    
T  30387164 tgattaagcatatcataaaaaggaattattaccataaaaggaaactgtttttgac 30387218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 5091633 - 5091694
Alignment:
Q  209 ccggacactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||| ||||| ||| ||||||||| |||||||||| |||||||||||||||| ||||    
T  5091633 ccggacactggttaagcata-cataaaagggaattattactataaaaggaaactgtttatgac 5091694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 33108720 - 33108757
Alignment:
Q  233 aaaaggaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||||  |||||||||||||||||||||    
T  33108720 aaaaggaattattaccataaaaggaaactgtttttgac 33108757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 39844046 - 39844009
Alignment:
Q  233 aaaaggaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||||  |||||||||||||||||||||    
T  39844046 aaaaggaattattaccataaaaggaaactgtttttgac 39844009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 789558 - 789614
Alignment:
Q  215 actgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  789558 actggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 789614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 20924154 - 20924095
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttga 269  Q
    |||||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||    
T  20924154 ggacactggttaagtataccataaaagagaattattaccttaaaaggaaactgtttttga 20924095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 42964274 - 42964333
Alignment:
Q  212 gacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||||| ||||| |||||||||||| ||||||||||| |||||| ||||||||||||||    
T  42964274 gacactggttaagcatatcataaaagtgaattattactataaaagaaaactgtttttgac 42964333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 49893490 - 49893433
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||||||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  49893490 cactgattaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 49893433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 11308244 - 11308293
Alignment:
Q  220 ttaagtatatcataaaaggaattattactttaaaaggaaactgtttttga 269  Q
    ||||| ||| ||||||||||||||||||  |||||||||||| |||||||    
T  11308244 ttaagcataccataaaaggaattattaccataaaaggaaactatttttga 11308293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 48725430 - 48725373
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  48725430 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 48725373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 33141043 - 33140987
Alignment:
Q  215 actgattaagtatatcataaaa-ggaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||| ||||||||||| |||||||||||  |||||| |||||| |||||||    
T  33141043 actgattaagcatatcataaaagggaattattaccataaaagaaaactgcttttgac 33140987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 30675600 - 30675656
Alignment:
Q  214 cactgattaagtatatcataaaaggaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||||||||||||  |||||||||||||||||||||    
T  30675600 cactggttaagcataccataaaaggaattattaccataaaaggaaactgtttttgac 30675656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 9253926 - 9253986
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| || ||||| ||| |||||||| ||||||||||| |||||||||||||||||||||    
T  9253926 ggacattggttaagcataccataaaagagaattattactataaaaggaaactgtttttgac 9253986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 27988521 - 27988583
Alignment:
Q  209 ccggacactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||| ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  27988521 ccgggcactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 27988583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 28045823 - 28045885
Alignment:
Q  209 ccggacactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||| ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  28045823 ccgggcactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 28045885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 28626932 - 28626870
Alignment:
Q  209 ccggacactgattaagtatatcataaaa-ggaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||||| ||| ||||||| ||||||||||   ||||| |||||||||||||||    
T  28626932 ccggacactgattaagcataccataaaagggaattattatcataaaaagaaactgtttttgac 28626870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 16890527 - 16890564
Alignment:
Q  233 aaaaggaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||||  |||||||||||||||||||||    
T  16890527 aaaaggaattattaccataaaaggaaactgtttttgac 16890564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 20831580 - 20831637
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||||||||| ||| |||||||| ||||||||||  ||||||||||||| |||||||    
T  20831580 cactgattaagcataccataaaagagaattattaccataaaaggaaactgcttttgac 20831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 34228841 - 34228784
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  34228841 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 34228784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 21596008 - 21595948
Alignment:
Q  211 ggacactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||||||| ||||| ||| ||||||||| ||||| |||  |||||||||||||||||||||    
T  21596008 ggacactggttaagcataccataaaagggaattaataccataaaaggaaactgtttttgac 21595948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 9266755 - 9266812
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||||||| |||||||| ||||||||||  |||||||||||||||||||||    
T  9266755 cactggttaagtataccataaaagcgaattattaccataaaaggaaactgtttttgac 9266812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 45431437 - 45431380
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| |||||||||||||||||| ||||||||||  |||||||||||| ||||||||    
T  45431437 cactggttaagtatatcataaaagagaattattaccataaaaggaaactatttttgac 45431380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 8472938 - 8472998
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||| ||||||||| |||||||| ||||||||| | ||||| |||||||||||||||    
T  8472938 ggacactggttaagtataccataaaagagaattattattataaaatgaaactgtttttgac 8472998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 19031848 - 19031899
Alignment:
Q  220 ttaagtatatcataaaaggaa-ttattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||||||||||||| |||||||  |||||||||||||||||||||    
T  19031848 ttaagcatatcataaaaggaaattattaccataaaaggaaactgtttttgac 19031899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 36446350 - 36446409
Alignment:
Q  212 gacactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||||| ||||  ||| ||||||||| |||||||||| |||||||||||||||||||||    
T  36446350 gacactggttaaacataccataaaagggaattattactataaaaggaaactgtttttgac 36446409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 43286882 - 43286824
Alignment:
Q  213 acactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||| ||||| ||| |||||||| ||||||||||| |||||||||||| ||||||||    
T  43286882 acactggttaagcataccataaaagagaattattactataaaaggaaactatttttgac 43286824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 5694480 - 5694423
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  5694480 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 5694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 15227898 - 15227841
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  15227898 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 15227841  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 29683355 - 29683298
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| |||||||| ||||||||||| ||||| |||||||||||||||    
T  29683355 cactggttaagcataccataaaagtgaattattactataaaatgaaactgtttttgac 29683298  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 51065775 - 51065832
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  51065775 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 51065832  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 51368812 - 51368869
Alignment:
Q  214 cactgattaagtatatcataaaa-ggaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||| |||||||||||| |||||||||||| ||||||||    
T  51368812 cactggttaagcataccataaaatggaattattactataaaaggaaactatttttgac 51368869  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 47010152 - 47010096
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttga 269  Q
    ||||| ||||| ||| |||||||| ||||||||||  ||||||||||||||||||||    
T  47010152 cactggttaagcataccataaaagagaattattaccataaaaggaaactgtttttga 47010096  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 41081 - 41021
Alignment:
Q  211 ggacactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||||||| ||||| ||||||||||||| ||||||||   |||||||||||||||||||||    
T  41081 ggacactggttaagcatatcataaaaggaaattattatcataaaaggaaactgtttttgac 41021  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 3026033 - 3026093
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||| ||| |||||||| ||||||||||  |||||| ||||||||||||||    
T  3026033 ggacactgattaagcataccataaaagagaattattacgataaaagaaaactgtttttgac 3026093  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 392255 - 392198
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| |||||||| ||||||||||  |||||||||||||||||||||    
T  392255 cactggttaagcataccataaaagagaattattaccataaaaggaaactgtttttgac 392198  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 4215854 - 4215797
Alignment:
Q  214 cactgattaagtatatcataaaaggaa-ttattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||||| |||||||  |||||||||||||||||||||    
T  4215854 cactggttaagcataccataaaaggaaattattaccataaaaggaaactgtttttgac 4215797  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 32929535 - 32929592
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  32929535 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 32929592  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 2350810 - 2350754
Alignment:
Q  215 actgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||| ||||| ||||||||||||| |||||||||  |||||||||||| ||||||||    
T  2350810 actggttaagcatatcataaaagggaattattaccataaaaggaaactatttttgac 2350754  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 15055 - 14998
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  15055 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 14998  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 7689227 - 7689284
Alignment:
Q  214 cactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||||||| |||||||| ||||||||||  |||||| ||||||||||||||    
T  7689227 cactggttaagtataccataaaagagaattattaccataaaagaaaactgtttttgac 7689284  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 24438636 - 24438579
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  24438636 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 24438579  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 525114 - 525158
Alignment:
Q  226 atatcataaaag-gaattattactttaaaaggaaactgtttttga 269  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||    
T  525114 atatcataaaagagaattattaccataaaaggaaactgtttttga 525158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 28262165 - 28262129
Alignment:
Q  233 aaaaggaattattactttaaaaggaaactgtttttga 269  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  28262165 aaaaagaattattactataaaaggaaactgtttttga 28262129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 12506439 - 12506398
Alignment:
Q  230 cataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  12506439 cataaaagagaattattactataaaaggaaactgtttttgac 12506398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 34650860 - 34650917
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  34650860 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 34650917  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 10956109 - 10956053
Alignment:
Q  215 actgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    |||| ||||| ||||||||||||| |||||||||  |||||||||| ||||||||||    
T  10956109 actggttaagcatatcataaaaggaaattattaccataaaaggaaattgtttttgac 10956053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 4381954 - 4381897
Alignment:
Q  214 cactgattaagtatatcataaaa-ggaattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||| |||||||||||  |||||||||||||||||||||    
T  4381954 cactggttaagcataccataaaatggaattattaccataaaaggaaactgtttttgac 4381897  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 6580348 - 6580291
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  6580348 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 6580291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 20553090 - 20553033
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  20553090 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 20553033  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 22068347 - 22068404
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  22068347 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 22068404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 27856423 - 27856480
Alignment:
Q  214 cactgattaagtatatcataaaaggaa-ttattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||||| |||||||  |||||||||||||||||||||    
T  27856423 cactggttaagcataccataaaaggaaattattaccataaaaggaaactgtttttgac 27856480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 30486369 - 30486312
Alignment:
Q  214 cactgattaagtatatcataaaagg-aattattactttaaaaggaaactgtttttgac 270  Q
    ||||| ||||| ||| ||||||||| |||||||||  |||||||||||||||||||||    
T  30486369 cactggttaagcataccataaaagggaattattaccataaaaggaaactgtttttgac 30486312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 561546 - 561602
Alignment:
Q  215 actgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||| ||| |||||||| ||||||||| | ||||||||||||| |||||||    
T  561546 actgattaagcataccataaaagagaattattattataaaaggaaactgattttgac 561602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 32860263 - 32860204
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||| ||||| ||| |||||||| |||||||||| | ||||||||||||||||||||    
T  32860263 ggacactggttaagcataccataaaagagaattattacat-aaaaggaaactgtttttgac 32860204  T

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Target: scaffold1266 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 450 - 394
Alignment:
Q  215 actgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||  |||||||||||| ||||||||||  || ||||||||||||||||||    
T  450 actgattaatcatatcataaaagagaattattaccgtagaaggaaactgtttttgac 394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 19609 - 19669
Alignment:
Q  211 ggacactgattaagtatatcataaaag-gaattattactttaaaaggaaactgtttttgac 270  Q
    |||||||||||||  |||||||||||| ||| |||||   |||||||||||||||||||||    
T  19609 ggacactgattaatcatatcataaaagagaactattatcgtaaaaggaaactgtttttgac 19669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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